Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46891 * 2 1 4 4 C 1.50692 * 109.47351 * 120.00392 * 2 1 3 5 5 C 1.41266 * 126.70677 * 274.71080 * 4 2 1 6 6 C 1.36815 * 103.84795 * 179.89240 * 5 4 2 7 7 C 1.47516 * 126.94293 * 180.11434 * 6 5 4 8 8 O 1.21587 * 120.00208 * 354.13481 * 7 6 5 9 9 N 1.34777 * 119.99905 * 174.13342 * 7 6 5 10 10 C 1.46499 * 120.00050 * 4.33927 * 9 7 6 11 11 C 1.50705 * 109.47076 * 83.49967 * 10 9 7 12 12 H 1.08004 * 119.99839 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00140 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99738 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00139 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46850 * 59.99849 * 15 13 11 17 17 H 1.48500 * 109.47063 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47281 * 299.99928 * 15 13 11 19 19 C 1.46505 * 120.00092 * 184.33690 * 9 7 6 20 20 C 1.53001 * 109.46722 * 94.91022 * 19 9 7 21 21 C 1.52999 * 117.49813 * 243.74545 * 20 19 9 22 22 C 1.53006 * 117.49628 * 175.08831 * 20 19 9 23 23 O 1.34639 * 106.11540 * 0.36437 * 6 5 4 24 24 N 1.20890 * 111.46730 * 359.75490 * 23 6 5 25 25 H 1.08996 * 109.47421 * 59.99442 * 1 2 3 26 26 H 1.09001 * 109.47346 * 299.99075 * 1 2 3 27 27 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46826 * 240.00855 * 2 1 3 29 29 H 1.09001 * 109.46370 * 60.00328 * 3 2 1 30 30 H 1.08998 * 109.46787 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.46810 * 300.00569 * 3 2 1 32 32 H 1.08004 * 128.07461 * 359.97438 * 5 4 2 33 33 H 1.09000 * 109.47124 * 203.49852 * 10 9 7 34 34 H 1.08997 * 109.47492 * 323.49648 * 10 9 7 35 35 H 0.96994 * 119.99745 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47380 * 214.90799 * 19 9 7 37 37 H 1.09000 * 109.46873 * 334.90994 * 19 9 7 38 38 H 1.09001 * 115.55129 * 29.42083 * 20 19 9 39 39 H 1.09006 * 117.50204 * 0.02562 * 21 20 19 40 40 H 1.09003 * 117.49828 * 145.02439 * 21 20 19 41 41 H 1.08990 * 117.49752 * 214.97995 * 22 20 19 42 42 H 1.08997 * 117.49836 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.2262 -0.1466 2.5110 6 6 2.6852 -1.1930 3.2634 7 6 3.0496 -1.1646 4.6926 8 8 3.0557 -0.1100 5.2977 9 7 3.3757 -2.3078 5.3277 10 6 3.4609 -3.5636 4.5780 11 6 4.8165 -3.6697 3.9283 12 1 5.5419 -2.8805 4.0603 13 6 5.1308 -4.7744 3.1654 14 7 4.2477 -5.7357 3.0052 15 14 6.8109 -4.9057 2.3595 16 1 7.8648 -4.8802 3.4053 17 1 6.8973 -6.1787 1.5997 18 1 7.0058 -3.7622 1.4323 19 6 3.6450 -2.2946 6.7677 20 6 2.3694 -2.6626 7.5284 21 6 1.7636 -1.5999 8.4473 22 6 2.4723 -2.8169 9.0472 23 8 2.7426 -2.2524 2.4346 24 7 2.3778 -1.9619 1.3193 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.6766 1.9563 0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 2.0513 0.8724 2.8235 33 1 3.3172 -4.4032 5.2581 34 1 2.6875 -3.5816 3.8102 35 1 4.4689 -6.5130 2.4688 36 1 4.4268 -3.0185 6.9978 37 1 3.9722 -1.2989 7.0670 38 1 1.6815 -3.3232 7.0008 39 1 2.2734 -0.6384 8.5097 40 1 0.6770 -1.5616 8.5247 41 1 1.8518 -3.5787 9.5187 42 1 3.4487 -2.6567 9.5043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072789010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = 29.183825 kcal Electronic energy + Delta-G solvation = -24013.658666 eV Core-core repulsion = 20576.342300 eV Total energy + Delta-G solvation = -3437.316366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.86602 -40.86169 -38.30159 -37.52818 -36.52193 -34.46517 -33.35877 -32.74226 -29.70804 -28.28163 -27.97866 -25.30702 -24.92418 -24.17684 -23.17169 -22.45690 -21.44910 -20.20718 -18.92760 -18.52665 -18.14206 -17.67108 -17.24045 -16.47256 -16.17566 -15.85957 -15.49833 -15.25835 -14.88945 -14.78005 -14.44732 -14.26853 -14.11567 -13.64868 -13.32676 -13.03026 -12.93125 -12.68908 -12.61800 -12.57950 -12.39102 -12.31682 -12.23178 -12.13270 -11.80926 -11.75363 -11.41128 -11.18403 -11.02026 -10.82808 -10.70898 -10.56042 -9.61005 -8.19343 -6.31413 -0.12459 1.13961 1.37887 1.39926 1.46373 1.73819 1.99138 2.27649 2.43897 2.94305 3.08056 3.13464 3.39909 3.81880 3.85685 4.02592 4.03302 4.13662 4.16369 4.17596 4.32250 4.39121 4.51090 4.65642 4.77153 4.80442 4.81852 4.85695 4.89873 4.95972 5.00089 5.03835 5.16149 5.24879 5.29018 5.30366 5.32536 5.37010 5.59079 5.74028 6.03610 6.30427 6.72491 6.95460 7.26454 7.38228 8.87497 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009726 B = 0.006947 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.110158 B = 4029.370151 C = 6242.613213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.017 4.017 3 C -0.140 4.140 4 C 0.015 3.985 5 C -0.157 4.157 6 C -0.088 4.088 7 C 0.597 3.403 8 O -0.557 6.557 9 N -0.578 5.578 10 C 0.248 3.752 11 C -0.541 4.541 12 H 0.048 0.952 13 C 0.030 3.970 14 N -0.913 5.913 15 Si 0.947 3.053 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.282 1.282 19 C 0.147 3.853 20 C -0.189 4.189 21 C -0.171 4.171 22 C -0.153 4.153 23 O 0.131 5.869 24 N -0.388 5.388 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.201 0.799 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.573 10.875 1.291 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.179 4.179 6 C -0.154 4.154 7 C 0.384 3.616 8 O -0.438 6.438 9 N -0.306 5.306 10 C 0.128 3.872 11 C -0.579 4.579 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.551 5.551 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.208 1.208 19 C 0.025 3.975 20 C -0.208 4.208 21 C -0.208 4.208 22 C -0.190 4.190 23 O 0.061 5.939 24 N -0.090 5.090 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.218 0.782 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.543 10.173 0.680 12.115 hybrid contribution 0.913 -0.097 -0.220 0.944 sum -5.630 10.077 0.459 11.552 Atomic orbital electron populations 1.21806 0.91968 1.01892 1.03883 1.19745 0.97244 0.96247 0.90441 1.21845 1.00980 0.92810 1.04120 1.24223 1.01744 0.89901 0.98419 1.22987 1.02386 1.01226 0.91293 1.24390 1.07109 0.89085 0.94786 1.16751 0.77734 0.84258 0.82899 1.90714 1.56707 1.30460 1.65939 1.48148 1.64025 1.08839 1.09617 1.19318 0.96799 0.80134 0.90993 1.21449 0.99690 1.04989 1.31776 0.93337 1.25497 1.00128 0.95182 0.96289 1.69988 1.35851 1.09263 1.40049 0.85785 0.80848 0.77275 0.78853 1.18993 1.20415 1.20769 1.21122 0.96195 1.02617 0.77604 1.22610 0.99903 1.04614 0.93713 1.23062 1.00483 0.94088 1.03177 1.23036 1.03011 1.00218 0.92726 1.85509 1.61441 1.33552 1.13375 1.73764 1.15129 1.18759 1.01355 0.88834 0.91703 0.93998 0.89743 0.91178 0.93197 0.89020 0.78187 0.94860 0.94930 0.92455 0.89734 0.89880 0.89073 0.88775 0.88267 0.87316 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.18 71.98 0.66 -2.07 16 2 C -0.02 -0.42 3.38 -11.54 -0.04 -0.46 16 3 C -0.14 -2.55 8.81 71.99 0.63 -1.92 16 4 C 0.01 0.51 6.20 43.55 0.27 0.78 16 5 C -0.16 -5.41 10.13 22.68 0.23 -5.18 16 6 C -0.09 -3.72 6.87 24.38 0.17 -3.55 16 7 C 0.60 25.93 7.61 86.69 0.66 26.59 16 8 O -0.56 -24.23 16.41 -3.99 -0.07 -24.29 16 9 N -0.58 -24.92 2.48 -829.93 -2.05 -26.97 16 10 C 0.25 12.31 4.79 85.63 0.41 12.72 16 11 C -0.54 -29.17 8.54 25.60 0.22 -28.95 16 12 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 13 C 0.03 1.65 5.46 84.66 0.46 2.11 16 14 N -0.91 -52.18 13.29 21.45 0.28 -51.90 16 15 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 C 0.15 5.25 5.75 86.38 0.50 5.74 16 20 C -0.19 -5.80 6.01 -10.79 -0.06 -5.86 16 21 C -0.17 -4.36 10.18 30.62 0.31 -4.05 16 22 C -0.15 -3.51 10.26 30.62 0.31 -3.20 16 23 O 0.13 6.21 7.38 65.85 0.49 6.69 16 24 N -0.39 -16.86 12.04 -48.86 -0.59 -17.45 16 25 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 1.17 7.48 -2.39 -0.02 1.15 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.20 5.56 7.65 -2.91 -0.02 5.54 16 33 H 0.03 1.71 8.02 -2.39 -0.02 1.69 16 34 H 0.03 1.76 5.41 -2.39 -0.01 1.75 16 35 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 37 H 0.08 2.91 6.96 -2.39 -0.02 2.89 16 38 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.09 2.43 8.03 -2.38 -0.02 2.41 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -64.47 354.81 5.83 -58.64 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.01 Total: 16.67 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 4.73 Total: -7.30 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -2.36 Total: -96.32 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.42 Total: -17.60 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.47 5.83 -58.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072789010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.829 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds