Wall clock time and date at job start Tue Mar 31 2020 07:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46712 * 2 1 4 4 C 1.53006 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47324 * 304.99797 * 4 3 2 6 6 C 1.53009 * 109.46930 * 184.99722 * 4 3 2 7 7 N 1.46500 * 109.47092 * 65.00290 * 4 3 2 8 8 C 1.34768 * 119.99966 * 204.99657 * 7 4 3 9 9 O 1.21596 * 120.00422 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00250 * 179.97438 * 8 7 4 11 11 C 1.40023 * 120.00366 * 175.49359 * 10 8 7 12 12 C 1.38912 * 120.00355 * 214.85249 * 11 10 8 13 13 C 1.38012 * 120.00076 * 179.78724 * 12 11 10 14 14 C 1.38902 * 119.99890 * 0.47129 * 13 12 11 15 15 O 1.35787 * 120.00134 * 179.76415 * 14 13 12 16 16 C 1.34810 * 117.00436 * 185.35772 * 15 14 13 17 17 H 1.08005 * 119.99729 * 354.96603 * 16 15 14 18 18 C 1.38630 * 120.00248 * 174.96192 * 16 15 14 19 19 N 1.31567 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99993 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47183 * 90.00272 * 20 18 16 22 22 H 1.48501 * 109.47380 * 210.00032 * 20 18 16 23 23 H 1.48502 * 109.47421 * 330.00589 * 20 18 16 24 24 C 1.38907 * 120.00374 * 359.78053 * 14 13 12 25 25 C 1.38008 * 119.99695 * 359.97438 * 24 14 13 26 26 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47893 * 299.99907 * 1 2 3 28 28 H 1.08998 * 109.47121 * 60.00483 * 1 2 3 29 29 H 1.08998 * 109.47121 * 119.99517 * 2 1 3 30 30 H 1.08999 * 109.47437 * 239.99816 * 2 1 3 31 31 H 1.08998 * 109.47391 * 299.99358 * 3 2 1 32 32 H 1.09002 * 109.47069 * 60.00196 * 3 2 1 33 33 H 1.08999 * 109.47449 * 300.00640 * 6 4 3 34 34 H 1.09005 * 109.46763 * 60.00481 * 6 4 3 35 35 H 1.09002 * 109.46938 * 180.02562 * 6 4 3 36 36 H 0.96995 * 120.00054 * 24.99843 * 7 4 3 37 37 H 0.96997 * 119.99926 * 355.49660 * 10 8 7 38 38 H 1.08003 * 119.99936 * 0.02562 * 12 11 10 39 39 H 1.08000 * 120.00193 * 180.23249 * 13 12 11 40 40 H 0.97000 * 119.99897 * 179.97438 * 19 18 16 41 41 H 1.07994 * 120.00092 * 179.97438 * 24 14 13 42 42 H 1.08000 * 119.99756 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0798 2.8797 0.1263 7 7 4.0588 0.8587 -1.2509 8 6 5.2807 0.2923 -1.2981 9 8 5.9777 0.2662 -0.3021 10 7 5.7303 -0.2453 -2.4493 11 6 7.0346 -0.7490 -2.5245 12 6 7.7579 -0.6311 -3.7046 13 6 9.0451 -1.1236 -3.7772 14 6 9.6138 -1.7460 -2.6733 15 8 10.8786 -2.2349 -2.7463 16 6 11.3308 -2.9240 -1.6796 17 1 10.7261 -2.9968 -0.7877 18 6 12.5721 -3.5394 -1.7275 19 7 13.3090 -3.4504 -2.8138 20 14 13.1985 -4.4950 -0.2497 21 1 12.7682 -5.9122 -0.3580 22 1 14.6815 -4.4297 -0.2103 23 1 12.6436 -3.9029 0.9941 24 6 8.8888 -1.8686 -1.4949 25 6 7.6035 -1.3716 -1.4206 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.7168 3.4690 -0.7157 34 1 3.7161 3.3141 1.0575 35 1 5.1698 2.8797 0.1263 36 1 3.5030 0.8799 -2.0456 37 1 5.1503 -0.2833 -3.2259 38 1 7.3143 -0.1505 -4.5641 39 1 9.6087 -1.0286 -4.6936 40 1 14.1777 -3.8807 -2.8472 41 1 9.3309 -2.3528 -0.6368 42 1 7.0396 -1.4672 -0.5045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043572777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:20 Heat of formation + Delta-G solvation = -43.045160 kcal Electronic energy + Delta-G solvation = -22609.313530 eV Core-core repulsion = 19168.865080 eV Total energy + Delta-G solvation = -3440.448450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35946 -38.82047 -37.36176 -36.16236 -33.94050 -33.58542 -32.14230 -30.80142 -30.12328 -27.61204 -26.97855 -25.21527 -22.82286 -22.12842 -21.68886 -20.86106 -20.44609 -18.54452 -17.83537 -17.25447 -16.60260 -15.78042 -15.27974 -14.86980 -14.63828 -14.46916 -14.27715 -13.80966 -13.58173 -13.55280 -13.46703 -12.98557 -12.79945 -12.57118 -12.45514 -12.39036 -11.79295 -11.67564 -11.53162 -11.45315 -11.23048 -11.03017 -10.97012 -10.88385 -10.70565 -10.39392 -9.88660 -9.61942 -9.15178 -9.09136 -8.63251 -8.13532 -6.85518 -6.39409 -3.96813 2.20765 2.31715 2.77794 3.16860 3.18540 3.23442 3.40339 4.02351 4.26844 4.39165 4.63961 4.65823 4.66191 5.05835 5.12748 5.14988 5.21008 5.31211 5.31979 5.44896 5.50469 5.58471 5.71800 5.73424 5.77054 5.80669 5.90775 5.98141 6.10125 6.19804 6.25753 6.36553 6.52161 6.75381 6.80480 7.02893 7.17229 7.27012 7.40518 7.50839 7.85929 8.05937 8.12747 8.75752 9.06696 9.76982 10.78784 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.002790 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.586250 B =10034.863413 C =10431.960196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.126 4.126 4 C 0.159 3.841 5 H 0.089 0.911 6 C -0.165 4.165 7 N -0.743 5.743 8 C 0.699 3.301 9 O -0.575 6.575 10 N -0.676 5.676 11 C 0.054 3.946 12 C -0.096 4.096 13 C -0.178 4.178 14 C 0.145 3.855 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.267 1.267 24 C -0.219 4.219 25 C -0.064 4.064 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.396 0.604 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.269 0.731 41 H 0.130 0.870 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.295 8.541 2.411 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.164 4.164 4 C 0.054 3.946 5 H 0.107 0.893 6 C -0.224 4.224 7 N -0.399 5.399 8 C 0.400 3.600 9 O -0.452 6.452 10 N -0.323 5.323 11 C -0.039 4.039 12 C -0.117 4.117 13 C -0.198 4.198 14 C 0.091 3.909 15 O -0.082 6.082 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.239 4.239 25 C -0.084 4.084 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.147 0.853 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.256 8.475 3.112 24.018 hybrid contribution -0.275 -0.404 -0.048 0.491 sum -22.532 8.071 3.064 24.129 Atomic orbital electron populations 1.21778 0.95873 1.01674 1.01655 1.21536 0.95628 0.96542 1.02631 1.21939 0.94002 0.97511 1.02958 1.20818 0.92800 0.94190 0.86761 0.89341 1.22211 1.02593 0.95971 1.01576 1.45214 1.17257 1.63593 1.13835 1.15983 0.81706 0.78332 0.84014 1.90929 1.56528 1.63696 1.34051 1.42307 1.14026 1.62945 1.13061 1.17040 0.84773 1.05605 0.96480 1.20323 0.93673 1.01207 0.96453 1.19966 0.95191 1.06604 0.98036 1.19407 0.85709 0.92836 0.92975 1.83972 1.22139 1.61088 1.41023 1.21329 1.02438 1.30105 0.92684 0.89065 1.25268 0.95430 0.97331 0.98537 1.70045 1.11376 1.41657 1.26913 0.85721 0.78241 0.79500 0.80045 1.19921 1.20313 1.19159 1.21112 0.95592 1.08139 0.99097 1.20884 0.95122 0.94763 0.97668 0.92767 0.92787 0.92845 0.91797 0.91819 0.91489 0.90390 0.92731 0.91846 0.91723 0.77444 0.76982 0.86870 0.86122 0.92112 0.85276 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.15 0.37 -0.50 16 2 C -0.13 -0.85 5.82 -26.73 -0.16 -1.01 16 3 C -0.13 -0.79 4.75 -26.73 -0.13 -0.92 16 4 C 0.16 1.47 2.57 -67.92 -0.17 1.29 16 5 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 6 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 7 N -0.74 -7.36 4.53 -58.67 -0.27 -7.63 16 8 C 0.70 10.25 8.37 -86.93 -0.73 9.52 16 9 O -0.58 -11.01 13.44 5.28 0.07 -10.94 16 10 N -0.68 -9.45 5.35 -14.18 -0.08 -9.52 16 11 C 0.05 0.98 6.30 -83.62 -0.53 0.46 16 12 C -0.10 -1.71 9.96 -39.42 -0.39 -2.10 16 13 C -0.18 -3.78 9.99 -39.42 -0.39 -4.17 16 14 C 0.14 3.58 6.65 -39.09 -0.26 3.32 16 15 O -0.18 -5.19 9.75 -0.01 0.00 -5.19 16 16 C -0.39 -11.13 9.48 30.88 0.29 -10.84 16 17 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 20 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16 25 C -0.06 -1.34 8.69 -39.42 -0.34 -1.68 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.39 2.71 8.62 -40.82 -0.35 2.35 16 37 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 38 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 39 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.13 3.02 5.63 -52.49 -0.30 2.72 16 42 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -33.76 351.80 -7.97 -41.73 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.19 Total: 7.47 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.54 Total: -12.28 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.42 Total: -42.10 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.07 Total: -16.13 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.76 -7.97 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.314 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds