Wall clock time and date at job start Tue Mar 31 2020 07:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47301 * 120.00256 * 2 1 3 5 5 N 1.46504 * 109.46969 * 64.99879 * 4 2 1 6 6 C 1.46494 * 120.00087 * 269.99950 * 5 4 2 7 7 C 1.34784 * 119.99728 * 89.99952 * 5 4 2 8 8 O 1.21581 * 119.99971 * 0.02562 * 7 5 4 9 9 N 1.34774 * 119.99771 * 180.02562 * 7 5 4 10 10 C 1.39945 * 120.00303 * 174.69267 * 9 7 5 11 11 C 1.38962 * 120.03076 * 326.34202 * 10 9 7 12 12 C 1.38160 * 120.06637 * 180.02562 * 11 10 9 13 13 C 1.38167 * 120.13414 * 359.71878 * 12 11 10 14 14 C 1.38903 * 120.07541 * 0.55828 * 13 12 11 15 15 O 1.35748 * 120.03979 * 179.71538 * 14 13 12 16 16 C 1.34825 * 117.00174 * 173.81949 * 15 14 13 17 17 H 1.07998 * 120.00242 * 354.59912 * 16 15 14 18 18 C 1.38651 * 119.99955 * 174.59544 * 16 15 14 19 19 N 1.31559 * 120.00241 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00306 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46655 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47074 * 120.00034 * 20 18 16 23 23 H 1.48496 * 109.47068 * 240.00338 * 20 18 16 24 24 C 1.38700 * 120.03782 * 146.36633 * 10 9 7 25 25 H 1.09000 * 109.47433 * 59.99529 * 1 2 3 26 26 H 1.09006 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47013 * 299.99863 * 1 2 3 28 28 H 1.09007 * 109.47247 * 240.00176 * 2 1 3 29 29 H 1.08998 * 109.46755 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47318 * 300.00541 * 3 2 1 31 31 H 1.08997 * 109.46394 * 60.00549 * 3 2 1 32 32 H 1.08992 * 109.47424 * 304.99974 * 4 2 1 33 33 H 1.09004 * 109.46765 * 184.99695 * 4 2 1 34 34 H 1.08998 * 109.47348 * 270.00371 * 6 5 4 35 35 H 1.09003 * 109.46954 * 30.00146 * 6 5 4 36 36 H 1.09007 * 109.47372 * 149.99881 * 6 5 4 37 37 H 0.97006 * 120.00159 * 354.68564 * 9 7 5 38 38 H 1.08001 * 119.96171 * 0.02562 * 11 10 9 39 39 H 1.07998 * 119.92710 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.95750 * 180.27523 * 13 12 11 41 41 H 0.96993 * 120.00379 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.07244 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7611 7 6 2.4716 -3.0331 0.6113 8 8 3.5323 -2.6737 0.1381 9 7 2.1148 -4.3316 0.5568 10 6 2.9106 -5.2473 -0.1407 11 6 3.5917 -4.8473 -1.2840 12 6 4.3772 -5.7509 -1.9735 13 6 4.4928 -7.0528 -1.5256 14 6 3.8099 -7.4604 -0.3867 15 8 3.9194 -8.7412 0.0494 16 6 3.3363 -9.0384 1.2282 17 1 2.8879 -8.2553 1.8215 18 6 3.3124 -10.3495 1.6787 19 7 3.8591 -11.3034 0.9563 20 14 2.5040 -10.7615 3.3116 21 1 1.9673 -9.5203 3.9252 22 1 1.3939 -11.7216 3.0860 23 1 3.5077 -11.3700 4.2212 24 6 3.0200 -6.5551 0.3081 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6055 -0.2619 2.1369 33 1 3.1264 -0.6444 1.2950 34 1 0.5171 -2.8372 2.8072 35 1 -0.3484 -1.7532 1.6918 36 1 0.0042 -3.4299 1.2090 37 1 1.3063 -4.6316 1.0012 38 1 3.5069 -3.8291 -1.6339 39 1 4.9059 -5.4375 -2.8615 40 1 5.1111 -7.7556 -2.0643 41 1 3.8420 -12.2206 1.2713 42 1 2.4917 -6.8684 1.1964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049459346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:27 Heat of formation + Delta-G solvation = -48.058100 kcal Electronic energy + Delta-G solvation = -23208.798989 eV Core-core repulsion = 19768.133162 eV Total energy + Delta-G solvation = -3440.665827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86076 -40.56027 -38.62791 -37.50428 -35.90383 -34.81983 -34.18160 -30.98808 -30.18782 -28.83407 -27.78719 -27.34195 -26.50568 -23.49929 -23.39575 -21.53226 -20.91631 -19.78242 -19.49527 -18.73334 -17.52541 -17.04244 -16.67976 -16.49214 -16.18216 -15.88449 -15.66617 -15.49338 -15.04355 -14.76886 -14.56973 -14.20335 -13.92260 -13.70265 -13.56295 -13.51023 -13.21012 -12.97545 -12.76182 -12.71618 -12.62693 -12.38255 -12.13618 -12.07926 -11.78722 -11.58663 -11.49532 -11.27407 -11.09947 -10.72529 -9.73392 -9.30804 -8.83081 -8.45807 -6.14518 0.44913 0.70856 1.36399 1.44667 1.51687 1.54815 2.02688 2.18525 2.83424 2.85741 3.18404 3.49907 3.90819 3.97741 4.11009 4.13633 4.21859 4.33339 4.44417 4.47028 4.57082 4.63452 4.68691 4.73676 4.79889 4.84255 4.89099 5.00422 5.01870 5.04980 5.11965 5.25832 5.27434 5.39736 5.44273 5.48936 5.61882 5.67822 5.69048 5.87302 6.02676 6.20380 6.79293 6.98645 7.41344 7.78420 8.77560 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003512 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.763799 B = 7971.845456 C = 8959.266270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.135 3.865 5 N -0.621 5.621 6 C 0.062 3.938 7 C 0.698 3.302 8 O -0.609 6.609 9 N -0.675 5.675 10 C 0.205 3.795 11 C -0.199 4.199 12 C -0.051 4.051 13 C -0.215 4.215 14 C 0.137 3.863 15 O -0.226 6.226 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.267 1.267 23 H -0.271 1.271 24 C -0.261 4.261 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.120 0.880 41 H 0.273 0.727 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 22.644 2.767 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.012 3.988 5 N -0.357 5.357 6 C -0.080 4.080 7 C 0.400 3.600 8 O -0.489 6.489 9 N -0.325 5.325 10 C 0.110 3.890 11 C -0.220 4.220 12 C -0.069 4.069 13 C -0.235 4.235 14 C 0.086 3.914 15 O -0.132 6.132 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.192 1.192 23 H -0.196 1.196 24 C -0.283 4.283 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.233 22.577 2.389 24.903 hybrid contribution -0.363 -0.887 0.626 1.145 sum -10.596 21.690 3.015 24.328 Atomic orbital electron populations 1.21919 0.93656 1.01927 1.02672 1.21473 0.97324 0.96794 0.97556 1.21732 1.00733 0.94459 1.02888 1.21596 1.00498 0.77664 0.99032 1.47100 1.20372 1.07488 1.60722 1.22204 0.84205 1.02482 0.99094 1.16061 0.83612 0.80863 0.79459 1.90901 1.24882 1.79409 1.53683 1.42628 1.27950 1.06102 1.55791 1.17218 0.93250 0.87638 0.90929 1.20833 1.04314 1.00432 0.96458 1.20900 0.96257 0.90779 0.98967 1.20462 1.06482 0.97892 0.98669 1.19563 0.93398 0.84928 0.93549 1.83984 1.68591 1.23047 1.37582 1.21823 1.37526 0.94917 0.94529 0.88126 1.26591 0.97624 0.93854 1.03910 1.70190 1.43976 1.01485 1.40169 0.84527 0.77706 0.79262 0.74683 1.17251 1.19233 1.19631 1.20781 1.08856 0.93780 1.04873 0.92681 0.92694 0.90700 0.93992 0.93390 0.92064 0.90790 0.87334 0.92030 0.91131 0.87557 0.91000 0.74413 0.85582 0.82908 0.86177 0.91821 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.18 71.98 0.59 -1.11 16 2 C -0.11 -1.82 3.13 -10.79 -0.03 -1.86 16 3 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 4 C 0.13 2.37 4.90 86.38 0.42 2.80 16 5 N -0.62 -12.82 2.70 -864.91 -2.33 -15.16 16 6 C 0.06 0.76 9.23 127.77 1.18 1.94 16 7 C 0.70 21.35 8.01 179.05 1.43 22.79 16 8 O -0.61 -23.54 13.63 -3.97 -0.05 -23.59 16 9 N -0.68 -20.72 5.17 -317.24 -1.64 -22.36 16 10 C 0.21 8.00 6.27 38.13 0.24 8.23 16 11 C -0.20 -7.71 8.65 22.42 0.19 -7.52 16 12 C -0.05 -1.90 10.03 22.23 0.22 -1.68 16 13 C -0.22 -9.56 9.99 22.41 0.22 -9.34 16 14 C 0.14 6.95 6.64 22.56 0.15 7.10 16 15 O -0.23 -13.59 9.76 -22.66 -0.22 -13.81 16 16 C -0.41 -23.76 9.44 67.92 0.64 -23.12 16 17 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 18 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 19 N -0.92 -56.21 13.67 21.61 0.30 -55.91 16 20 Si 1.02 42.13 29.55 68.60 2.03 44.15 16 21 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 C -0.26 -11.65 9.04 22.51 0.20 -11.45 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.69 5.89 -2.38 -0.01 0.67 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.06 1.41 7.42 -2.39 -0.02 1.39 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.78 5.98 -2.39 -0.01 0.77 16 36 H 0.07 0.85 6.45 -2.38 -0.02 0.84 16 37 H 0.42 10.02 6.63 -92.70 -0.61 9.40 16 38 H 0.13 4.79 6.43 -2.91 -0.02 4.78 16 39 H 0.15 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.13 5.61 5.71 -2.91 -0.02 5.60 16 Total: -1.00 -76.66 343.30 5.09 -71.57 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.42 Total: 30.28 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 6.59 Total: -15.17 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.68 Total: -93.43 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.28 Total: -37.41 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -76.66 5.09 -71.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049459346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.515 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds