Wall clock time and date at job start Tue Mar 31 2020 07:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81408 * 102.99866 * 2 1 4 4 H 1.09000 * 108.81221 * 56.52418 * 3 2 1 5 5 C 1.45875 * 108.83997 * 175.00604 * 3 2 1 6 6 C 1.54522 * 111.66927 * 182.21739 * 5 3 2 7 7 C 1.50546 * 108.96075 * 282.70558 * 6 5 3 8 8 C 1.54050 * 112.86231 * 91.61615 * 7 6 5 9 9 N 1.47942 * 113.41909 * 317.93237 * 8 7 6 10 10 C 1.38813 * 111.00358 * 192.12221 * 9 8 7 11 11 C 1.39805 * 119.58355 * 307.13455 * 10 9 8 12 12 C 1.38605 * 119.49013 * 179.76379 * 11 10 9 13 13 C 1.38388 * 118.67916 * 0.49934 * 12 11 10 14 14 C 1.40558 * 119.15158 * 359.74728 * 13 12 11 15 15 C 1.41310 * 119.78407 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00061 * 359.97239 * 15 14 13 17 17 C 1.40022 * 119.99931 * 179.97438 * 15 14 13 18 18 N 1.30745 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46861 * 119.99874 * 19 17 15 22 22 H 1.48493 * 109.47216 * 239.99925 * 19 17 15 23 23 N 1.31952 * 119.59107 * 127.40486 * 10 9 8 24 24 C 1.44298 * 113.64385 * 318.07538 * 9 8 7 25 25 H 1.08991 * 109.47528 * 59.99660 * 1 2 3 26 26 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46837 * 299.99448 * 1 2 3 28 28 H 1.08996 * 109.04542 * 61.64894 * 5 3 2 29 29 H 1.09000 * 109.04031 * 302.77655 * 5 3 2 30 30 H 1.09002 * 109.57419 * 42.58300 * 6 5 3 31 31 H 1.08998 * 109.57371 * 162.83368 * 6 5 3 32 32 H 1.08998 * 108.78736 * 212.70549 * 7 6 5 33 33 H 1.08998 * 108.78545 * 330.92099 * 7 6 5 34 34 H 1.08994 * 108.72166 * 196.87980 * 8 7 6 35 35 H 1.08999 * 108.61796 * 78.91370 * 8 7 6 36 36 H 1.07994 * 120.25451 * 359.97438 * 11 10 9 37 37 H 1.07992 * 120.65646 * 180.24567 * 12 11 10 38 38 H 1.08000 * 120.42562 * 179.72013 * 13 12 11 39 39 H 0.96998 * 119.99930 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.70029 * 335.68683 * 24 9 8 41 41 H 1.09007 * 109.70059 * 215.10398 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7466 2.2381 0.8606 5 6 3.6681 1.9172 0.1202 6 6 4.0847 3.4040 0.1822 7 6 4.0284 3.9860 -1.2050 8 6 2.6645 4.6233 -1.5318 9 7 1.5133 3.8219 -1.0615 10 6 0.3257 4.2884 -1.6084 11 6 -0.0046 5.6416 -1.4886 12 6 -1.1885 6.1063 -2.0397 13 6 -2.0177 5.2071 -2.6871 14 6 -1.6325 3.8579 -2.7699 15 6 -2.4688 2.9283 -3.4283 16 1 -3.4006 3.2554 -3.8655 17 6 -2.0893 1.5832 -3.5139 18 7 -0.9610 1.1874 -2.9851 19 14 -3.1951 0.3543 -4.3838 20 1 -4.4044 1.0500 -4.8924 21 1 -2.4598 -0.2546 -5.5213 22 1 -3.5997 -0.7093 -3.4298 23 7 -0.4797 3.4482 -2.2300 24 6 1.6644 2.4046 -1.2861 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.1468 1.4494 -0.7400 29 1 4.0032 1.4159 1.0282 30 1 3.4013 3.9478 0.8344 31 1 5.1002 3.4828 0.5703 32 1 4.8058 4.7442 -1.2994 33 1 4.2250 3.1931 -1.9266 34 1 2.5861 4.7474 -2.6118 35 1 2.6194 5.6073 -1.0652 36 1 0.6591 6.3203 -0.9737 37 1 -1.4604 7.1485 -1.9617 38 1 -2.9489 5.5378 -3.1227 39 1 -0.6980 0.2556 -3.0447 40 1 2.3572 2.2350 -2.1104 41 1 0.6956 1.9648 -1.5237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:03 Heat of formation + Delta-G solvation = 41.973502 kcal Electronic energy + Delta-G solvation = -22331.315693 eV Core-core repulsion = 19337.306800 eV Total energy + Delta-G solvation = -2994.008893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.46852 -37.52251 -34.44320 -33.34592 -32.16601 -30.44357 -29.24874 -28.33408 -26.22357 -25.36849 -24.53871 -21.49157 -21.21080 -20.17300 -19.19985 -17.71838 -16.52013 -15.68814 -15.38313 -14.92631 -14.53899 -14.41632 -13.98874 -13.93734 -13.63655 -13.20926 -13.00857 -12.71057 -12.52512 -12.37075 -12.12750 -11.85910 -11.57489 -11.25611 -11.12094 -11.03473 -10.76930 -10.67669 -10.50195 -10.46382 -10.23860 -10.05311 -9.93951 -9.49327 -9.41383 -8.75951 -8.08223 -7.62088 -7.17978 -6.95099 -6.53022 -4.60912 2.24913 2.66008 2.93943 3.05106 3.08285 3.08668 3.15497 3.87718 4.40864 4.69536 4.95526 5.09415 5.30175 5.41527 5.47748 5.69943 5.73156 5.79237 5.88122 5.93434 5.97630 6.00967 6.07624 6.14304 6.20217 6.30324 6.34366 6.44221 6.53348 6.54090 6.58588 6.66340 6.74187 6.88901 7.10561 7.29179 7.52080 7.66801 7.76403 7.83540 8.15653 8.32433 8.63404 8.91357 9.98856 10.20851 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.007569 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.309482 B = 3698.322467 C = 5323.259906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.294 6.294 3 C -0.035 4.035 4 H 0.085 0.915 5 C -0.100 4.100 6 C -0.102 4.102 7 C -0.120 4.120 8 C 0.073 3.927 9 N -0.486 5.486 10 C 0.326 3.674 11 C -0.321 4.321 12 C -0.044 4.044 13 C -0.294 4.294 14 C 0.278 3.722 15 C -0.429 4.429 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.725 5.725 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.272 1.272 23 N -0.514 5.514 24 C 0.045 3.955 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.272 0.728 40 H 0.041 0.959 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.644 0.168 3.734 7.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.067 6.067 3 C -0.164 4.164 4 H 0.103 0.897 5 C -0.139 4.139 6 C -0.142 4.142 7 C -0.158 4.158 8 C -0.053 4.053 9 N -0.205 5.205 10 C 0.089 3.911 11 C -0.346 4.346 12 C -0.068 4.068 13 C -0.317 4.317 14 C 0.151 3.849 15 C -0.461 4.461 16 H 0.102 0.898 17 C -0.148 4.148 18 N -0.348 5.348 19 Si 0.729 3.271 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.197 1.197 23 N -0.232 5.232 24 C -0.084 4.084 25 H 0.138 0.862 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.661 -1.773 4.181 8.906 hybrid contribution -1.470 1.305 -0.979 2.196 sum 6.192 -0.467 3.202 6.986 Atomic orbital electron populations 1.23611 0.92803 1.05503 1.07491 1.86255 1.09404 1.12958 1.98040 1.22132 0.98968 0.92106 1.03179 0.89664 1.20404 0.94305 0.96904 1.02299 1.21241 1.00731 0.94917 0.97288 1.21445 0.96141 1.00466 0.97713 1.22351 0.88333 0.96598 0.98034 1.57705 1.01034 1.04709 1.57020 1.19742 0.91044 0.89884 0.90449 1.20709 1.02080 0.95219 1.16556 1.20720 0.93652 0.97320 0.95156 1.21647 1.02318 0.95391 1.12357 1.18320 0.88299 0.89706 0.88555 1.19624 1.04621 0.91928 1.29912 0.89815 1.25998 0.95003 0.99376 0.94445 1.69906 1.17997 1.16520 1.30361 0.86304 0.80875 0.80210 0.79677 1.18483 1.19813 1.19750 1.68418 1.06301 1.34034 1.14448 1.22621 1.06363 0.86833 0.92546 0.86224 0.89555 0.91544 0.91823 0.91872 0.90767 0.92063 0.91527 0.92182 0.94546 0.91047 0.88693 0.88591 0.88448 0.91607 0.94083 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 10.39 101.05 1.05 -1.19 16 2 S -0.29 -5.14 21.67 -107.50 -2.33 -7.47 16 3 C -0.03 -0.60 2.28 -29.59 -0.07 -0.67 16 4 H 0.09 1.57 8.08 -51.89 -0.42 1.15 16 5 C -0.10 -1.46 4.51 -29.30 -0.13 -1.59 16 6 C -0.10 -1.32 5.62 -27.16 -0.15 -1.48 16 7 C -0.12 -1.63 5.29 -27.41 -0.15 -1.77 16 8 C 0.07 1.24 4.88 -2.70 -0.01 1.23 16 9 N -0.49 -9.77 4.03 -173.09 -0.70 -10.47 16 10 C 0.33 7.67 6.37 -155.33 -0.99 6.68 16 11 C -0.32 -7.15 9.30 -38.86 -0.36 -7.51 16 12 C -0.04 -0.97 10.15 -39.39 -0.40 -1.37 16 13 C -0.29 -7.08 9.83 -38.65 -0.38 -7.46 16 14 C 0.28 7.27 6.55 -85.00 -0.56 6.71 16 15 C -0.43 -10.90 9.14 -37.75 -0.34 -11.24 16 16 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 17 C 0.08 1.80 5.50 -17.35 -0.10 1.70 16 18 N -0.72 -17.41 8.41 55.55 0.47 -16.95 16 19 Si 0.91 17.83 29.56 -169.99 -5.02 12.81 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 N -0.51 -13.18 5.74 -10.33 -0.06 -13.24 16 24 C 0.05 0.91 4.52 -4.70 -0.02 0.89 16 25 H 0.12 2.46 4.54 -51.93 -0.24 2.22 16 26 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 27 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 28 H 0.06 0.94 7.59 -51.93 -0.39 0.54 16 29 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.85 6.67 -51.93 -0.35 0.51 16 34 H 0.04 0.67 8.00 -51.93 -0.42 0.25 16 35 H 0.07 1.14 7.18 -51.93 -0.37 0.76 16 36 H 0.09 1.92 7.15 -52.49 -0.38 1.54 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.27 6.06 8.07 -40.82 -0.33 5.73 16 40 H 0.04 0.85 6.80 -51.93 -0.35 0.50 16 41 H 0.16 3.59 2.68 -51.93 -0.14 3.45 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -26.05 324.27 -11.32 -37.37 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.95 Total: 10.15 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.61 Total: -17.09 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.29 Total: -40.66 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.81 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.33 Total: -7.47 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.05 -11.32 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.344 kcal (2) G-P(sol) polarization free energy of solvation -26.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds