Wall clock time and date at job start Tue Mar 31 2020 07:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47402 * 2 1 4 4 C 1.53008 * 109.47399 * 175.00106 * 3 2 1 5 5 C 1.52999 * 109.47231 * 185.00093 * 4 3 2 6 6 N 1.46504 * 109.47109 * 295.00239 * 3 2 1 7 7 C 1.34766 * 120.00023 * 84.99935 * 6 3 2 8 8 O 1.21590 * 120.00334 * 0.02562 * 7 6 3 9 9 N 1.34781 * 120.00148 * 180.02562 * 7 6 3 10 10 C 1.39943 * 120.00102 * 175.49551 * 9 7 6 11 11 C 1.38953 * 120.03820 * 35.10790 * 10 9 7 12 12 C 1.38157 * 120.06960 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.13640 * 359.72220 * 12 11 10 14 14 C 1.38905 * 120.06857 * 0.55410 * 13 12 11 15 15 O 1.35757 * 120.03422 * 179.72476 * 14 13 12 16 16 C 1.34832 * 116.99794 * 174.38814 * 15 14 13 17 17 H 1.07994 * 120.00396 * 5.02508 * 16 15 14 18 18 C 1.38656 * 119.99543 * 185.03749 * 16 15 14 19 19 N 1.31561 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99919 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47189 * 89.99325 * 20 18 16 22 22 H 1.48499 * 109.47585 * 209.99404 * 20 18 16 23 23 H 1.48502 * 109.47057 * 329.99852 * 20 18 16 24 24 C 1.38706 * 120.03157 * 215.12984 * 10 9 7 25 25 H 1.08992 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46403 * 299.99693 * 1 2 3 27 27 H 1.08997 * 109.46815 * 59.99976 * 1 2 3 28 28 H 1.09003 * 109.47047 * 239.99950 * 2 1 3 29 29 H 1.08997 * 109.47320 * 120.00181 * 2 1 3 30 30 H 1.09007 * 109.47407 * 55.00288 * 3 2 1 31 31 H 1.08998 * 109.46730 * 305.00015 * 4 3 2 32 32 H 1.08996 * 109.46597 * 64.99779 * 4 3 2 33 33 H 1.08994 * 109.47097 * 59.99485 * 5 4 3 34 34 H 1.08998 * 109.46671 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.46524 * 300.00097 * 5 4 3 36 36 H 0.97000 * 119.99469 * 264.99847 * 6 3 2 37 37 H 0.96999 * 119.99484 * 355.49304 * 9 7 6 38 38 H 1.08003 * 119.96499 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.93180 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.96536 * 180.27216 * 13 12 11 41 41 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.07230 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5650 1.4442 0.1257 5 6 4.0647 2.8849 0.2511 6 7 1.6525 2.0974 -1.2518 7 6 0.4353 2.6643 -1.3669 8 8 -0.3411 2.6326 -0.4317 9 7 0.0785 3.2665 -2.5187 10 6 -1.2174 3.7720 -2.6718 11 6 -1.8794 4.3298 -1.5849 12 6 -3.1590 4.8286 -1.7352 13 6 -3.7823 4.7796 -2.9673 14 6 -3.1281 4.2180 -4.0564 15 8 -3.7434 4.1653 -5.2654 16 6 -3.0124 3.7151 -6.3050 17 1 -2.0130 3.3405 -6.1405 18 6 -3.5438 3.7334 -7.5856 19 7 -4.7614 4.1896 -7.7860 20 14 -2.5309 3.1105 -9.0261 21 1 -2.7767 1.6579 -9.2127 22 1 -2.9215 3.8410 -10.2586 23 1 -1.0891 3.3372 -8.7522 24 6 -1.8427 3.7162 -3.9087 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6055 1.9815 0.8419 31 1 3.8572 0.8799 1.0113 32 1 4.0030 0.9834 -0.7597 33 1 3.6265 3.3456 1.1364 34 1 5.1510 2.8861 0.3402 35 1 3.7724 3.4491 -0.6345 36 1 2.2720 2.1230 -1.9978 37 1 0.7201 3.3495 -3.2415 38 1 -1.3933 4.3728 -0.6213 39 1 -3.6715 5.2613 -0.8887 40 1 -4.7810 5.1743 -3.0826 41 1 -5.1333 4.2021 -8.6818 42 1 -1.3303 3.2832 -4.7551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048488694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:37 Heat of formation + Delta-G solvation = -39.355977 kcal Electronic energy + Delta-G solvation = -23253.902744 eV Core-core repulsion = 19813.614269 eV Total energy + Delta-G solvation = -3440.288475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51502 -38.87877 -37.32160 -36.02738 -34.18616 -32.41829 -32.21583 -32.06299 -29.20822 -28.37004 -26.44445 -25.26333 -22.61537 -22.17174 -21.74085 -20.78801 -20.43613 -18.58596 -17.84969 -17.25366 -16.41603 -15.67256 -15.26734 -14.95557 -14.59682 -14.22081 -14.14853 -14.01033 -13.92335 -13.59079 -13.43594 -13.05251 -12.92051 -12.54564 -12.33786 -11.83199 -11.69243 -11.49061 -11.45528 -11.32021 -11.07838 -11.00657 -10.87673 -10.82170 -10.73272 -10.44375 -9.91212 -9.50803 -9.41841 -9.01772 -8.78075 -7.66679 -7.09653 -6.42677 -4.02394 2.11410 2.45402 2.74886 3.12346 3.12494 3.17430 3.38038 3.97169 4.24949 4.42486 4.65077 4.73960 4.78581 5.10297 5.12276 5.23331 5.27709 5.32773 5.42960 5.59043 5.63609 5.71670 5.78854 5.84090 5.96229 6.00106 6.06141 6.13810 6.15375 6.30160 6.31404 6.50669 6.54033 6.63589 6.86127 7.05326 7.15567 7.34020 7.39304 7.47333 7.88259 8.01756 8.09835 8.71700 9.02799 9.74295 10.75586 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.003645 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.198032 B = 7680.089025 C = 8441.595139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.162 3.838 4 C -0.131 4.131 5 C -0.152 4.152 6 N -0.741 5.741 7 C 0.703 3.297 8 O -0.566 6.566 9 N -0.684 5.684 10 C 0.197 3.803 11 C -0.203 4.203 12 C -0.065 4.065 13 C -0.202 4.202 14 C 0.168 3.832 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.258 4.258 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.401 0.599 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.269 0.731 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -4.917 12.418 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.057 3.943 4 C -0.169 4.169 5 C -0.210 4.210 6 N -0.397 5.397 7 C 0.404 3.596 8 O -0.442 6.442 9 N -0.331 5.331 10 C 0.103 3.897 11 C -0.224 4.224 12 C -0.084 4.084 13 C -0.222 4.222 14 C 0.114 3.886 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.280 4.280 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.235 0.765 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.674 -4.892 13.034 20.964 hybrid contribution 1.204 -0.403 -1.583 2.029 sum 16.878 -5.295 11.451 21.072 Atomic orbital electron populations 1.21787 0.94485 1.00346 1.03574 1.21986 0.97509 0.96072 1.01748 1.20940 0.93773 0.92944 0.86625 1.21836 0.94304 0.97989 1.02797 1.21765 1.00636 0.96226 1.02343 1.45206 1.15879 1.61315 1.17260 1.15875 0.82227 0.78261 0.83256 1.90935 1.51111 1.63946 1.38187 1.42595 1.13292 1.60477 1.16718 1.17183 0.83083 0.95132 0.94277 1.20716 0.96828 1.06199 0.98644 1.20554 0.94277 0.97814 0.95756 1.20253 1.01631 1.08490 0.91802 1.19050 0.90081 0.92068 0.87375 1.84009 1.37913 1.73568 1.12666 1.21264 0.99137 1.42001 0.84397 0.89295 1.25263 0.96499 0.96992 0.97750 1.70038 1.14275 1.42900 1.22651 0.85736 0.79189 0.78791 0.79807 1.19955 1.20267 1.19335 1.20793 0.97314 1.12624 0.97301 0.93961 0.92168 0.92035 0.92144 0.91469 0.89262 0.90404 0.91478 0.92530 0.92699 0.92519 0.77320 0.76489 0.85647 0.86730 0.86495 0.92069 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.51 37.16 0.32 -1.53 16 2 C -0.13 -1.28 5.61 -26.73 -0.15 -1.43 16 3 C 0.16 1.51 2.26 -67.93 -0.15 1.36 16 4 C -0.13 -0.85 5.47 -26.73 -0.15 -1.00 16 5 C -0.15 -1.03 9.80 37.16 0.36 -0.67 16 6 N -0.74 -7.61 4.49 -58.67 -0.26 -7.88 16 7 C 0.70 10.29 6.97 -86.92 -0.61 9.69 16 8 O -0.57 -10.10 10.91 5.29 0.06 -10.04 16 9 N -0.68 -10.33 5.34 -14.24 -0.08 -10.41 16 10 C 0.20 3.80 6.29 -83.72 -0.53 3.27 16 11 C -0.20 -3.96 8.69 -39.35 -0.34 -4.30 16 12 C -0.07 -1.25 10.03 -39.64 -0.40 -1.65 16 13 C -0.20 -4.41 9.99 -39.36 -0.39 -4.80 16 14 C 0.17 4.12 6.65 -39.13 -0.26 3.86 16 15 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 16 C -0.39 -10.91 9.49 30.89 0.29 -10.61 16 17 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 20 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.26 -5.63 9.08 -39.21 -0.36 -5.99 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 27 H 0.06 0.96 5.64 -51.93 -0.29 0.67 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 36 H 0.39 3.03 8.62 -40.82 -0.35 2.68 16 37 H 0.40 4.79 8.84 -40.82 -0.36 4.43 16 38 H 0.13 2.42 6.22 -52.48 -0.33 2.09 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.13 2.73 5.63 -52.49 -0.30 2.44 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -32.63 344.13 -7.86 -40.49 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.04 Total: 9.85 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.45 Total: -12.83 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.42 Total: -42.89 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.14 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.63 -7.86 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.133 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds