Wall clock time and date at job start Tue Mar 31 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46891 * 2 1 4 4 C 1.50692 * 109.47351 * 120.00392 * 2 1 3 5 5 C 1.41266 * 126.70677 * 274.71080 * 4 2 1 6 6 C 1.36815 * 103.84795 * 179.89240 * 5 4 2 7 7 C 1.47516 * 126.94293 * 180.11434 * 6 5 4 8 8 O 1.21587 * 120.00208 * 354.13481 * 7 6 5 9 9 N 1.34777 * 119.99905 * 174.13342 * 7 6 5 10 10 C 1.46499 * 120.00050 * 4.33927 * 9 7 6 11 11 C 1.50705 * 109.47076 * 83.49967 * 10 9 7 12 12 H 1.08004 * 119.99839 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00140 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99738 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00139 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46850 * 59.99849 * 15 13 11 17 17 H 1.48500 * 109.47063 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47281 * 299.99928 * 15 13 11 19 19 C 1.46505 * 120.00092 * 184.33690 * 9 7 6 20 20 C 1.53001 * 109.46722 * 94.91022 * 19 9 7 21 21 C 1.52999 * 117.49813 * 243.74545 * 20 19 9 22 22 C 1.53006 * 117.49628 * 175.08831 * 20 19 9 23 23 O 1.34639 * 106.11540 * 0.36437 * 6 5 4 24 24 N 1.20890 * 111.46730 * 359.75490 * 23 6 5 25 25 H 1.08996 * 109.47421 * 59.99442 * 1 2 3 26 26 H 1.09001 * 109.47346 * 299.99075 * 1 2 3 27 27 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46826 * 240.00855 * 2 1 3 29 29 H 1.09001 * 109.46370 * 60.00328 * 3 2 1 30 30 H 1.08998 * 109.46787 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.46810 * 300.00569 * 3 2 1 32 32 H 1.08004 * 128.07461 * 359.97438 * 5 4 2 33 33 H 1.09000 * 109.47124 * 203.49852 * 10 9 7 34 34 H 1.08997 * 109.47492 * 323.49648 * 10 9 7 35 35 H 0.96994 * 119.99745 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47380 * 214.90799 * 19 9 7 37 37 H 1.09000 * 109.46873 * 334.90994 * 19 9 7 38 38 H 1.09001 * 115.55129 * 29.42083 * 20 19 9 39 39 H 1.09006 * 117.50204 * 0.02562 * 21 20 19 40 40 H 1.09003 * 117.49828 * 145.02439 * 21 20 19 41 41 H 1.08990 * 117.49752 * 214.97995 * 22 20 19 42 42 H 1.08997 * 117.49836 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.2262 -0.1466 2.5110 6 6 2.6852 -1.1930 3.2634 7 6 3.0496 -1.1646 4.6926 8 8 3.0557 -0.1100 5.2977 9 7 3.3757 -2.3078 5.3277 10 6 3.4609 -3.5636 4.5780 11 6 4.8165 -3.6697 3.9283 12 1 5.5419 -2.8805 4.0603 13 6 5.1308 -4.7744 3.1654 14 7 4.2477 -5.7357 3.0052 15 14 6.8109 -4.9057 2.3595 16 1 7.8648 -4.8802 3.4053 17 1 6.8973 -6.1787 1.5997 18 1 7.0058 -3.7622 1.4323 19 6 3.6450 -2.2946 6.7677 20 6 2.3694 -2.6626 7.5284 21 6 1.7636 -1.5999 8.4473 22 6 2.4723 -2.8169 9.0472 23 8 2.7426 -2.2524 2.4346 24 7 2.3778 -1.9619 1.3193 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6766 1.9563 0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 2.0513 0.8724 2.8235 33 1 3.3172 -4.4032 5.2581 34 1 2.6875 -3.5816 3.8102 35 1 4.4689 -6.5130 2.4688 36 1 4.4268 -3.0185 6.9978 37 1 3.9722 -1.2989 7.0670 38 1 1.6815 -3.3232 7.0008 39 1 2.2734 -0.6384 8.5097 40 1 0.6770 -1.5616 8.5247 41 1 1.8518 -3.5787 9.5187 42 1 3.4487 -2.6567 9.5043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072789010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:16 Heat of formation + Delta-G solvation = 44.341538 kcal Electronic energy + Delta-G solvation = -24013.001378 eV Core-core repulsion = 20576.342300 eV Total energy + Delta-G solvation = -3436.659078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.34607 -39.23127 -37.01724 -36.35465 -34.85783 -32.47470 -31.98849 -31.25903 -27.92981 -27.22696 -26.52823 -23.68167 -23.40077 -22.57087 -22.11739 -21.11618 -20.16718 -18.76587 -17.17251 -16.95447 -16.29576 -16.10609 -15.75406 -14.78209 -14.64251 -14.43126 -14.28545 -14.10616 -13.59812 -13.31728 -13.19691 -12.81505 -12.37816 -12.20679 -12.07218 -11.63685 -11.45841 -11.32554 -11.31426 -11.27369 -11.18362 -10.92574 -10.70770 -10.63319 -10.32807 -10.10675 -9.77339 -9.68991 -9.61075 -9.54066 -9.12198 -8.49134 -7.88425 -6.12294 -4.18596 1.47383 2.55640 3.28138 3.29625 3.33525 3.37350 3.63012 3.86545 4.09830 4.32892 4.39321 4.75653 5.01294 5.08362 5.14230 5.19121 5.23657 5.25561 5.28315 5.46322 5.56686 5.62026 5.69451 5.75529 5.78559 5.80603 5.89734 5.96594 6.05850 6.08227 6.14922 6.20430 6.26385 6.30799 6.37931 6.48347 6.68493 7.23780 7.39977 7.79309 8.06664 8.07066 8.54637 8.82992 8.87480 9.48021 10.95430 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.006947 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.110158 B = 4029.370151 C = 6242.613213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.014 4.014 3 C -0.144 4.144 4 C -0.003 4.003 5 C -0.175 4.175 6 C -0.059 4.059 7 C 0.600 3.400 8 O -0.549 6.549 9 N -0.576 5.576 10 C 0.230 3.770 11 C -0.537 4.537 12 H 0.058 0.942 13 C 0.073 3.927 14 N -0.885 5.885 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.277 1.277 19 C 0.148 3.852 20 C -0.163 4.163 21 C -0.177 4.177 22 C -0.177 4.177 23 O 0.174 5.826 24 N -0.354 5.354 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.172 0.828 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 9.146 1.308 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.160 4.160 5 C -0.198 4.198 6 C -0.125 4.125 7 C 0.386 3.614 8 O -0.429 6.429 9 N -0.305 5.305 10 C 0.111 3.889 11 C -0.576 4.576 12 H 0.077 0.923 13 C -0.131 4.131 14 N -0.523 5.523 15 Si 0.721 3.279 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.202 1.202 19 C 0.025 3.975 20 C -0.183 4.183 21 C -0.214 4.214 22 C -0.215 4.215 23 O 0.097 5.903 24 N -0.050 5.050 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.189 0.811 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.274 8.456 0.628 10.548 hybrid contribution 0.884 0.353 -0.191 0.971 sum -5.390 8.809 0.437 10.336 Atomic orbital electron populations 1.21814 0.93755 1.02364 1.02059 1.19436 0.95852 0.95214 0.92774 1.21834 1.01578 0.94535 1.02202 1.23422 1.04519 0.91059 0.97030 1.22569 1.04568 1.00803 0.91853 1.24178 1.05457 0.88209 0.94679 1.16640 0.77900 0.84363 0.82537 1.90741 1.56055 1.30538 1.65573 1.48173 1.64052 1.09832 1.08395 1.19749 0.98307 0.79262 0.91602 1.21294 0.99066 1.05447 1.31781 0.92335 1.24831 0.97125 0.95356 0.95756 1.69896 1.34326 1.08785 1.39255 0.86630 0.84209 0.77476 0.79608 1.20141 1.21072 1.20221 1.20977 0.94816 1.02560 0.79169 1.22786 1.00713 1.02713 0.92041 1.23007 0.99714 0.94164 1.04545 1.22911 1.02259 1.00732 0.95571 1.85559 1.59652 1.32438 1.12652 1.73771 1.13099 1.16614 1.01504 0.91926 0.92240 0.92350 0.89611 0.92044 0.92226 0.91911 0.81059 0.93750 0.93294 0.92492 0.89517 0.90082 0.87559 0.88662 0.89387 0.89030 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.18 37.16 0.34 -1.24 16 2 C -0.01 -0.18 3.38 -91.77 -0.31 -0.49 16 3 C -0.14 -1.54 8.81 37.16 0.33 -1.21 16 4 C 0.00 -0.06 6.20 -82.17 -0.51 -0.57 16 5 C -0.18 -3.09 10.13 -38.95 -0.39 -3.49 16 6 C -0.06 -1.22 6.87 -36.32 -0.25 -1.47 16 7 C 0.60 12.78 7.61 -12.48 -0.09 12.69 16 8 O -0.55 -11.97 16.41 5.29 0.09 -11.88 16 9 N -0.58 -12.05 2.48 -176.29 -0.44 -12.48 16 10 C 0.23 5.48 4.79 -5.19 -0.02 5.45 16 11 C -0.54 -14.10 8.54 -34.44 -0.29 -14.40 16 12 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 13 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 14 N -0.88 -24.70 13.29 55.43 0.74 -23.97 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.15 2.61 5.75 -4.04 -0.02 2.59 16 20 C -0.16 -2.52 6.01 -90.62 -0.54 -3.06 16 21 C -0.18 -2.39 10.18 -26.69 -0.27 -2.66 16 22 C -0.18 -2.21 10.26 -26.69 -0.27 -2.48 16 23 O 0.17 3.96 7.38 15.56 0.11 4.07 16 24 N -0.35 -7.51 12.04 33.52 0.40 -7.11 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.62 7.48 -51.93 -0.39 0.23 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.17 2.58 7.65 -52.48 -0.40 2.18 16 33 H 0.04 1.08 8.02 -51.93 -0.42 0.67 16 34 H 0.05 1.25 5.41 -51.93 -0.28 0.97 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 37 H 0.08 1.42 6.96 -51.93 -0.36 1.06 16 38 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -29.28 354.81 -7.65 -36.93 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.46 Total: 1.40 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.42 Total: -8.47 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.70 Total: -43.56 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.20 Total: -7.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.28 -7.65 -36.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072789010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.267 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds