Wall clock time and date at job start Tue Mar 31 2020 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46977 * 29.99620 * 3 2 1 6 6 H 1.48493 * 109.47395 * 149.99515 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 H 1.08995 * 109.47357 * 39.71838 * 15 13 12 17 17 N 1.46895 * 109.46992 * 159.72213 * 15 13 12 18 18 C 1.52995 * 109.46732 * 279.72068 * 15 13 12 19 19 C 1.50710 * 109.46997 * 174.99896 * 18 15 13 20 20 C 1.38284 * 119.96772 * 89.99916 * 19 18 15 21 21 C 1.38241 * 120.10954 * 179.97438 * 20 19 18 22 22 C 1.38165 * 120.05783 * 0.02562 * 21 20 19 23 23 C 1.38713 * 119.94374 * 0.02562 * 22 21 20 24 24 O 1.35896 * 120.05895 * 180.02562 * 23 22 21 25 25 C 1.38115 * 119.97167 * 269.72287 * 19 18 15 26 26 H 0.97003 * 120.00173 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 28 28 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 29 29 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 30 30 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 31 31 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 32 32 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 33 33 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 34 34 H 1.00898 * 111.00474 * 296.04502 * 17 15 13 35 35 H 1.00901 * 111.00088 * 60.00223 * 17 15 13 36 36 H 1.08995 * 109.47790 * 294.99945 * 18 15 13 37 37 H 1.09001 * 109.47648 * 55.00468 * 18 15 13 38 38 H 1.08001 * 119.95006 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.97377 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.03226 * 179.97438 * 22 21 20 41 41 H 0.96699 * 113.99917 * 89.99896 * 24 23 22 42 42 H 1.08005 * 120.02982 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7905 -7.5929 0.0000 15 6 2.9622 -8.5168 0.0078 16 1 3.7954 -8.2785 0.6688 17 7 2.2902 -9.7326 0.4855 18 6 3.4866 -8.7479 -1.4108 19 6 4.5555 -9.8099 -1.3845 20 6 4.2119 -11.1400 -1.5432 21 6 5.1901 -12.1165 -1.5200 22 6 6.5139 -11.7657 -1.3376 23 6 6.8611 -10.4324 -1.1771 24 8 8.1626 -10.0847 -0.9981 25 6 5.8781 -9.4535 -1.2075 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5568 0.8903 29 1 2.8712 -3.6040 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 0.8545 -5.0450 -0.8894 32 1 0.8526 -5.0448 0.8905 33 1 3.3858 -5.9234 0.0021 34 1 1.9914 -9.6279 1.4435 35 1 1.5134 -9.9747 -0.1112 36 1 2.6676 -9.0725 -2.0526 37 1 3.9062 -7.8197 -1.7988 38 1 3.1775 -11.4163 -1.6855 39 1 4.9192 -13.1546 -1.6446 40 1 7.2777 -12.5290 -1.3192 41 1 8.6383 -9.9046 -1.8205 42 1 6.1464 -8.4142 -1.0877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220191663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:10 Heat of formation + Delta-G solvation = -106.538538 kcal Electronic energy + Delta-G solvation = -22104.834283 eV Core-core repulsion = 18661.632554 eV Total energy + Delta-G solvation = -3443.201729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19930 -40.44888 -37.94294 -37.09055 -35.90623 -35.22515 -33.03370 -32.60012 -30.63162 -29.35615 -28.25691 -25.75754 -24.17978 -23.38502 -22.34990 -22.17023 -21.01572 -19.02955 -18.59462 -18.16406 -17.37385 -17.22372 -16.92633 -16.64499 -16.43733 -16.33997 -15.91124 -15.28994 -15.13983 -14.81971 -14.61451 -14.27775 -13.88445 -13.78064 -13.59947 -13.38032 -13.03287 -12.76647 -12.57929 -12.52329 -12.45109 -12.39595 -12.16567 -11.70016 -11.66463 -11.40794 -11.25708 -11.16229 -10.57055 -10.14711 -9.85402 -9.64559 -9.39767 -8.21099 -6.32731 0.41112 0.47281 1.40997 1.42210 1.52042 1.53214 2.17640 2.41523 2.80556 3.12734 3.32942 3.47336 3.72548 3.99649 4.02362 4.08691 4.15506 4.19158 4.22916 4.35878 4.52122 4.52586 4.58200 4.75437 4.90197 4.91348 4.96112 5.08819 5.14498 5.17651 5.39816 5.50516 5.54816 5.58392 5.68222 5.74998 5.82297 5.96889 6.02780 6.20316 6.38025 6.53085 6.84910 6.93342 7.17186 7.37099 8.90981 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002480 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.203984 B =11288.175841 C =12384.955191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.102 4.102 11 C 0.128 3.872 12 N -0.710 5.710 13 C 0.474 3.526 14 O -0.589 6.589 15 C 0.095 3.905 16 H 0.118 0.882 17 N -0.810 5.810 18 C -0.065 4.065 19 C -0.054 4.054 20 C -0.109 4.109 21 C -0.108 4.108 22 C -0.160 4.160 23 C 0.091 3.909 24 O -0.514 6.514 25 C -0.154 4.154 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.010 1.010 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.416 0.584 34 H 0.347 0.653 35 H 0.348 0.652 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.407 0.593 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.756 -24.503 -4.132 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.003 3.997 12 N -0.362 5.362 13 C 0.260 3.740 14 O -0.470 6.470 15 C -0.021 4.021 16 H 0.136 0.864 17 N -0.339 5.339 18 C -0.103 4.103 19 C -0.054 4.054 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.178 4.178 23 C 0.047 3.953 24 O -0.327 6.327 25 C -0.173 4.173 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.253 0.747 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.266 0.734 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.352 -24.994 -3.670 29.054 hybrid contribution -0.540 1.940 -0.234 2.027 sum 13.812 -23.054 -3.905 27.157 Atomic orbital electron populations 1.70113 1.07958 1.27809 1.51695 1.26035 0.95755 1.03603 0.94782 0.85412 0.78685 0.78253 0.78493 1.19755 1.21086 1.18404 1.21681 0.93756 0.91989 1.50438 0.91499 1.18945 0.94462 0.93082 0.94968 1.21594 0.98395 0.91807 1.02156 1.21226 0.92097 0.85869 1.00466 1.46139 1.11161 1.05309 1.73598 1.22760 0.90698 0.85610 0.74951 1.90690 1.18999 1.85401 1.51894 1.21549 0.95328 0.86010 0.99228 0.86435 1.59192 1.35438 1.31135 1.08115 1.20536 0.97189 0.98676 0.93920 1.19447 0.92892 0.94522 0.98548 1.21188 1.00016 0.92125 0.99349 1.21268 0.92079 1.00497 0.98787 1.21612 0.97809 0.95893 1.02523 1.18593 0.84244 0.92218 1.00266 1.84782 1.20402 1.90482 1.37055 1.21467 0.92617 1.00205 1.02970 0.92810 0.99011 0.99122 0.91433 0.91211 0.93303 0.93528 0.74733 0.84005 0.83821 0.90308 0.88784 0.85126 0.83934 0.84677 0.73394 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.13 4.37 5.67 86.38 0.49 4.86 16 12 N -0.71 -17.98 5.56 -463.06 -2.57 -20.55 16 13 C 0.47 12.19 7.07 87.66 0.62 12.81 16 14 O -0.59 -20.29 16.25 -3.04 -0.05 -20.34 16 15 C 0.09 1.68 3.14 44.17 0.14 1.82 16 16 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 17 N -0.81 -14.12 8.37 -171.82 -1.44 -15.55 16 18 C -0.07 -1.01 4.98 29.85 0.15 -0.86 16 19 C -0.05 -0.85 4.95 -19.88 -0.10 -0.95 16 20 C -0.11 -1.66 9.30 22.28 0.21 -1.45 16 21 C -0.11 -1.52 10.04 22.25 0.22 -1.29 16 22 C -0.16 -2.40 9.99 22.37 0.22 -2.18 16 23 C 0.09 1.50 6.71 22.51 0.15 1.66 16 24 O -0.51 -7.70 13.50 -92.38 -1.25 -8.95 16 25 C -0.15 -2.48 9.64 22.37 0.22 -2.27 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.42 7.79 8.47 -92.71 -0.79 7.00 16 34 H 0.35 6.03 9.06 -89.70 -0.81 5.22 16 35 H 0.35 6.35 8.58 -89.69 -0.77 5.58 16 36 H 0.08 1.28 8.08 -2.39 -0.02 1.27 16 37 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 38 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 41 H 0.41 2.18 9.06 -74.06 -0.67 1.51 16 42 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -72.88 360.74 -1.65 -74.53 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -1.98 Total: 21.68 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.32 Total: -19.65 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -3.73 Total: -92.81 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.30 Total: -29.29 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.88 -1.65 -74.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220191663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.008 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds