Wall clock time and date at job start Tue Mar 31 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46656 * 2 1 4 4 C 1.53001 * 109.47390 * 60.00614 * 3 2 1 5 5 O 1.42903 * 109.47522 * 300.00049 * 3 2 1 6 6 C 1.53005 * 109.46981 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47185 * 185.00046 * 6 3 2 8 8 C 1.34778 * 119.99742 * 179.97438 * 7 6 3 9 9 O 1.21579 * 120.00038 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00121 * 180.02562 * 8 7 6 11 11 C 1.39237 * 120.00467 * 184.03028 * 10 8 7 12 12 C 1.39480 * 119.83240 * 324.49786 * 11 10 8 13 13 C 1.36371 * 120.17004 * 179.71825 * 12 11 10 14 14 C 1.40868 * 119.82709 * 0.54850 * 13 12 11 15 15 C 1.41163 * 120.16436 * 179.69908 * 14 13 12 16 16 H 1.07998 * 119.99836 * 214.80597 * 15 14 13 17 17 C 1.39890 * 119.99575 * 34.80923 * 15 14 13 18 18 N 1.30873 * 120.00738 * 355.55249 * 17 15 14 19 19 Si 1.86806 * 119.99577 * 175.55815 * 17 15 14 20 20 H 1.48497 * 109.47174 * 89.99902 * 19 17 15 21 21 H 1.48498 * 109.46920 * 210.00043 * 19 17 15 22 22 H 1.48503 * 109.47060 * 329.99857 * 19 17 15 23 23 C 1.40861 * 119.67409 * 359.72803 * 14 13 12 24 24 C 1.36381 * 119.82738 * 359.97438 * 23 14 13 25 25 H 1.08994 * 109.47389 * 59.99697 * 1 2 3 26 26 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47224 * 299.99435 * 1 2 3 28 28 H 1.08998 * 109.46532 * 240.00492 * 2 1 3 29 29 H 1.08994 * 109.47389 * 120.00303 * 2 1 3 30 30 H 1.09000 * 109.47260 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46536 * 299.99947 * 4 3 2 32 32 H 1.08998 * 109.46656 * 59.99549 * 4 3 2 33 33 H 0.96699 * 113.99915 * 300.00821 * 5 3 2 34 34 H 1.09001 * 109.47286 * 64.99922 * 6 3 2 35 35 H 1.08998 * 109.46854 * 305.00381 * 6 3 2 36 36 H 0.97000 * 120.00177 * 0.02562 * 7 6 3 37 37 H 0.97008 * 119.99597 * 4.30852 * 10 8 7 38 38 H 1.08006 * 119.91440 * 359.97438 * 12 11 10 39 39 H 1.08006 * 120.08717 * 180.27397 * 13 12 11 40 40 H 0.96997 * 120.00394 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.09265 * 179.97438 * 23 14 13 42 42 H 1.08001 * 119.91946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 8 1.5635 2.1162 -1.1668 6 6 3.5699 1.4426 -0.0006 7 7 4.0582 2.8186 0.1197 8 6 5.3833 3.0639 0.1412 9 8 6.1734 2.1433 0.0602 10 7 5.8327 4.3296 0.2525 11 6 7.1988 4.5915 0.1903 12 6 8.1050 3.6830 0.7368 13 6 9.4448 3.9298 0.6747 14 6 9.9120 5.1116 0.0668 15 6 11.2970 5.3773 0.0043 16 1 11.6563 6.3924 0.0865 17 6 12.2040 4.3257 -0.1644 18 7 11.7768 3.0886 -0.1768 19 14 14.0250 4.6871 -0.3716 20 1 14.6801 4.7092 0.9609 21 1 14.6466 3.6318 -1.2114 22 1 14.1959 6.0075 -1.0292 23 6 8.9904 6.0272 -0.4777 24 6 7.6539 5.7636 -0.4134 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8936 3.1913 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6499 2.1392 33 1 1.8488 1.7127 -1.9979 34 1 3.9329 1.0085 -0.9322 35 1 3.9336 0.8530 0.8409 36 1 3.4279 3.5530 0.1848 37 1 5.2045 5.0578 0.3799 38 1 7.7450 2.7796 1.2068 39 1 10.1455 3.2232 1.0944 40 1 12.4057 2.3595 -0.2941 41 1 9.3412 6.9355 -0.9449 42 1 6.9459 6.4648 -0.8301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066158531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:10 Heat of formation + Delta-G solvation = -65.988557 kcal Electronic energy + Delta-G solvation = -22851.943751 eV Core-core repulsion = 19410.500401 eV Total energy + Delta-G solvation = -3441.443350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.07288 -38.86719 -37.26790 -34.50347 -34.09049 -33.41019 -32.75346 -29.89274 -29.40010 -28.74895 -27.09758 -24.86994 -23.45806 -21.40562 -20.94663 -20.58666 -19.91604 -18.03416 -17.23802 -17.04412 -16.23671 -15.86149 -15.21357 -15.15251 -14.87825 -14.61410 -14.02273 -13.86870 -13.70105 -13.05400 -12.75836 -12.64917 -12.48079 -12.46545 -12.31959 -12.04001 -11.93705 -11.66114 -11.38797 -11.28386 -11.12442 -10.87758 -10.83590 -10.44532 -10.22896 -9.93013 -9.82884 -9.54123 -9.04811 -8.84326 -8.68672 -7.44834 -6.80006 -6.52819 -4.26507 2.74111 3.04830 3.11382 3.14344 3.16179 3.23280 3.76671 3.94173 4.03730 4.36670 4.47110 4.55055 4.73344 4.79390 4.96747 5.13591 5.26025 5.43638 5.55143 5.60434 5.62960 5.66781 5.69809 5.73177 5.93824 6.01213 6.19870 6.43509 6.62931 6.87828 6.91219 7.11426 7.21868 7.35191 7.36093 7.46057 7.71875 7.90707 8.09202 8.16009 8.36707 8.54493 8.74482 9.00066 9.01044 9.17675 10.38230 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.002748 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.954121 B =10185.669433 C =10617.896943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.120 3.880 4 C -0.141 4.141 5 O -0.556 6.556 6 C 0.117 3.883 7 N -0.746 5.746 8 C 0.693 3.307 9 O -0.576 6.576 10 N -0.669 5.669 11 C 0.026 3.974 12 C -0.094 4.094 13 C -0.143 4.143 14 C 0.097 3.903 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.809 5.809 19 Si 0.914 3.086 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.203 4.203 24 C -0.117 4.117 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.378 0.622 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.390 0.610 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.277 0.723 41 H 0.096 0.904 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 -3.704 1.096 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.079 3.921 4 C -0.198 4.198 5 O -0.362 6.362 6 C -0.009 4.009 7 N -0.405 5.405 8 C 0.394 3.606 9 O -0.453 6.453 10 N -0.315 5.315 11 C -0.067 4.067 12 C -0.115 4.115 13 C -0.163 4.163 14 C 0.095 3.905 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.146 4.146 18 N -0.437 5.437 19 Si 0.739 3.261 20 H -0.196 1.196 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.223 4.223 24 C -0.137 4.137 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.226 0.774 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.229 0.771 37 H 0.223 0.777 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.696 -4.436 1.429 19.268 hybrid contribution 0.500 0.328 -0.624 0.864 sum -18.196 -4.108 0.805 18.672 Atomic orbital electron populations 1.21729 0.94804 1.01438 1.02593 1.22126 0.97321 0.95871 1.03265 1.21488 0.91187 0.92228 0.87201 1.21793 1.02035 1.00889 0.95080 1.86532 1.76800 1.57165 1.15682 1.21787 0.92903 0.83481 1.02702 1.45022 1.05494 1.08762 1.81191 1.16043 0.82087 0.84002 0.78505 1.90934 1.54223 1.43323 1.56819 1.42097 1.07263 1.06352 1.75761 1.17088 0.80228 0.99160 1.10174 1.20669 0.93379 0.97992 0.99430 1.21308 0.93312 0.99949 1.01716 1.17719 0.93070 0.91243 0.88486 1.19450 0.90996 0.94251 1.44806 0.90731 1.25877 1.01075 0.94613 0.93069 1.69792 1.36400 0.99583 1.37891 0.86222 0.81883 0.79070 0.78894 1.19588 1.20366 1.18818 1.20671 0.92170 1.02166 1.07310 1.20056 0.95659 0.96724 1.01308 0.92041 0.92843 0.92380 0.91305 0.90662 0.91874 0.91322 0.90878 0.77434 0.91587 0.90987 0.77055 0.77670 0.87432 0.85204 0.91172 0.88578 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.41 37.16 0.35 -0.60 16 2 C -0.15 -1.02 5.17 -26.73 -0.14 -1.16 16 3 C 0.12 1.00 0.75 -90.62 -0.07 0.93 16 4 C -0.14 -1.10 8.26 37.16 0.31 -0.80 16 5 O -0.56 -4.81 12.25 -35.23 -0.43 -5.25 16 6 C 0.12 1.32 4.82 -4.04 -0.02 1.30 16 7 N -0.75 -9.82 5.19 -65.23 -0.34 -10.16 16 8 C 0.69 12.85 8.39 -86.92 -0.73 12.12 16 9 O -0.58 -13.42 13.78 5.30 0.07 -13.35 16 10 N -0.67 -12.20 5.31 -14.10 -0.07 -12.28 16 11 C 0.03 0.60 6.30 -83.57 -0.53 0.07 16 12 C -0.09 -2.42 8.61 -39.79 -0.34 -2.77 16 13 C -0.14 -3.93 8.62 -39.26 -0.34 -4.27 16 14 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 15 C -0.46 -12.62 9.02 -37.85 -0.34 -12.96 16 16 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 17 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 18 N -0.81 -22.06 10.60 55.54 0.59 -21.47 16 19 Si 0.91 19.48 29.56 -169.99 -5.03 14.46 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.20 -5.02 9.74 -39.26 -0.38 -5.40 16 24 C -0.12 -2.62 9.90 -39.79 -0.39 -3.01 16 25 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 31 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.38 2.36 9.04 45.56 0.41 2.77 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 4.26 7.01 -40.82 -0.29 3.98 16 37 H 0.39 5.55 8.83 -40.82 -0.36 5.19 16 38 H 0.11 2.80 6.25 -52.48 -0.33 2.47 16 39 H 0.13 3.73 6.13 -52.48 -0.32 3.41 16 40 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 41 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -32.58 343.47 -8.56 -41.14 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.22 Total: 14.50 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -3.31 Total: -12.77 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.17 Total: -43.91 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.36 Total: -18.59 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.58 -8.56 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066158531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.848 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds