Wall clock time and date at job start Tue Mar 31 2020 07:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35428 * 117.00154 * 2 1 4 4 N 1.32241 * 119.79497 * 359.97438 * 3 2 1 5 5 C 1.31885 * 121.79688 * 180.02562 * 4 3 2 6 6 C 1.38354 * 121.18713 * 0.02562 * 5 4 3 7 7 C 1.38339 * 119.45753 * 0.24595 * 6 5 4 8 8 C 1.39986 * 118.34846 * 359.51619 * 7 6 5 9 9 C 1.47529 * 120.59833 * 180.21758 * 8 7 6 10 10 O 1.21587 * 119.99888 * 149.54942 * 9 8 7 11 11 N 1.34774 * 119.99844 * 329.54787 * 9 8 7 12 12 C 1.46497 * 120.00198 * 7.09954 * 11 9 8 13 13 C 1.50693 * 109.47075 * 98.77313 * 12 11 9 14 14 H 1.07997 * 120.00244 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00313 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99752 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00533 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46817 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47225 * 120.00081 * 17 15 13 20 20 H 1.48503 * 109.47515 * 240.00253 * 17 15 13 21 21 C 1.46502 * 119.99891 * 187.10194 * 11 9 8 22 22 C 1.53006 * 109.46824 * 83.33346 * 21 11 9 23 23 C 1.52998 * 109.47094 * 65.00234 * 22 21 11 24 24 C 1.53009 * 109.46773 * 185.00035 * 22 21 11 25 25 H 1.08993 * 109.47322 * 59.99827 * 1 2 3 26 26 H 1.08997 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46839 * 299.99861 * 1 2 3 28 28 H 1.07997 * 119.40409 * 180.02562 * 5 4 3 29 29 H 1.07991 * 120.27340 * 179.97438 * 6 5 4 30 30 H 1.07994 * 120.82528 * 179.75133 * 7 6 5 31 31 H 1.09002 * 109.47402 * 218.77765 * 12 11 9 32 32 H 1.09001 * 109.46856 * 338.77236 * 12 11 9 33 33 H 0.97001 * 120.00402 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.46888 * 203.33127 * 21 11 9 35 35 H 1.08992 * 109.46955 * 323.33327 * 21 11 9 36 36 H 1.08998 * 109.47082 * 304.99229 * 22 21 11 37 37 H 1.09006 * 109.46707 * 179.97438 * 23 22 21 38 38 H 1.08999 * 109.46948 * 299.99160 * 23 22 21 39 39 H 1.08994 * 109.47408 * 59.99990 * 23 22 21 40 40 H 1.09002 * 109.47013 * 59.99703 * 24 22 21 41 41 H 1.09001 * 109.46971 * 179.97438 * 24 22 21 42 42 H 1.08998 * 109.46754 * 300.00235 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 -0.0005 5 6 1.8770 3.5084 -0.0010 6 6 3.2525 3.6576 -0.0016 7 6 4.0587 2.5334 -0.0068 8 6 3.4449 1.2752 -0.0009 9 6 4.2570 0.0436 -0.0012 10 8 3.8360 -0.9622 0.5368 11 7 5.4654 0.0333 -0.5979 12 6 6.0406 1.2799 -1.1090 13 6 7.0282 1.8242 -0.1094 14 1 7.2097 1.2944 0.8140 15 6 7.7003 2.9988 -0.3737 16 7 7.4798 3.6438 -1.4984 17 14 8.9241 3.6739 0.8656 18 1 8.9904 2.7674 2.0400 19 1 10.2659 3.7667 0.2362 20 1 8.4893 5.0239 1.3057 21 6 6.2037 -1.2246 -0.7356 22 6 5.7082 -1.9738 -1.9742 23 6 6.0476 -1.1660 -3.2285 24 6 6.3892 -3.3420 -2.0490 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2484 4.3866 -0.0010 29 1 3.6932 4.6435 -0.0024 30 1 5.1348 2.6241 -0.0114 31 1 6.5491 1.0852 -2.0533 32 1 5.2456 2.0085 -1.2680 33 1 7.9523 4.4703 -1.6843 34 1 7.2675 -1.0118 -0.8410 35 1 6.0420 -1.8394 0.1498 36 1 4.6285 -2.1085 -1.9097 37 1 5.6950 -1.7000 -4.1110 38 1 5.5624 -0.1914 -3.1752 39 1 7.1272 -1.0314 -3.2930 40 1 6.1475 -3.9174 -1.1554 41 1 6.0359 -3.8759 -2.9312 42 1 7.4689 -3.2073 -2.1134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061444574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:28 Heat of formation + Delta-G solvation = -23.403851 kcal Electronic energy + Delta-G solvation = -24559.822571 eV Core-core repulsion = 21120.225832 eV Total energy + Delta-G solvation = -3439.596739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50793 -38.78339 -37.47447 -35.93993 -34.44210 -32.46059 -31.82653 -30.35892 -27.83441 -27.04659 -26.75270 -25.85361 -23.78584 -22.65275 -22.40694 -20.19449 -18.85947 -17.86924 -16.80513 -16.66834 -16.29550 -15.68453 -15.26843 -14.88022 -14.59243 -14.41572 -14.31001 -13.73812 -13.41181 -13.17847 -12.95841 -12.74803 -12.47686 -12.32369 -12.03919 -11.88524 -11.47685 -11.37608 -11.14811 -11.05881 -10.95144 -10.83569 -10.61204 -10.39946 -10.26655 -10.08546 -9.82103 -9.52635 -9.21123 -8.87906 -8.53371 -8.12326 -7.64953 -6.34268 -4.44421 1.26450 1.78061 3.13340 3.23307 3.27933 3.40820 3.56887 3.90706 4.19790 4.35195 4.62637 4.95510 5.23693 5.35622 5.39973 5.42382 5.44153 5.48772 5.49405 5.54077 5.73363 5.85305 5.92687 5.96511 6.06711 6.08372 6.20884 6.32855 6.40274 6.47401 6.50855 6.61942 6.69716 6.77993 6.80330 7.05683 7.13502 7.50863 7.60445 7.63225 7.88698 8.13839 8.35070 8.68247 9.05197 9.25242 10.69461 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.007610 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.974165 B = 3678.248733 C = 5597.648327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.283 6.283 3 C 0.356 3.644 4 N -0.559 5.559 5 C 0.147 3.853 6 C -0.224 4.224 7 C -0.018 4.018 8 C -0.205 4.205 9 C 0.566 3.434 10 O -0.553 6.553 11 N -0.589 5.589 12 C 0.206 3.794 13 C -0.545 4.545 14 H 0.067 0.933 15 C 0.068 3.932 16 N -0.881 5.881 17 Si 0.896 3.104 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.129 3.871 22 C -0.112 4.112 23 C -0.144 4.144 24 C -0.140 4.140 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.212 0.788 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -2.903 -1.056 7.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.188 6.188 3 C 0.176 3.824 4 N -0.284 5.284 5 C -0.009 4.009 6 C -0.245 4.245 7 C -0.042 4.042 8 C -0.211 4.211 9 C 0.354 3.646 10 O -0.433 6.433 11 N -0.319 5.319 12 C 0.087 3.913 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.137 4.137 16 N -0.518 5.518 17 Si 0.723 3.277 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.006 3.994 22 C -0.132 4.132 23 C -0.201 4.201 24 C -0.198 4.198 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.172 0.828 29 H 0.156 0.844 30 H 0.228 0.772 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.717 -3.634 -0.899 8.577 hybrid contribution 1.337 0.895 0.472 1.676 sum -6.380 -2.740 -0.427 6.957 Atomic orbital electron populations 1.22814 0.78403 1.02506 1.01914 1.86433 1.21686 1.23915 1.86740 1.19795 0.88212 0.84715 0.89658 1.67336 1.40326 0.98661 1.22057 1.22496 0.93269 0.93340 0.91783 1.22023 0.94257 1.00483 1.07704 1.23738 1.05956 0.89484 0.85011 1.20037 0.90927 0.95979 1.14121 1.17765 0.81314 0.86840 0.78683 1.90696 1.71962 1.34868 1.45752 1.47981 1.16986 1.09963 1.56941 1.20330 0.94636 0.80876 0.95480 1.21570 1.23628 1.07990 1.05130 0.91496 1.25007 0.96564 0.96533 0.95560 1.69943 1.41725 1.17027 1.23130 0.86453 0.80914 0.79031 0.81328 1.19439 1.20657 1.20562 1.21327 0.96191 0.85032 0.96867 1.21502 1.00715 0.94946 0.96002 1.21865 1.01609 1.00381 0.96276 1.21741 1.00462 0.96383 1.01238 0.92710 0.89017 0.92625 0.82787 0.84383 0.77177 0.94155 0.92267 0.92181 0.90092 0.91267 0.91308 0.93738 0.91994 0.92644 0.92811 0.93053 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.60 16 2 O -0.28 -5.48 9.02 -36.81 -0.33 -5.81 16 3 C 0.36 7.10 7.48 -16.61 -0.12 6.97 16 4 N -0.56 -9.89 9.21 -12.98 -0.12 -10.01 16 5 C 0.15 2.28 11.17 -17.49 -0.20 2.08 16 6 C -0.22 -3.80 10.09 -39.50 -0.40 -4.20 16 7 C -0.02 -0.36 7.60 -38.89 -0.30 -0.66 16 8 C -0.20 -4.36 5.60 -104.69 -0.59 -4.95 16 9 C 0.57 12.82 7.30 -12.47 -0.09 12.73 16 10 O -0.55 -13.48 15.46 -13.55 -0.21 -13.69 16 11 N -0.59 -12.63 2.18 -176.30 -0.39 -13.02 16 12 C 0.21 4.69 3.95 -5.20 -0.02 4.67 16 13 C -0.55 -13.26 7.57 -34.44 -0.26 -13.52 16 14 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.07 1.66 5.33 -17.82 -0.10 1.57 16 16 N -0.88 -22.25 13.29 55.43 0.74 -21.52 16 17 Si 0.90 19.30 29.54 -169.99 -5.02 14.28 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 C 0.13 2.45 4.83 -4.04 -0.02 2.43 16 22 C -0.11 -1.86 3.07 -90.61 -0.28 -2.14 16 23 C -0.14 -2.33 8.38 37.16 0.31 -2.02 16 24 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 25 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.21 4.72 3.27 -52.49 -0.17 4.54 16 31 H 0.04 0.96 6.42 -51.93 -0.33 0.62 16 32 H 0.06 1.39 3.97 -52.02 -0.21 1.18 16 33 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 35 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.12 6.25 -51.93 -0.32 0.80 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -28.39 342.85 -6.86 -35.25 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.03 Total: 6.33 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.66 Total: 3.02 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.23 Total: -44.54 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.54 Total: -19.50 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.39 -6.86 -35.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061444574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.843 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds