Wall clock time and date at job start Tue Mar 31 2020 07:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46712 * 2 1 4 4 C 1.53006 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47324 * 304.99797 * 4 3 2 6 6 C 1.53009 * 109.46930 * 184.99722 * 4 3 2 7 7 N 1.46500 * 109.47092 * 65.00290 * 4 3 2 8 8 C 1.34768 * 119.99966 * 204.99657 * 7 4 3 9 9 O 1.21596 * 120.00422 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00250 * 179.97438 * 8 7 4 11 11 C 1.40023 * 120.00366 * 175.49359 * 10 8 7 12 12 C 1.38912 * 120.00355 * 214.85249 * 11 10 8 13 13 C 1.38012 * 120.00076 * 179.78724 * 12 11 10 14 14 C 1.38902 * 119.99890 * 0.47129 * 13 12 11 15 15 O 1.35787 * 120.00134 * 179.76415 * 14 13 12 16 16 C 1.34810 * 117.00436 * 185.35772 * 15 14 13 17 17 H 1.08005 * 119.99729 * 354.96603 * 16 15 14 18 18 C 1.38630 * 120.00248 * 174.96192 * 16 15 14 19 19 N 1.31567 * 119.99663 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99993 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47183 * 90.00272 * 20 18 16 22 22 H 1.48501 * 109.47380 * 210.00032 * 20 18 16 23 23 H 1.48502 * 109.47421 * 330.00589 * 20 18 16 24 24 C 1.38907 * 120.00374 * 359.78053 * 14 13 12 25 25 C 1.38008 * 119.99695 * 359.97438 * 24 14 13 26 26 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47893 * 299.99907 * 1 2 3 28 28 H 1.08998 * 109.47121 * 60.00483 * 1 2 3 29 29 H 1.08998 * 109.47121 * 119.99517 * 2 1 3 30 30 H 1.08999 * 109.47437 * 239.99816 * 2 1 3 31 31 H 1.08998 * 109.47391 * 299.99358 * 3 2 1 32 32 H 1.09002 * 109.47069 * 60.00196 * 3 2 1 33 33 H 1.08999 * 109.47449 * 300.00640 * 6 4 3 34 34 H 1.09005 * 109.46763 * 60.00481 * 6 4 3 35 35 H 1.09002 * 109.46938 * 180.02562 * 6 4 3 36 36 H 0.96995 * 120.00054 * 24.99843 * 7 4 3 37 37 H 0.96997 * 119.99926 * 355.49660 * 10 8 7 38 38 H 1.08003 * 119.99936 * 0.02562 * 12 11 10 39 39 H 1.08000 * 120.00193 * 180.23249 * 13 12 11 40 40 H 0.97000 * 119.99897 * 179.97438 * 19 18 16 41 41 H 1.07994 * 120.00092 * 179.97438 * 24 14 13 42 42 H 1.08000 * 119.99756 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0798 2.8797 0.1263 7 7 4.0588 0.8587 -1.2509 8 6 5.2807 0.2923 -1.2981 9 8 5.9777 0.2662 -0.3021 10 7 5.7303 -0.2453 -2.4493 11 6 7.0346 -0.7490 -2.5245 12 6 7.7579 -0.6311 -3.7046 13 6 9.0451 -1.1236 -3.7772 14 6 9.6138 -1.7460 -2.6733 15 8 10.8786 -2.2349 -2.7463 16 6 11.3308 -2.9240 -1.6796 17 1 10.7261 -2.9968 -0.7877 18 6 12.5721 -3.5394 -1.7275 19 7 13.3090 -3.4504 -2.8138 20 14 13.1985 -4.4950 -0.2497 21 1 12.7682 -5.9122 -0.3580 22 1 14.6815 -4.4297 -0.2103 23 1 12.6436 -3.9029 0.9941 24 6 8.8888 -1.8686 -1.4949 25 6 7.6035 -1.3716 -1.4206 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9564 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.7168 3.4690 -0.7157 34 1 3.7161 3.3141 1.0575 35 1 5.1698 2.8797 0.1263 36 1 3.5030 0.8799 -2.0456 37 1 5.1503 -0.2833 -3.2259 38 1 7.3143 -0.1505 -4.5641 39 1 9.6087 -1.0286 -4.6936 40 1 14.1777 -3.8807 -2.8472 41 1 9.3309 -2.3528 -0.6368 42 1 7.0396 -1.4672 -0.5045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043572777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:19 Heat of formation + Delta-G solvation = -65.840446 kcal Electronic energy + Delta-G solvation = -22610.302008 eV Core-core repulsion = 19168.865080 eV Total energy + Delta-G solvation = -3441.436928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64293 -40.50096 -38.64650 -37.46513 -35.38429 -34.43658 -34.08137 -31.85495 -31.70045 -29.19763 -27.56535 -27.22473 -24.16860 -23.57557 -22.60371 -21.86035 -21.62899 -20.08473 -19.45514 -18.85576 -18.10755 -16.83184 -16.56798 -16.25494 -16.07834 -15.53753 -15.49579 -15.39384 -15.20941 -14.81207 -14.61923 -14.31266 -14.10474 -13.58239 -13.57359 -13.34906 -13.19201 -13.07530 -12.88388 -12.68800 -12.45037 -12.36963 -12.12951 -11.84456 -11.61695 -11.50327 -11.42552 -11.25220 -10.92407 -10.52216 -10.05479 -9.81360 -8.55614 -8.45974 -6.12512 0.54707 0.61901 1.34983 1.43387 1.52072 1.67129 2.14865 2.18780 2.84636 3.16820 3.28726 3.53999 3.74589 4.05968 4.11597 4.12820 4.15193 4.40501 4.50128 4.51031 4.64407 4.68380 4.74919 4.78816 4.84434 4.92567 5.01698 5.06700 5.10759 5.16105 5.29537 5.31398 5.34406 5.37940 5.45684 5.50110 5.60667 5.67264 5.73022 6.02960 6.07238 6.22449 6.98757 7.11053 7.60158 7.78812 8.76819 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.002790 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.586250 B =10034.863413 C =10431.960196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.114 4.114 4 C 0.157 3.843 5 H 0.061 0.939 6 C -0.161 4.161 7 N -0.719 5.719 8 C 0.695 3.305 9 O -0.622 6.622 10 N -0.663 5.663 11 C 0.083 3.917 12 C -0.079 4.079 13 C -0.179 4.179 14 C 0.104 3.896 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.096 0.904 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.016 2.984 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.258 1.258 24 C -0.228 4.228 25 C -0.077 4.077 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.412 0.588 37 H 0.422 0.578 38 H 0.167 0.833 39 H 0.129 0.871 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 9.872 2.020 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.152 4.152 4 C 0.052 3.948 5 H 0.079 0.921 6 C -0.219 4.219 7 N -0.375 5.375 8 C 0.396 3.604 9 O -0.503 6.503 10 N -0.313 5.313 11 C -0.012 4.012 12 C -0.099 4.099 13 C -0.199 4.199 14 C 0.054 3.946 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.113 0.887 18 C -0.218 4.218 19 N -0.557 5.557 20 Si 0.835 3.165 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.182 1.182 24 C -0.248 4.248 25 C -0.097 4.097 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.249 0.751 37 H 0.260 0.740 38 H 0.184 0.816 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.890 9.848 2.683 27.830 hybrid contribution 0.434 -0.620 0.039 0.758 sum -25.456 9.229 2.721 27.214 Atomic orbital electron populations 1.21753 0.94805 1.01765 1.02403 1.21532 0.96540 0.96679 1.01693 1.21874 0.91169 0.97508 1.04629 1.20933 0.94874 0.93669 0.85326 0.92122 1.22167 1.00247 0.96148 1.03335 1.45044 1.15570 1.61837 1.15092 1.16196 0.82621 0.78343 0.83252 1.90919 1.58209 1.65350 1.35772 1.42097 1.12719 1.62356 1.14124 1.17150 0.86190 1.02449 0.95415 1.20743 0.91920 0.99450 0.97792 1.20313 0.96598 1.05666 0.97282 1.19931 0.85336 0.94555 0.94828 1.83933 1.24444 1.63375 1.41716 1.21754 1.03216 1.30786 0.93178 0.88682 1.26516 0.95227 0.98153 1.01952 1.70175 1.12158 1.43788 1.29535 0.84626 0.77815 0.78065 0.75954 1.18661 1.19293 1.18203 1.21087 0.96625 1.08699 0.98412 1.20933 0.94347 0.95577 0.98866 0.93093 0.92342 0.91779 0.93404 0.92213 0.89357 0.89113 0.90920 0.90215 0.95227 0.75070 0.73981 0.81560 0.85286 0.91804 0.86762 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.58 16 2 C -0.13 -1.41 5.82 30.59 0.18 -1.23 16 3 C -0.11 -1.05 4.75 30.60 0.15 -0.90 16 4 C 0.16 2.55 2.57 45.00 0.12 2.67 16 5 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 6 C -0.16 -2.60 9.48 71.99 0.68 -1.91 16 7 N -0.72 -12.17 4.53 -457.80 -2.08 -14.24 16 8 C 0.70 18.91 8.37 179.06 1.50 20.41 16 9 O -0.62 -23.59 13.44 -4.02 -0.05 -23.65 16 10 N -0.66 -16.28 5.35 -317.05 -1.69 -17.97 16 11 C 0.08 2.82 6.30 38.16 0.24 3.06 16 12 C -0.08 -2.56 9.96 22.38 0.22 -2.34 16 13 C -0.18 -7.50 9.99 22.38 0.22 -7.28 16 14 C 0.10 5.36 6.65 22.59 0.15 5.51 16 15 O -0.23 -14.04 9.75 -22.94 -0.22 -14.26 16 16 C -0.41 -24.96 9.48 67.91 0.64 -24.32 16 17 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 18 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 19 N -0.92 -57.17 13.67 21.61 0.30 -56.88 16 20 Si 1.02 44.46 29.55 68.60 2.03 46.49 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 C -0.23 -11.03 9.16 22.38 0.20 -10.82 16 25 C -0.08 -3.21 8.69 22.38 0.19 -3.02 16 26 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.70 7.75 -2.39 -0.02 0.68 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 35 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.41 3.89 8.62 -92.71 -0.80 3.09 16 37 H 0.42 6.33 8.84 -92.71 -0.82 5.51 16 38 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.11 5.72 5.63 -2.91 -0.02 5.70 16 42 H 0.12 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -79.85 351.80 3.38 -76.47 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.58 Total: 25.57 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 5.68 Total: -21.52 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -3.47 Total: -89.09 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.28 Total: -37.91 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -79.85 3.38 -76.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043572777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.628 kcal (2) G-P(sol) polarization free energy of solvation -79.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds