Wall clock time and date at job start Tue Mar 31 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46656 * 2 1 4 4 C 1.53001 * 109.47390 * 60.00614 * 3 2 1 5 5 O 1.42903 * 109.47522 * 300.00049 * 3 2 1 6 6 C 1.53005 * 109.46981 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47185 * 185.00046 * 6 3 2 8 8 C 1.34778 * 119.99742 * 179.97438 * 7 6 3 9 9 O 1.21579 * 120.00038 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00121 * 180.02562 * 8 7 6 11 11 C 1.39237 * 120.00467 * 184.03028 * 10 8 7 12 12 C 1.39480 * 119.83240 * 324.49786 * 11 10 8 13 13 C 1.36371 * 120.17004 * 179.71825 * 12 11 10 14 14 C 1.40868 * 119.82709 * 0.54850 * 13 12 11 15 15 C 1.41163 * 120.16436 * 179.69908 * 14 13 12 16 16 H 1.07998 * 119.99836 * 214.80597 * 15 14 13 17 17 C 1.39890 * 119.99575 * 34.80923 * 15 14 13 18 18 N 1.30873 * 120.00738 * 355.55249 * 17 15 14 19 19 Si 1.86806 * 119.99577 * 175.55815 * 17 15 14 20 20 H 1.48497 * 109.47174 * 89.99902 * 19 17 15 21 21 H 1.48498 * 109.46920 * 210.00043 * 19 17 15 22 22 H 1.48503 * 109.47060 * 329.99857 * 19 17 15 23 23 C 1.40861 * 119.67409 * 359.72803 * 14 13 12 24 24 C 1.36381 * 119.82738 * 359.97438 * 23 14 13 25 25 H 1.08994 * 109.47389 * 59.99697 * 1 2 3 26 26 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47224 * 299.99435 * 1 2 3 28 28 H 1.08998 * 109.46532 * 240.00492 * 2 1 3 29 29 H 1.08994 * 109.47389 * 120.00303 * 2 1 3 30 30 H 1.09000 * 109.47260 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46536 * 299.99947 * 4 3 2 32 32 H 1.08998 * 109.46656 * 59.99549 * 4 3 2 33 33 H 0.96699 * 113.99915 * 300.00821 * 5 3 2 34 34 H 1.09001 * 109.47286 * 64.99922 * 6 3 2 35 35 H 1.08998 * 109.46854 * 305.00381 * 6 3 2 36 36 H 0.97000 * 120.00177 * 0.02562 * 7 6 3 37 37 H 0.97008 * 119.99597 * 4.30852 * 10 8 7 38 38 H 1.08006 * 119.91440 * 359.97438 * 12 11 10 39 39 H 1.08006 * 120.08717 * 180.27397 * 13 12 11 40 40 H 0.96997 * 120.00394 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.09265 * 179.97438 * 23 14 13 42 42 H 1.08001 * 119.91946 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5300 2.1638 1.2493 5 8 1.5635 2.1162 -1.1668 6 6 3.5699 1.4426 -0.0006 7 7 4.0582 2.8186 0.1197 8 6 5.3833 3.0639 0.1412 9 8 6.1734 2.1433 0.0602 10 7 5.8327 4.3296 0.2525 11 6 7.1988 4.5915 0.1903 12 6 8.1050 3.6830 0.7368 13 6 9.4448 3.9298 0.6747 14 6 9.9120 5.1116 0.0668 15 6 11.2970 5.3773 0.0043 16 1 11.6563 6.3924 0.0865 17 6 12.2040 4.3257 -0.1644 18 7 11.7768 3.0886 -0.1768 19 14 14.0250 4.6871 -0.3716 20 1 14.6801 4.7092 0.9609 21 1 14.6466 3.6318 -1.2114 22 1 14.1959 6.0075 -1.0292 23 6 8.9904 6.0272 -0.4777 24 6 7.6539 5.7636 -0.4134 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8936 3.1913 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6499 2.1392 33 1 1.8488 1.7127 -1.9979 34 1 3.9329 1.0085 -0.9322 35 1 3.9336 0.8530 0.8409 36 1 3.4279 3.5530 0.1848 37 1 5.2045 5.0578 0.3799 38 1 7.7450 2.7796 1.2068 39 1 10.1455 3.2232 1.0944 40 1 12.4057 2.3595 -0.2941 41 1 9.3412 6.9355 -0.9449 42 1 6.9459 6.4648 -0.8301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066158531.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:09 Heat of formation + Delta-G solvation = -89.497307 kcal Electronic energy + Delta-G solvation = -22852.963167 eV Core-core repulsion = 19410.500401 eV Total energy + Delta-G solvation = -3442.462766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48869 -39.88930 -38.97419 -36.19334 -35.39547 -34.61694 -34.03241 -31.42130 -31.01474 -30.14823 -28.06694 -26.58685 -24.39025 -23.19043 -22.69421 -21.64399 -21.15129 -19.45253 -19.19803 -18.40618 -17.28355 -17.03622 -16.79262 -16.12988 -16.04735 -15.90887 -15.70930 -15.08890 -14.88682 -14.61722 -14.46973 -13.94359 -13.70720 -13.38293 -13.34335 -13.28837 -13.04405 -12.89295 -12.83755 -12.63730 -12.59471 -12.29427 -11.83195 -11.79521 -11.69204 -11.46666 -11.33575 -10.98468 -10.84375 -10.53891 -10.09867 -9.42307 -8.68965 -8.46915 -6.29915 0.88267 1.15641 1.39567 1.47853 1.55182 1.75401 2.20302 2.26014 2.84987 3.24089 3.44601 3.60742 3.71887 3.86009 3.90812 4.34596 4.45678 4.50519 4.55270 4.61970 4.68794 4.79580 4.95311 5.00048 5.03128 5.08149 5.13653 5.14847 5.18518 5.35781 5.37385 5.43934 5.46702 5.49661 5.72154 5.81755 6.11397 6.17387 6.20517 6.40022 6.73958 6.79128 6.98856 7.05649 7.15489 7.66766 8.46087 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.002748 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.954121 B =10185.669433 C =10617.896943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C 0.132 3.868 4 C -0.144 4.144 5 O -0.563 6.563 6 C 0.113 3.887 7 N -0.721 5.721 8 C 0.690 3.310 9 O -0.627 6.627 10 N -0.659 5.659 11 C 0.041 3.959 12 C -0.109 4.109 13 C -0.167 4.167 14 C 0.063 3.937 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.021 3.979 18 N -0.849 5.849 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.208 4.208 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.388 0.612 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.411 0.589 37 H 0.415 0.585 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.281 0.719 41 H 0.113 0.887 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.030 -2.551 0.505 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 C 0.091 3.909 4 C -0.201 4.201 5 O -0.371 6.371 6 C -0.012 4.012 7 N -0.379 5.379 8 C 0.390 3.610 9 O -0.507 6.507 10 N -0.307 5.307 11 C -0.053 4.053 12 C -0.129 4.129 13 C -0.187 4.187 14 C 0.060 3.940 15 C -0.527 4.527 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.477 5.477 19 Si 0.812 3.188 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.228 4.228 24 C -0.130 4.130 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.238 0.762 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.248 0.752 37 H 0.252 0.748 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.581 -3.251 0.841 20.854 hybrid contribution 0.839 -0.064 -0.438 0.949 sum -19.742 -3.314 0.403 20.023 Atomic orbital electron populations 1.21705 0.94084 1.01949 1.02511 1.22119 0.97816 0.94815 1.03678 1.21383 0.88628 0.93318 0.87546 1.21845 1.02696 1.00673 0.94890 1.86515 1.76711 1.57599 1.16282 1.21998 0.95213 0.82055 1.01948 1.44827 1.03643 1.10263 1.79173 1.16258 0.83321 0.83293 0.78103 1.90916 1.56043 1.44818 1.58960 1.41859 1.05915 1.07319 1.75600 1.17125 0.81933 0.98283 1.07980 1.20665 0.93395 0.98500 1.00366 1.21172 0.93802 1.00392 1.03367 1.18064 0.94188 0.92019 0.89682 1.19745 0.91647 0.94916 1.46412 0.90231 1.26854 1.05988 0.94060 0.92125 1.69917 1.38160 1.00652 1.38965 0.85070 0.75480 0.79117 0.79150 1.18696 1.19820 1.17910 1.20949 0.92939 1.02121 1.06774 1.20411 0.95639 0.96930 1.00015 0.92412 0.92095 0.92127 0.90918 0.90375 0.92089 0.90379 0.90435 0.76231 0.92439 0.91779 0.75175 0.74846 0.88653 0.87763 0.90835 0.86862 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.41 71.98 0.68 -0.87 16 2 C -0.15 -1.75 5.17 30.59 0.16 -1.59 16 3 C 0.13 1.94 0.75 -10.79 -0.01 1.93 16 4 C -0.14 -1.92 8.26 71.98 0.59 -1.32 16 5 O -0.56 -8.42 12.25 -148.98 -1.83 -10.24 16 6 C 0.11 2.43 4.82 86.38 0.42 2.84 16 7 N -0.72 -17.72 5.19 -478.54 -2.49 -20.20 16 8 C 0.69 24.91 8.39 179.05 1.50 26.41 16 9 O -0.63 -29.61 13.78 -3.96 -0.05 -29.66 16 10 N -0.66 -22.75 5.31 -316.79 -1.68 -24.43 16 11 C 0.04 1.83 6.30 38.56 0.24 2.08 16 12 C -0.11 -5.76 8.61 22.13 0.19 -5.56 16 13 C -0.17 -9.64 8.62 22.48 0.19 -9.44 16 14 C 0.06 3.53 5.55 -21.28 -0.12 3.42 16 15 C -0.50 -27.68 9.02 23.39 0.21 -27.46 16 16 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 17 C 0.02 1.10 5.42 85.24 0.46 1.57 16 18 N -0.85 -48.22 10.60 21.82 0.23 -47.99 16 19 Si 0.99 40.46 29.56 68.60 2.03 42.48 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 C -0.21 -10.11 9.74 22.48 0.22 -9.90 16 24 C -0.11 -4.66 9.90 22.14 0.22 -4.45 16 25 H 0.06 0.67 7.68 -2.39 -0.02 0.65 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.83 6.57 -2.39 -0.02 0.81 16 31 H 0.08 0.92 6.43 -2.39 -0.02 0.91 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.39 4.02 9.04 -74.06 -0.67 3.35 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.41 7.72 7.01 -92.71 -0.65 7.07 16 37 H 0.41 10.37 8.83 -92.70 -0.82 9.56 16 38 H 0.10 5.20 6.25 -2.91 -0.02 5.18 16 39 H 0.10 6.43 6.13 -2.91 -0.02 6.42 16 40 H 0.28 14.65 8.30 -92.71 -0.77 13.88 16 41 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -73.30 343.47 0.10 -73.20 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -1.07 Total: 39.20 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.96 Total: -22.35 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -3.94 Total: -92.63 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.88 Total: -39.90 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -73.30 0.10 -73.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066158531.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.293 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds