Wall clock time and date at job start Tue Mar 31 2020 07:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47301 * 120.00256 * 2 1 3 5 5 N 1.46504 * 109.46969 * 64.99879 * 4 2 1 6 6 C 1.46494 * 120.00087 * 269.99950 * 5 4 2 7 7 C 1.34784 * 119.99728 * 89.99952 * 5 4 2 8 8 O 1.21581 * 119.99971 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99771 * 180.02562 * 7 5 4 10 10 C 1.39945 * 120.00303 * 174.69267 * 9 7 5 11 11 C 1.38962 * 120.03076 * 326.34202 * 10 9 7 12 12 C 1.38160 * 120.06637 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.13414 * 359.71878 * 12 11 10 14 14 C 1.38903 * 120.07541 * 0.55828 * 13 12 11 15 15 O 1.35748 * 120.03979 * 179.71538 * 14 13 12 16 16 C 1.34825 * 117.00174 * 173.81949 * 15 14 13 17 17 H 1.07998 * 120.00242 * 354.59912 * 16 15 14 18 18 C 1.38651 * 119.99955 * 174.59544 * 16 15 14 19 19 N 1.31559 * 120.00241 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00306 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46655 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47074 * 120.00034 * 20 18 16 23 23 H 1.48496 * 109.47068 * 240.00338 * 20 18 16 24 24 C 1.38700 * 120.03782 * 146.36633 * 10 9 7 25 25 H 1.09000 * 109.47433 * 59.99529 * 1 2 3 26 26 H 1.09006 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47013 * 299.99863 * 1 2 3 28 28 H 1.09007 * 109.47247 * 240.00176 * 2 1 3 29 29 H 1.08998 * 109.46755 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47318 * 300.00541 * 3 2 1 31 31 H 1.08997 * 109.46394 * 60.00549 * 3 2 1 32 32 H 1.08992 * 109.47424 * 304.99974 * 4 2 1 33 33 H 1.09004 * 109.46765 * 184.99695 * 4 2 1 34 34 H 1.08998 * 109.47348 * 270.00371 * 6 5 4 35 35 H 1.09003 * 109.46954 * 30.00146 * 6 5 4 36 36 H 1.09007 * 109.47372 * 149.99881 * 6 5 4 37 37 H 0.97006 * 120.00159 * 354.68564 * 9 7 5 38 38 H 1.08001 * 119.96171 * 0.02562 * 11 10 9 39 39 H 1.07998 * 119.92710 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.95750 * 180.27523 * 13 12 11 41 41 H 0.96993 * 120.00379 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.07244 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7611 7 6 2.4716 -3.0331 0.6113 8 8 3.5323 -2.6737 0.1381 9 7 2.1148 -4.3316 0.5568 10 6 2.9106 -5.2473 -0.1407 11 6 3.5917 -4.8473 -1.2840 12 6 4.3772 -5.7509 -1.9735 13 6 4.4928 -7.0528 -1.5256 14 6 3.8099 -7.4604 -0.3867 15 8 3.9194 -8.7412 0.0494 16 6 3.3363 -9.0384 1.2282 17 1 2.8879 -8.2553 1.8215 18 6 3.3124 -10.3495 1.6787 19 7 3.8591 -11.3034 0.9563 20 14 2.5040 -10.7615 3.3116 21 1 1.9673 -9.5203 3.9252 22 1 1.3939 -11.7216 3.0860 23 1 3.5077 -11.3700 4.2212 24 6 3.0200 -6.5551 0.3081 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6055 -0.2619 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 0.5171 -2.8372 2.8072 35 1 -0.3484 -1.7532 1.6918 36 1 0.0042 -3.4299 1.2090 37 1 1.3063 -4.6316 1.0012 38 1 3.5069 -3.8291 -1.6339 39 1 4.9059 -5.4375 -2.8615 40 1 5.1111 -7.7556 -2.0643 41 1 3.8420 -12.2206 1.2713 42 1 2.4917 -6.8684 1.1964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049459346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:28 Heat of formation + Delta-G solvation = -27.158956 kcal Electronic energy + Delta-G solvation = -23207.892734 eV Core-core repulsion = 19768.133162 eV Total energy + Delta-G solvation = -3439.759572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57696 -38.86833 -37.28792 -36.12134 -34.63782 -33.70402 -32.20070 -29.35130 -28.52257 -28.12326 -27.13449 -25.68318 -25.17689 -21.97985 -21.77362 -20.55975 -19.63247 -18.32937 -17.87426 -17.21397 -16.21835 -15.90938 -15.20616 -15.00806 -14.93957 -14.45319 -14.06451 -13.96885 -13.72723 -13.52196 -13.23122 -13.04284 -12.91810 -12.86578 -12.40501 -12.34787 -11.95847 -11.73784 -11.54961 -11.41370 -11.14889 -11.06954 -10.99116 -10.87691 -10.69395 -10.41969 -9.97119 -9.58590 -9.45084 -8.79816 -8.74474 -7.66383 -7.09884 -6.43215 -4.02678 2.09588 2.43143 2.64009 3.11757 3.12786 3.18413 3.32651 3.92582 3.97439 4.60988 4.65707 4.67724 4.79079 4.85109 5.12026 5.13026 5.19585 5.31265 5.34151 5.39509 5.43068 5.55881 5.63481 5.65611 5.74963 5.88088 6.02610 6.03880 6.05772 6.12841 6.26344 6.30313 6.43174 6.61422 6.83014 7.04847 7.13958 7.26373 7.37416 7.46348 7.86633 7.98591 8.01953 8.65893 9.02475 9.73886 10.75131 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003512 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.763799 B = 7971.845456 C = 8959.266270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.139 3.861 5 N -0.632 5.632 6 C 0.071 3.929 7 C 0.704 3.296 8 O -0.568 6.568 9 N -0.682 5.682 10 C 0.198 3.802 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.202 4.202 14 C 0.169 3.831 15 O -0.177 6.177 16 C -0.390 4.390 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.258 4.258 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.269 0.731 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 20.047 1.359 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.201 4.201 4 C 0.015 3.985 5 N -0.370 5.370 6 C -0.073 4.073 7 C 0.406 3.594 8 O -0.444 6.444 9 N -0.330 5.330 10 C 0.104 3.896 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.222 4.222 14 C 0.115 3.885 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.280 4.280 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.051 19.899 0.969 21.488 hybrid contribution -1.021 -0.379 1.186 1.610 sum -9.072 19.520 2.155 21.633 Atomic orbital electron populations 1.21947 0.95354 1.01802 1.01488 1.21544 0.95988 0.96400 0.99580 1.21755 1.01366 0.95334 1.01690 1.21403 1.01490 0.78415 0.97157 1.47011 1.20014 1.07655 1.62282 1.21898 0.85617 1.01191 0.98561 1.15851 0.83515 0.80726 0.79305 1.90934 1.22868 1.78815 1.51771 1.42759 1.27897 1.06332 1.56042 1.17203 0.93519 0.87865 0.90977 1.20560 1.05035 1.00162 0.96747 1.20523 0.97131 0.92221 0.98292 1.20233 1.06329 0.96637 0.99035 1.19060 0.91872 0.85449 0.92083 1.84017 1.66562 1.20899 1.36615 1.21309 1.37294 0.94032 0.94039 0.89261 1.25269 0.97223 0.94425 0.99611 1.70044 1.41459 1.00865 1.37462 0.85668 0.78744 0.78890 0.80211 1.19236 1.20186 1.20159 1.20777 1.09038 0.93157 1.05027 0.92845 0.92338 0.92843 0.90569 0.92338 0.92536 0.92735 0.90730 0.89643 0.92533 0.90243 0.91391 0.76220 0.86286 0.86673 0.86427 0.92108 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.18 37.16 0.30 -0.81 16 2 C -0.12 -1.05 3.13 -90.62 -0.28 -1.33 16 3 C -0.14 -1.08 9.19 37.16 0.34 -0.73 16 4 C 0.14 1.37 4.90 -4.04 -0.02 1.35 16 5 N -0.63 -7.24 2.70 -187.35 -0.51 -7.75 16 6 C 0.07 0.56 9.23 59.84 0.55 1.11 16 7 C 0.70 11.22 8.01 -86.91 -0.70 10.52 16 8 O -0.57 -11.09 13.63 5.29 0.07 -11.02 16 9 N -0.68 -10.95 5.17 -14.24 -0.07 -11.02 16 10 C 0.20 3.93 6.27 -83.71 -0.52 3.41 16 11 C -0.20 -4.06 8.65 -39.34 -0.34 -4.40 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 13 C -0.20 -4.44 9.99 -39.36 -0.39 -4.83 16 14 C 0.17 4.17 6.64 -39.13 -0.26 3.91 16 15 O -0.18 -5.09 9.76 0.07 0.00 -5.09 16 16 C -0.39 -10.90 9.44 30.88 0.29 -10.61 16 17 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 20 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.26 -5.71 9.04 -39.21 -0.35 -6.06 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.46 5.89 -51.93 -0.31 0.16 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.47 5.98 -51.93 -0.31 0.16 16 36 H 0.07 0.51 6.45 -51.93 -0.33 0.18 16 37 H 0.40 5.21 6.63 -40.82 -0.27 4.94 16 38 H 0.12 2.35 6.43 -52.49 -0.34 2.01 16 39 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 40 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -33.42 343.30 -7.36 -40.78 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.88 Total: 7.24 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.88 Total: -9.12 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.18 Total: -43.36 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.07 Total: -16.11 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.42 -7.36 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049459346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.621 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds