Wall clock time and date at job start Tue Mar 31 2020 07:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35428 * 117.00154 * 2 1 4 4 N 1.32241 * 119.79497 * 359.97438 * 3 2 1 5 5 C 1.31885 * 121.79688 * 180.02562 * 4 3 2 6 6 C 1.38354 * 121.18713 * 0.02562 * 5 4 3 7 7 C 1.38339 * 119.45753 * 0.24595 * 6 5 4 8 8 C 1.39986 * 118.34846 * 359.51619 * 7 6 5 9 9 C 1.47529 * 120.59833 * 180.21758 * 8 7 6 10 10 O 1.21587 * 119.99888 * 149.54942 * 9 8 7 11 11 N 1.34774 * 119.99844 * 329.54787 * 9 8 7 12 12 C 1.46497 * 120.00198 * 7.09954 * 11 9 8 13 13 C 1.50693 * 109.47075 * 98.77313 * 12 11 9 14 14 H 1.07997 * 120.00244 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00313 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99752 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00533 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46817 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47225 * 120.00081 * 17 15 13 20 20 H 1.48503 * 109.47515 * 240.00253 * 17 15 13 21 21 C 1.46502 * 119.99891 * 187.10194 * 11 9 8 22 22 C 1.53006 * 109.46824 * 83.33346 * 21 11 9 23 23 C 1.52998 * 109.47094 * 65.00234 * 22 21 11 24 24 C 1.53009 * 109.46773 * 185.00035 * 22 21 11 25 25 H 1.08993 * 109.47322 * 59.99827 * 1 2 3 26 26 H 1.08997 * 109.47380 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46839 * 299.99861 * 1 2 3 28 28 H 1.07997 * 119.40409 * 180.02562 * 5 4 3 29 29 H 1.07991 * 120.27340 * 179.97438 * 6 5 4 30 30 H 1.07994 * 120.82528 * 179.75133 * 7 6 5 31 31 H 1.09002 * 109.47402 * 218.77765 * 12 11 9 32 32 H 1.09001 * 109.46856 * 338.77236 * 12 11 9 33 33 H 0.97001 * 120.00402 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.46888 * 203.33127 * 21 11 9 35 35 H 1.08992 * 109.46955 * 323.33327 * 21 11 9 36 36 H 1.08998 * 109.47082 * 304.99229 * 22 21 11 37 37 H 1.09006 * 109.46707 * 179.97438 * 23 22 21 38 38 H 1.08999 * 109.46948 * 299.99160 * 23 22 21 39 39 H 1.08994 * 109.47408 * 59.99990 * 23 22 21 40 40 H 1.09002 * 109.47013 * 59.99703 * 24 22 21 41 41 H 1.09001 * 109.46971 * 179.97438 * 24 22 21 42 42 H 1.08998 * 109.46754 * 300.00235 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 -0.0005 5 6 1.8770 3.5084 -0.0010 6 6 3.2525 3.6576 -0.0016 7 6 4.0587 2.5334 -0.0068 8 6 3.4449 1.2752 -0.0009 9 6 4.2570 0.0436 -0.0012 10 8 3.8360 -0.9622 0.5368 11 7 5.4654 0.0333 -0.5979 12 6 6.0406 1.2799 -1.1090 13 6 7.0282 1.8242 -0.1094 14 1 7.2097 1.2944 0.8140 15 6 7.7003 2.9988 -0.3737 16 7 7.4798 3.6438 -1.4984 17 14 8.9241 3.6739 0.8656 18 1 8.9904 2.7674 2.0400 19 1 10.2659 3.7667 0.2362 20 1 8.4893 5.0239 1.3057 21 6 6.2037 -1.2246 -0.7356 22 6 5.7082 -1.9738 -1.9742 23 6 6.0476 -1.1660 -3.2285 24 6 6.3892 -3.3420 -2.0490 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.2484 4.3866 -0.0010 29 1 3.6932 4.6435 -0.0024 30 1 5.1348 2.6241 -0.0114 31 1 6.5491 1.0852 -2.0533 32 1 5.2456 2.0085 -1.2680 33 1 7.9523 4.4703 -1.6843 34 1 7.2675 -1.0118 -0.8410 35 1 6.0420 -1.8394 0.1498 36 1 4.6285 -2.1085 -1.9097 37 1 5.6950 -1.7000 -4.1110 38 1 5.5624 -0.1914 -3.1752 39 1 7.1272 -1.0314 -3.2930 40 1 6.1475 -3.9174 -1.1554 41 1 6.0359 -3.8759 -2.9312 42 1 7.4689 -3.2073 -2.1134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061444574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:27 Heat of formation + Delta-G solvation = -39.730242 kcal Electronic energy + Delta-G solvation = -24560.530537 eV Core-core repulsion = 21120.225832 eV Total energy + Delta-G solvation = -3440.304704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00232 -40.37798 -38.87668 -37.54526 -36.05814 -34.27291 -33.29258 -31.75119 -29.61109 -28.28862 -28.02688 -27.34420 -25.43767 -24.28274 -23.85825 -21.63542 -20.41977 -19.27509 -18.66821 -18.13079 -17.98814 -17.09560 -16.78538 -16.40668 -16.26007 -15.98308 -15.74033 -15.06812 -14.87348 -14.70049 -14.42864 -14.19738 -14.16271 -13.71545 -13.52994 -13.08048 -12.99964 -12.83727 -12.68810 -12.62109 -12.34911 -12.18018 -12.11667 -12.07285 -11.80170 -11.58877 -11.55875 -11.10578 -10.83805 -10.59926 -10.22578 -9.60038 -9.33205 -8.22447 -6.38882 -0.18515 0.31692 1.41517 1.46854 1.56125 1.88996 2.10818 2.27725 2.43521 2.84515 3.05511 3.31712 3.73183 3.97773 4.02896 4.05288 4.14961 4.18860 4.36187 4.42001 4.44850 4.53983 4.63937 4.68763 4.72534 4.78124 4.89228 4.91018 5.00710 5.04665 5.13615 5.16898 5.25404 5.31341 5.40295 5.44902 5.56183 5.66974 5.85720 6.00926 6.24705 6.54135 6.74155 6.81321 7.26808 7.38323 8.81045 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010914 B = 0.007610 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.974165 B = 3678.248733 C = 5597.648327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.348 3.652 4 N -0.555 5.555 5 C 0.164 3.836 6 C -0.222 4.222 7 C -0.033 4.033 8 C -0.237 4.237 9 C 0.559 3.441 10 O -0.580 6.580 11 N -0.589 5.589 12 C 0.222 3.778 13 C -0.552 4.552 14 H 0.051 0.949 15 C 0.037 3.963 16 N -0.903 5.903 17 Si 0.951 3.049 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.271 1.271 21 C 0.125 3.875 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.063 0.937 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.207 0.793 29 H 0.162 0.838 30 H 0.189 0.811 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.272 0.728 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -2.010 -1.248 7.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.214 6.214 3 C 0.169 3.831 4 N -0.280 5.280 5 C 0.008 3.992 6 C -0.242 4.242 7 C -0.057 4.057 8 C -0.243 4.243 9 C 0.348 3.652 10 O -0.463 6.463 11 N -0.318 5.318 12 C 0.102 3.898 13 C -0.590 4.590 14 H 0.069 0.931 15 C -0.166 4.166 16 N -0.541 5.541 17 Si 0.776 3.224 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.197 1.197 21 C 0.002 3.998 22 C -0.125 4.125 23 C -0.195 4.195 24 C -0.191 4.191 25 H 0.082 0.918 26 H 0.134 0.866 27 H 0.080 0.920 28 H 0.224 0.776 29 H 0.180 0.820 30 H 0.205 0.795 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.449 -2.753 -1.102 8.955 hybrid contribution 1.473 0.652 0.534 1.697 sum -6.976 -2.101 -0.568 7.308 Atomic orbital electron populations 1.23118 0.75827 1.04481 1.02617 1.86393 1.24394 1.24118 1.86543 1.19875 0.87941 0.85602 0.89657 1.67495 1.39842 0.98750 1.21913 1.23310 0.93297 0.94051 0.88494 1.22293 0.94844 1.00321 1.06736 1.23500 1.05287 0.90468 0.86484 1.20045 0.91841 0.95633 1.16770 1.18110 0.81531 0.87265 0.78251 1.90649 1.72581 1.35983 1.47091 1.48034 1.16956 1.10378 1.56457 1.20073 0.94070 0.81233 0.94434 1.21578 1.24312 1.08343 1.04799 0.93082 1.25538 0.97702 0.96508 0.96858 1.70003 1.42467 1.17409 1.24203 0.85612 0.79080 0.78500 0.79186 1.20118 1.20358 1.19655 1.21489 0.96079 0.84351 0.97892 1.21420 0.99618 0.96548 0.94867 1.21797 1.01527 0.99193 0.96988 1.21693 1.00829 0.94298 1.02283 0.91813 0.86552 0.91959 0.77635 0.82036 0.79498 0.95543 0.92622 0.91819 0.90079 0.92103 0.93384 0.91416 0.94635 0.92344 0.92635 0.91120 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.38 113.37 1.18 2.09 16 2 O -0.31 -12.00 9.02 -69.23 -0.62 -12.63 16 3 C 0.35 13.86 7.48 85.13 0.64 14.50 16 4 N -0.56 -18.55 9.21 -307.99 -2.84 -21.39 16 5 C 0.16 4.59 11.17 84.71 0.95 5.53 16 6 C -0.22 -7.13 10.09 22.32 0.23 -6.90 16 7 C -0.03 -1.35 7.60 22.72 0.17 -1.18 16 8 C -0.24 -10.34 5.60 -19.91 -0.11 -10.45 16 9 C 0.56 26.45 7.30 86.69 0.63 27.08 16 10 O -0.58 -29.52 15.46 14.02 0.22 -29.31 16 11 N -0.59 -26.43 2.18 -829.94 -1.81 -28.24 16 12 C 0.22 10.48 3.95 85.63 0.34 10.82 16 13 C -0.55 -27.58 7.57 25.60 0.19 -27.39 16 14 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 15 C 0.04 1.80 5.33 84.65 0.45 2.26 16 16 N -0.90 -45.70 13.29 21.45 0.28 -45.41 16 17 Si 0.95 39.50 29.54 68.60 2.03 41.53 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 C 0.12 4.90 4.83 86.38 0.42 5.32 16 22 C -0.10 -3.52 3.07 -10.79 -0.03 -3.56 16 23 C -0.14 -4.46 8.38 71.98 0.60 -3.86 16 24 C -0.13 -3.45 9.19 71.99 0.66 -2.79 16 25 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 26 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.06 1.56 8.10 -2.39 -0.02 1.55 16 28 H 0.21 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.16 4.36 8.06 -2.92 -0.02 4.34 16 30 H 0.19 8.62 3.27 -2.91 -0.01 8.61 16 31 H 0.03 1.31 6.42 -2.39 -0.02 1.30 16 32 H 0.06 2.72 3.97 -2.48 -0.01 2.71 16 33 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 34 H 0.08 3.13 8.02 -2.39 -0.02 3.11 16 35 H 0.06 2.46 7.54 -2.39 -0.02 2.45 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.03 1.32 6.25 -2.39 -0.01 1.30 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -62.66 342.85 4.59 -58.07 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 1.02 Total: 25.91 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.31 Total: 11.46 kcal Atomic # 7 Polarization: -90.68 SS G_CDS: -4.36 Total: -95.04 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.41 Total: -41.94 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -62.66 4.59 -58.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061444574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.343 kcal (2) G-P(sol) polarization free energy of solvation -62.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds