Wall clock time and date at job start Tue Mar 31 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47402 * 2 1 4 4 C 1.53008 * 109.47399 * 175.00106 * 3 2 1 5 5 C 1.52999 * 109.47231 * 185.00093 * 4 3 2 6 6 N 1.46504 * 109.47109 * 295.00239 * 3 2 1 7 7 C 1.34766 * 120.00023 * 84.99935 * 6 3 2 8 8 O 1.21590 * 120.00334 * 0.02562 * 7 6 3 9 9 N 1.34781 * 120.00148 * 180.02562 * 7 6 3 10 10 C 1.39943 * 120.00102 * 175.49551 * 9 7 6 11 11 C 1.38953 * 120.03820 * 35.10790 * 10 9 7 12 12 C 1.38157 * 120.06960 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.13640 * 359.72220 * 12 11 10 14 14 C 1.38905 * 120.06857 * 0.55410 * 13 12 11 15 15 O 1.35757 * 120.03422 * 179.72476 * 14 13 12 16 16 C 1.34832 * 116.99794 * 174.38814 * 15 14 13 17 17 H 1.07994 * 120.00396 * 5.02508 * 16 15 14 18 18 C 1.38656 * 119.99543 * 185.03749 * 16 15 14 19 19 N 1.31561 * 120.00137 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99919 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47189 * 89.99325 * 20 18 16 22 22 H 1.48499 * 109.47585 * 209.99404 * 20 18 16 23 23 H 1.48502 * 109.47057 * 329.99852 * 20 18 16 24 24 C 1.38706 * 120.03157 * 215.12984 * 10 9 7 25 25 H 1.08992 * 109.47156 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46403 * 299.99693 * 1 2 3 27 27 H 1.08997 * 109.46815 * 59.99976 * 1 2 3 28 28 H 1.09003 * 109.47047 * 239.99950 * 2 1 3 29 29 H 1.08997 * 109.47320 * 120.00181 * 2 1 3 30 30 H 1.09007 * 109.47407 * 55.00288 * 3 2 1 31 31 H 1.08998 * 109.46730 * 305.00015 * 4 3 2 32 32 H 1.08996 * 109.46597 * 64.99779 * 4 3 2 33 33 H 1.08994 * 109.47097 * 59.99485 * 5 4 3 34 34 H 1.08998 * 109.46671 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.46524 * 300.00097 * 5 4 3 36 36 H 0.97000 * 119.99469 * 264.99847 * 6 3 2 37 37 H 0.96999 * 119.99484 * 355.49304 * 9 7 6 38 38 H 1.08003 * 119.96499 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.93180 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.96536 * 180.27216 * 13 12 11 41 41 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.07230 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5650 1.4442 0.1257 5 6 4.0647 2.8849 0.2511 6 7 1.6525 2.0974 -1.2518 7 6 0.4353 2.6643 -1.3669 8 8 -0.3411 2.6326 -0.4317 9 7 0.0785 3.2665 -2.5187 10 6 -1.2174 3.7720 -2.6718 11 6 -1.8794 4.3298 -1.5849 12 6 -3.1590 4.8286 -1.7352 13 6 -3.7823 4.7796 -2.9673 14 6 -3.1281 4.2180 -4.0564 15 8 -3.7434 4.1653 -5.2654 16 6 -3.0124 3.7151 -6.3050 17 1 -2.0130 3.3405 -6.1405 18 6 -3.5438 3.7334 -7.5856 19 7 -4.7614 4.1896 -7.7860 20 14 -2.5309 3.1105 -9.0261 21 1 -2.7767 1.6579 -9.2127 22 1 -2.9215 3.8410 -10.2586 23 1 -1.0891 3.3372 -8.7522 24 6 -1.8427 3.7162 -3.9087 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6055 1.9815 0.8419 31 1 3.8572 0.8799 1.0113 32 1 4.0030 0.9834 -0.7597 33 1 3.6265 3.3456 1.1364 34 1 5.1510 2.8861 0.3402 35 1 3.7724 3.4491 -0.6345 36 1 2.2720 2.1230 -1.9978 37 1 0.7201 3.3495 -3.2415 38 1 -1.3933 4.3728 -0.6213 39 1 -3.6715 5.2613 -0.8887 40 1 -4.7810 5.1743 -3.0826 41 1 -5.1333 4.2021 -8.6818 42 1 -1.3303 3.2832 -4.7551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048488694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:36 Heat of formation + Delta-G solvation = -61.020757 kcal Electronic energy + Delta-G solvation = -23254.842199 eV Core-core repulsion = 19813.614269 eV Total energy + Delta-G solvation = -3441.227930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76392 -40.54027 -38.65864 -37.38921 -35.59079 -34.24163 -33.26533 -32.94031 -30.85870 -29.98724 -27.42685 -27.12163 -23.95531 -23.45245 -22.86196 -21.91144 -21.58696 -20.09780 -19.41350 -18.91871 -17.54473 -16.95015 -16.73915 -16.52305 -16.10589 -15.77054 -15.51920 -15.29009 -14.95844 -14.71769 -14.66232 -14.43261 -14.14663 -13.83642 -13.55579 -13.28811 -13.13135 -12.79375 -12.67804 -12.48810 -12.40662 -12.24779 -12.10716 -11.87777 -11.74566 -11.57335 -11.42772 -11.20803 -10.96628 -10.68803 -9.99812 -9.29950 -8.81796 -8.44935 -6.13825 0.48240 0.74231 1.36334 1.45954 1.54000 1.61862 2.15062 2.19230 2.86776 3.17733 3.23848 3.52236 3.73667 4.06310 4.14122 4.17198 4.36464 4.37798 4.47591 4.51399 4.59425 4.66450 4.71593 4.79031 4.93632 5.01458 5.04987 5.07808 5.13179 5.14412 5.17557 5.23389 5.39942 5.43986 5.47528 5.54091 5.64277 5.70428 5.74584 6.02535 6.03974 6.25234 6.99156 7.02844 7.55728 7.79775 8.78264 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.003645 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.198032 B = 7680.089025 C = 8441.595139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.161 3.839 4 C -0.121 4.121 5 C -0.153 4.153 6 N -0.720 5.720 7 C 0.701 3.299 8 O -0.599 6.599 9 N -0.678 5.678 10 C 0.207 3.793 11 C -0.197 4.197 12 C -0.054 4.054 13 C -0.216 4.216 14 C 0.135 3.865 15 O -0.228 6.228 16 C -0.413 4.413 17 H 0.103 0.897 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.249 1.249 24 C -0.262 4.262 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.409 0.591 37 H 0.417 0.583 38 H 0.135 0.865 39 H 0.151 0.849 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.195 -6.077 13.341 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.056 3.944 4 C -0.159 4.159 5 C -0.210 4.210 6 N -0.377 5.377 7 C 0.401 3.599 8 O -0.477 6.477 9 N -0.326 5.326 10 C 0.111 3.889 11 C -0.218 4.218 12 C -0.072 4.072 13 C -0.236 4.236 14 C 0.084 3.916 15 O -0.134 6.134 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.173 1.173 24 C -0.284 4.284 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.246 0.754 37 H 0.254 0.746 38 H 0.152 0.848 39 H 0.169 0.831 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.219 -6.066 13.998 24.538 hybrid contribution 0.213 -0.043 -1.548 1.563 sum 19.433 -6.110 12.450 23.873 Atomic orbital electron populations 1.21726 0.97116 0.99954 1.01113 1.21973 0.94911 0.96449 1.03428 1.21075 0.95827 0.92344 0.85152 1.21793 0.91573 0.98149 1.04366 1.21772 1.01499 0.96248 1.01531 1.45103 1.14412 1.59815 1.18335 1.16019 0.83161 0.78238 0.82435 1.90913 1.52460 1.65126 1.39228 1.42466 1.12071 1.60287 1.17746 1.17174 0.84581 0.93960 0.93156 1.21000 0.96898 1.05008 0.98930 1.20926 0.94118 0.96470 0.95690 1.20468 1.01992 1.08918 0.92259 1.19564 0.91598 0.93554 0.86929 1.83978 1.39605 1.75743 1.14097 1.21819 0.99890 1.42305 0.84926 0.87949 1.26599 0.97776 0.96951 1.00715 1.70192 1.16673 1.45516 1.23556 0.84588 0.78129 0.78261 0.75236 1.19031 1.19733 1.17251 1.20808 0.96605 1.12567 0.98382 0.93327 0.93875 0.95151 0.90994 0.89175 0.91342 0.88781 0.89808 0.93593 0.91330 0.93172 0.75412 0.74570 0.84766 0.83087 0.86464 0.91867 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.51 71.98 0.61 -2.87 16 2 C -0.13 -2.11 5.61 30.59 0.17 -1.94 16 3 C 0.16 2.58 2.26 44.99 0.10 2.68 16 4 C -0.12 -1.12 5.47 30.60 0.17 -0.95 16 5 C -0.15 -1.63 9.80 71.98 0.71 -0.93 16 6 N -0.72 -13.09 4.49 -457.81 -2.05 -15.15 16 7 C 0.70 19.42 6.97 179.06 1.25 20.66 16 8 O -0.60 -20.84 10.91 -4.00 -0.04 -20.88 16 9 N -0.68 -19.38 5.34 -317.23 -1.69 -21.07 16 10 C 0.21 7.80 6.29 38.13 0.24 8.04 16 11 C -0.20 -7.44 8.69 22.42 0.19 -7.24 16 12 C -0.05 -2.00 10.03 22.23 0.22 -1.77 16 13 C -0.22 -9.62 9.99 22.41 0.22 -9.39 16 14 C 0.13 6.82 6.65 22.56 0.15 6.97 16 15 O -0.23 -13.74 9.76 -22.84 -0.22 -13.96 16 16 C -0.41 -23.83 9.49 67.92 0.64 -23.19 16 17 H 0.10 5.35 5.20 -2.91 -0.02 5.33 16 18 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 19 N -0.92 -56.47 13.67 21.61 0.30 -56.17 16 20 Si 1.02 42.10 29.55 68.60 2.03 44.12 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 24 C -0.26 -11.52 9.08 22.51 0.20 -11.31 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 1.18 7.84 -2.39 -0.02 1.16 16 27 H 0.03 0.92 5.64 -2.39 -0.01 0.91 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.44 7.58 -2.38 -0.02 1.42 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.59 7.75 -2.38 -0.02 0.58 16 36 H 0.41 4.99 8.62 -92.71 -0.80 4.19 16 37 H 0.42 9.10 8.84 -92.71 -0.82 8.28 16 38 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 39 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.13 5.52 5.63 -2.91 -0.02 5.50 16 Total: -1.00 -75.10 344.13 3.09 -72.01 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.57 Total: 33.17 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 5.35 Total: -22.07 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.45 Total: -92.39 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.27 Total: -34.85 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -75.10 3.09 -72.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048488694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.990 kcal (2) G-P(sol) polarization free energy of solvation -75.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds