Wall clock time and date at job start Tue Mar 31 2020 07:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81408 * 102.99866 * 2 1 4 4 H 1.09000 * 108.81221 * 56.52418 * 3 2 1 5 5 C 1.45875 * 108.83997 * 175.00604 * 3 2 1 6 6 C 1.54522 * 111.66927 * 182.21739 * 5 3 2 7 7 C 1.50546 * 108.96075 * 282.70558 * 6 5 3 8 8 C 1.54050 * 112.86231 * 91.61615 * 7 6 5 9 9 N 1.47942 * 113.41909 * 317.93237 * 8 7 6 10 10 C 1.38813 * 111.00358 * 192.12221 * 9 8 7 11 11 C 1.39805 * 119.58355 * 307.13455 * 10 9 8 12 12 C 1.38605 * 119.49013 * 179.76379 * 11 10 9 13 13 C 1.38388 * 118.67916 * 0.49934 * 12 11 10 14 14 C 1.40558 * 119.15158 * 359.74728 * 13 12 11 15 15 C 1.41310 * 119.78407 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00061 * 359.97239 * 15 14 13 17 17 C 1.40022 * 119.99931 * 179.97438 * 15 14 13 18 18 N 1.30745 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46861 * 119.99874 * 19 17 15 22 22 H 1.48493 * 109.47216 * 239.99925 * 19 17 15 23 23 N 1.31952 * 119.59107 * 127.40486 * 10 9 8 24 24 C 1.44298 * 113.64385 * 318.07538 * 9 8 7 25 25 H 1.08991 * 109.47528 * 59.99660 * 1 2 3 26 26 H 1.09001 * 109.47010 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46837 * 299.99448 * 1 2 3 28 28 H 1.08996 * 109.04542 * 61.64894 * 5 3 2 29 29 H 1.09000 * 109.04031 * 302.77655 * 5 3 2 30 30 H 1.09002 * 109.57419 * 42.58300 * 6 5 3 31 31 H 1.08998 * 109.57371 * 162.83368 * 6 5 3 32 32 H 1.08998 * 108.78736 * 212.70549 * 7 6 5 33 33 H 1.08998 * 108.78545 * 330.92099 * 7 6 5 34 34 H 1.08994 * 108.72166 * 196.87980 * 8 7 6 35 35 H 1.08999 * 108.61796 * 78.91370 * 8 7 6 36 36 H 1.07994 * 120.25451 * 359.97438 * 11 10 9 37 37 H 1.07992 * 120.65646 * 180.24567 * 12 11 10 38 38 H 1.08000 * 120.42562 * 179.72013 * 13 12 11 39 39 H 0.96998 * 119.99930 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.70029 * 335.68683 * 24 9 8 41 41 H 1.09007 * 109.70059 * 215.10398 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7466 2.2381 0.8606 5 6 3.6681 1.9172 0.1202 6 6 4.0847 3.4040 0.1822 7 6 4.0284 3.9860 -1.2050 8 6 2.6645 4.6233 -1.5318 9 7 1.5133 3.8219 -1.0615 10 6 0.3257 4.2884 -1.6084 11 6 -0.0046 5.6416 -1.4886 12 6 -1.1885 6.1063 -2.0397 13 6 -2.0177 5.2071 -2.6871 14 6 -1.6325 3.8579 -2.7699 15 6 -2.4688 2.9283 -3.4283 16 1 -3.4006 3.2554 -3.8655 17 6 -2.0893 1.5832 -3.5139 18 7 -0.9610 1.1874 -2.9851 19 14 -3.1951 0.3543 -4.3838 20 1 -4.4044 1.0500 -4.8924 21 1 -2.4598 -0.2546 -5.5213 22 1 -3.5997 -0.7093 -3.4298 23 7 -0.4797 3.4482 -2.2300 24 6 1.6644 2.4046 -1.2861 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.1468 1.4494 -0.7400 29 1 4.0032 1.4159 1.0282 30 1 3.4013 3.9478 0.8344 31 1 5.1002 3.4828 0.5703 32 1 4.8058 4.7442 -1.2994 33 1 4.2250 3.1931 -1.9266 34 1 2.5861 4.7474 -2.6118 35 1 2.6194 5.6073 -1.0652 36 1 0.6591 6.3203 -0.9737 37 1 -1.4604 7.1485 -1.9617 38 1 -2.9489 5.5378 -3.1227 39 1 -0.6980 0.2556 -3.0447 40 1 2.3572 2.2350 -2.1104 41 1 0.6956 1.9648 -1.5237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:02 Heat of formation + Delta-G solvation = 30.827625 kcal Electronic energy + Delta-G solvation = -22331.799015 eV Core-core repulsion = 19337.306800 eV Total energy + Delta-G solvation = -2994.492214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06060 -39.09681 -36.00997 -35.02478 -33.50563 -32.21517 -30.97376 -29.78069 -27.89815 -26.78413 -26.06345 -23.18102 -22.88321 -21.47757 -20.66069 -19.47846 -18.09600 -17.20004 -16.90487 -16.54598 -16.23411 -15.87467 -15.55564 -15.34026 -15.02980 -14.65382 -14.48482 -14.21680 -14.05637 -13.97411 -13.75479 -13.19198 -13.00416 -12.80366 -12.77766 -12.59770 -12.40620 -12.26271 -11.91912 -11.76881 -11.66319 -11.45199 -11.33925 -11.20244 -10.84974 -10.44893 -9.88758 -9.42416 -8.69854 -8.59619 -8.30642 -6.49269 0.85064 0.89476 1.17748 1.41663 1.51982 1.54100 1.64937 2.22089 2.76730 3.01409 3.71989 3.86038 3.97950 4.02294 4.10554 4.22669 4.32183 4.33777 4.42773 4.47795 4.56433 4.66670 4.73939 4.75067 4.80700 4.92087 4.93860 5.02474 5.04597 5.15373 5.19410 5.24184 5.29098 5.34630 5.46803 5.59888 5.77403 5.90011 6.03939 6.08101 6.41874 6.53285 6.80306 7.06855 8.16264 8.42923 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.007569 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.309482 B = 3698.322467 C = 5323.259906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.289 6.289 3 C -0.024 4.024 4 H 0.073 0.927 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.113 4.113 8 C 0.070 3.930 9 N -0.483 5.483 10 C 0.309 3.691 11 C -0.325 4.325 12 C -0.041 4.041 13 C -0.320 4.320 14 C 0.244 3.756 15 C -0.461 4.461 16 H 0.084 0.916 17 C 0.036 3.964 18 N -0.740 5.740 19 Si 0.976 3.024 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.265 1.265 23 N -0.534 5.534 24 C 0.047 3.953 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.015 0.985 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.277 0.723 40 H 0.027 0.973 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 0.248 4.488 9.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.061 6.061 3 C -0.153 4.153 4 H 0.092 0.908 5 C -0.139 4.139 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.055 4.055 9 N -0.201 5.201 10 C 0.071 3.929 11 C -0.350 4.350 12 C -0.066 4.066 13 C -0.343 4.343 14 C 0.118 3.882 15 C -0.493 4.493 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.362 5.362 19 Si 0.797 3.203 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.190 1.190 23 N -0.253 5.253 24 C -0.082 4.082 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.087 -1.677 4.947 10.481 hybrid contribution -1.855 1.333 -1.178 2.570 sum 7.231 -0.344 3.768 8.162 Atomic orbital electron populations 1.23556 0.93374 1.06317 1.06138 1.86185 1.08835 1.13164 1.97905 1.22071 1.00749 0.91560 1.00899 0.90822 1.20441 0.92001 0.98513 1.02920 1.21238 1.02416 0.93179 0.96636 1.21445 0.94614 1.01065 0.97955 1.22521 0.88967 0.97209 0.96842 1.57842 1.01050 1.04932 1.56263 1.20255 0.91999 0.90528 0.90143 1.21024 1.02496 0.95173 1.16273 1.21096 0.93007 0.98726 0.93736 1.21815 1.03366 0.95288 1.13825 1.18778 0.89059 0.90985 0.89380 1.19885 1.05041 0.93178 1.31164 0.89834 1.26743 0.96398 1.00460 0.95023 1.70012 1.18912 1.17011 1.30256 0.85245 0.78887 0.77689 0.78479 1.18316 1.19499 1.19002 1.68434 1.06588 1.35004 1.15289 1.22497 1.05021 0.87134 0.93572 0.88778 0.87750 0.91582 0.91945 0.90386 0.91606 0.88661 0.88239 0.92970 0.96603 0.89744 0.86374 0.85141 0.87757 0.91213 0.95497 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 10.39 113.37 1.18 -3.32 16 2 S -0.29 -9.92 21.67 -56.49 -1.22 -11.14 16 3 C -0.02 -0.80 2.28 28.74 0.07 -0.74 16 4 H 0.07 2.68 8.08 -2.41 -0.02 2.66 16 5 C -0.10 -2.69 4.51 28.93 0.13 -2.56 16 6 C -0.09 -2.17 5.62 30.32 0.17 -2.00 16 7 C -0.11 -2.78 5.29 30.15 0.16 -2.62 16 8 C 0.07 2.30 4.88 86.46 0.42 2.72 16 9 N -0.48 -19.37 4.03 -701.54 -2.82 -22.19 16 10 C 0.31 14.68 6.37 133.42 0.85 15.53 16 11 C -0.32 -14.30 9.30 22.74 0.21 -14.09 16 12 C -0.04 -1.81 10.15 22.39 0.23 -1.58 16 13 C -0.32 -15.72 9.83 22.87 0.22 -15.50 16 14 C 0.24 13.25 6.55 40.18 0.26 13.51 16 15 C -0.46 -24.27 9.14 23.46 0.21 -24.06 16 16 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 17 C 0.04 1.75 5.50 85.29 0.47 2.21 16 18 N -0.74 -36.56 8.41 21.84 0.18 -36.38 16 19 Si 0.98 37.12 29.56 68.60 2.03 39.15 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 23 N -0.53 -28.30 5.74 -186.59 -1.07 -29.37 16 24 C 0.05 1.91 4.52 87.12 0.39 2.31 16 25 H 0.09 3.97 4.54 -2.39 -0.01 3.96 16 26 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.72 7.59 -2.39 -0.02 1.70 16 29 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 30 H 0.07 1.66 7.79 -2.39 -0.02 1.64 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.38 6.67 -2.39 -0.02 1.37 16 34 H 0.02 0.57 8.00 -2.39 -0.02 0.55 16 35 H 0.08 2.51 7.18 -2.39 -0.02 2.49 16 36 H 0.12 4.54 7.15 -2.91 -0.02 4.52 16 37 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.28 12.62 8.07 -92.71 -0.75 11.87 16 40 H 0.03 1.14 6.80 -2.39 -0.02 1.12 16 41 H 0.14 6.34 2.68 -2.38 -0.01 6.34 16 Total: -1.00 -57.94 324.27 3.11 -54.83 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 1.04 Total: 35.28 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 4.98 Total: -30.18 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -3.71 Total: -87.94 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.22 Total: -11.14 kcal Total: -57.94 3.11 -54.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.655 kcal (2) G-P(sol) polarization free energy of solvation -57.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds