Wall clock time and date at job start Tue Mar 31 2020 07:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81404 * 102.99760 * 2 1 4 4 H 1.08999 * 108.97928 * 303.94378 * 3 2 1 5 5 C 1.53821 * 109.05081 * 184.99849 * 3 2 1 6 6 C 1.54164 * 111.97023 * 198.49537 * 5 3 2 7 7 C 1.50753 * 112.60937 * 318.48440 * 6 5 3 8 8 C 1.54439 * 109.02201 * 93.02095 * 7 6 5 9 9 N 1.39776 * 111.76824 * 282.58794 * 8 7 6 10 10 C 1.38827 * 111.00087 * 189.12833 * 9 8 7 11 11 C 1.39794 * 119.58229 * 56.06521 * 10 9 8 12 12 C 1.38594 * 119.49078 * 179.97438 * 11 10 9 13 13 C 1.38395 * 118.68119 * 359.72480 * 12 11 10 14 14 C 1.40548 * 119.14322 * 0.54286 * 13 12 11 15 15 C 1.41314 * 119.78215 * 179.72629 * 14 13 12 16 16 H 1.08002 * 119.99820 * 18.63304 * 15 14 13 17 17 C 1.40032 * 120.00163 * 198.63957 * 15 14 13 18 18 N 1.30734 * 119.99806 * 22.99007 * 17 15 14 19 19 Si 1.86800 * 119.99814 * 202.99340 * 17 15 14 20 20 H 1.48504 * 109.47253 * 269.99624 * 19 17 15 21 21 H 1.48496 * 109.47130 * 149.99930 * 19 17 15 22 22 H 1.48496 * 109.47228 * 29.99726 * 19 17 15 23 23 N 1.31948 * 119.58432 * 236.05148 * 10 9 8 24 24 C 1.47633 * 114.75830 * 62.27918 * 9 8 7 25 25 H 1.08999 * 109.47093 * 299.99489 * 1 2 3 26 26 H 1.08993 * 109.46960 * 60.00109 * 1 2 3 27 27 H 1.09000 * 109.46718 * 179.97438 * 1 2 3 28 28 H 1.08998 * 108.97929 * 77.84761 * 5 3 2 29 29 H 1.08998 * 108.91406 * 319.09143 * 5 3 2 30 30 H 1.09005 * 108.85294 * 197.68602 * 6 5 3 31 31 H 1.08998 * 108.85591 * 79.29593 * 6 5 3 32 32 H 1.09000 * 109.54632 * 333.15972 * 7 6 5 33 33 H 1.08993 * 109.62303 * 212.92556 * 7 6 5 34 34 H 1.09010 * 109.01667 * 162.00004 * 8 7 6 35 35 H 1.08992 * 109.02198 * 43.18083 * 8 7 6 36 36 H 1.08005 * 120.25955 * 359.96459 * 11 10 9 37 37 H 1.08004 * 120.65962 * 180.02562 * 12 11 10 38 38 H 1.07996 * 120.42405 * 180.28630 * 13 12 11 39 39 H 0.96998 * 120.00246 * 5.88447 * 18 17 15 40 40 H 1.09003 * 109.74160 * 36.83676 * 24 9 8 41 41 H 1.09003 * 109.74898 * 157.55489 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7410 2.2424 -0.8551 5 6 3.7463 1.9310 -0.1267 6 6 4.2150 3.3313 0.3162 7 6 3.3008 4.4282 -0.1672 8 6 2.2502 4.7257 0.9251 9 7 1.2404 3.7596 0.9498 10 6 0.2038 4.1448 1.7891 11 6 -0.4376 5.3686 1.5769 12 6 -1.4726 5.7510 2.4156 13 6 -1.8452 4.9000 3.4414 14 6 -1.1578 3.6852 3.6067 15 6 -1.5232 2.8088 4.6532 16 1 -2.4887 2.9066 5.1272 17 6 -0.6335 1.8134 5.0758 18 7 0.6487 1.9477 4.8585 19 14 -1.2786 0.2939 5.9500 20 1 -1.3087 0.5403 7.4141 21 1 -0.3887 -0.8591 5.6603 22 1 -2.6513 -0.0076 5.4705 23 7 -0.1638 3.3510 2.7769 24 6 1.6996 2.3933 1.2689 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0347 1.7727 -1.1658 29 1 4.2350 1.1806 0.4947 30 1 5.2161 3.5084 -0.0771 31 1 4.2560 3.3611 1.4050 32 1 2.7977 4.1081 -1.0795 33 1 3.8826 5.3277 -0.3680 34 1 1.8039 5.7014 0.7323 35 1 2.7442 4.7483 1.8964 36 1 -0.1289 6.0114 0.7656 37 1 -1.9815 6.6922 2.2686 38 1 -2.6510 5.1677 4.1087 39 1 0.9931 2.7728 4.4823 40 1 2.4951 2.4366 2.0129 41 1 0.8664 1.8051 1.6536 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:00 Heat of formation + Delta-G solvation = 29.631622 kcal Electronic energy + Delta-G solvation = -22231.218058 eV Core-core repulsion = 19236.673981 eV Total energy + Delta-G solvation = -2994.544077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91685 -37.71276 -34.61925 -33.40537 -32.19610 -30.48143 -29.30304 -28.53591 -26.21514 -25.37345 -24.62641 -21.88196 -21.38603 -20.17342 -19.35925 -18.19286 -16.72960 -15.57199 -15.42310 -15.13325 -14.68941 -14.43314 -14.17644 -14.12822 -13.94923 -13.41649 -13.17895 -13.02305 -12.64648 -12.29315 -12.02783 -11.92237 -11.78365 -11.61613 -11.51407 -11.09730 -10.80640 -10.59454 -10.48841 -10.40172 -10.31485 -10.17531 -9.95116 -9.62405 -9.13977 -8.86894 -8.32614 -8.02482 -7.37698 -7.17390 -6.98157 -4.62201 2.00778 2.65061 2.80330 2.86082 3.16147 3.26170 3.36478 4.03100 4.29402 4.62772 4.81637 5.00607 5.13518 5.20469 5.31268 5.47892 5.52639 5.54481 5.66714 5.70201 5.79877 5.83360 5.94201 6.04305 6.06933 6.09647 6.13208 6.23184 6.36020 6.41380 6.45229 6.48241 6.64246 6.74843 6.89165 7.34152 7.54643 7.60873 7.65675 7.84926 7.93777 8.17982 8.65618 8.79452 9.75174 10.12649 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.007260 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.661780 B = 3855.775841 C = 5130.538047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.275 6.275 3 C -0.044 4.044 4 H 0.093 0.907 5 C -0.095 4.095 6 C -0.116 4.116 7 C -0.118 4.118 8 C 0.077 3.923 9 N -0.493 5.493 10 C 0.343 3.657 11 C -0.329 4.329 12 C -0.036 4.036 13 C -0.294 4.294 14 C 0.268 3.732 15 C -0.491 4.491 16 H 0.081 0.919 17 C 0.042 3.958 18 N -0.755 5.755 19 Si 1.064 2.936 20 H -0.278 1.278 21 H -0.272 1.272 22 H -0.276 1.276 23 N -0.578 5.578 24 C 0.076 3.924 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.305 0.695 40 H 0.054 0.946 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 0.094 -7.543 8.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.047 6.047 3 C -0.174 4.174 4 H 0.111 0.889 5 C -0.134 4.134 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.051 4.051 9 N -0.211 5.211 10 C 0.106 3.894 11 C -0.354 4.354 12 C -0.060 4.060 13 C -0.316 4.316 14 C 0.144 3.856 15 C -0.522 4.522 16 H 0.099 0.901 17 C -0.185 4.185 18 N -0.377 5.377 19 Si 0.888 3.112 20 H -0.204 1.204 21 H -0.196 1.196 22 H -0.201 1.201 23 N -0.299 5.299 24 C -0.051 4.051 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.032 -3.043 -7.236 9.899 hybrid contribution -1.580 3.497 -0.197 3.843 sum 4.452 0.454 -7.433 8.676 Atomic orbital electron populations 1.23381 0.93602 1.05796 1.05640 1.86438 1.08293 1.12091 1.97928 1.23133 0.99079 0.92581 1.02558 0.88874 1.21709 0.92610 0.97284 1.01802 1.21418 0.98738 0.93796 1.01579 1.21511 0.96650 0.98289 0.99111 1.21049 0.91723 0.95129 0.97237 1.56019 1.10926 1.03544 1.50654 1.19470 0.91208 0.90368 0.88362 1.20595 1.06885 1.00479 1.07415 1.20757 0.94592 0.97018 0.93646 1.21609 1.07889 0.98070 1.04052 1.18301 0.86913 0.89793 0.90557 1.20515 1.03911 1.13011 1.14805 0.90121 1.26911 0.93609 1.02146 0.95875 1.70205 1.14027 1.29068 1.24378 0.83657 0.76418 0.74880 0.76221 1.20378 1.19638 1.20125 1.68079 1.21597 1.34040 1.06218 1.22104 1.01330 0.88164 0.93527 0.89447 0.90923 0.88630 0.91596 0.91302 0.91894 0.91885 0.90867 0.91309 0.90439 0.95638 0.88373 0.88392 0.88319 0.87964 0.92748 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 10.43 101.05 1.05 -0.77 16 2 S -0.27 -4.52 21.52 -107.50 -2.31 -6.84 16 3 C -0.04 -0.72 2.23 -27.40 -0.06 -0.78 16 4 H 0.09 1.52 7.26 -51.90 -0.38 1.15 16 5 C -0.10 -1.30 5.30 -25.70 -0.14 -1.43 16 6 C -0.12 -1.48 5.31 -27.25 -0.14 -1.63 16 7 C -0.12 -1.53 5.65 -27.10 -0.15 -1.68 16 8 C 0.08 1.29 4.78 -6.74 -0.03 1.26 16 9 N -0.49 -9.59 3.97 -178.25 -0.71 -10.30 16 10 C 0.34 7.90 6.36 -155.33 -0.99 6.91 16 11 C -0.33 -7.25 9.12 -38.87 -0.35 -7.60 16 12 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 13 C -0.29 -7.17 9.83 -38.65 -0.38 -7.55 16 14 C 0.27 7.12 6.13 -85.00 -0.52 6.60 16 15 C -0.49 -12.94 9.04 -37.74 -0.34 -13.28 16 16 H 0.08 2.03 7.94 -52.49 -0.42 1.62 16 17 C 0.04 1.07 5.27 -17.35 -0.09 0.98 16 18 N -0.76 -20.12 13.08 55.55 0.73 -19.39 16 19 Si 1.06 21.60 29.99 -169.99 -5.10 16.50 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 N -0.58 -14.80 5.69 -10.33 -0.06 -14.85 16 24 C 0.08 1.48 4.36 -4.51 -0.02 1.47 16 25 H 0.09 1.63 6.73 -51.92 -0.35 1.28 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 32 H 0.07 0.97 7.11 -51.93 -0.37 0.60 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.27 6.34 -51.92 -0.33 0.95 16 35 H 0.03 0.46 7.54 -51.93 -0.39 0.07 16 36 H 0.10 1.95 7.08 -52.48 -0.37 1.58 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.31 8.49 6.64 -40.82 -0.27 8.22 16 40 H 0.05 1.13 6.66 -51.93 -0.35 0.79 16 41 H 0.11 2.51 4.62 -51.93 -0.24 2.27 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -27.27 328.82 -11.04 -38.31 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.97 Total: 10.31 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.57 Total: -18.69 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.04 Total: -44.55 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.10 Total: 16.50 kcal Atomic # 16 Polarization: -4.52 SS G_CDS: -2.31 Total: -6.84 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.27 -11.04 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.938 kcal (2) G-P(sol) polarization free energy of solvation -27.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds