Wall clock time and date at job start Tue Mar 31 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47417 * 2 1 4 4 C 1.50695 * 109.47231 * 239.99925 * 2 1 3 5 5 C 1.41174 * 126.69026 * 84.71021 * 4 2 1 6 6 C 1.36996 * 103.83796 * 179.89177 * 5 4 2 7 7 C 1.47291 * 126.95861 * 180.02562 * 6 5 4 8 8 O 1.21649 * 120.00050 * 6.41287 * 7 6 5 9 9 N 1.34783 * 119.99910 * 186.40459 * 7 6 5 10 10 C 1.36681 * 120.00035 * 6.00418 * 9 7 6 11 11 H 1.07997 * 119.99928 * 236.04507 * 10 9 7 12 12 C 1.39158 * 119.99767 * 56.04723 * 10 9 7 13 13 N 1.31290 * 120.00150 * 9.20922 * 12 10 9 14 14 Si 1.86806 * 119.99800 * 189.20193 * 12 10 9 15 15 H 1.48497 * 109.46951 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46748 * 120.00471 * 14 12 10 17 17 H 1.48498 * 109.47051 * 240.00125 * 14 12 10 18 18 C 1.46496 * 119.99790 * 186.00206 * 9 7 6 19 19 C 1.54261 * 110.03394 * 237.90997 * 18 9 7 20 20 C 1.54965 * 104.16022 * 217.13667 * 19 18 9 21 21 C 1.54891 * 102.77726 * 37.88889 * 20 19 18 22 22 C 1.53881 * 110.03108 * 120.69272 * 18 9 7 23 23 O 1.34681 * 106.08141 * 0.36866 * 6 5 4 24 24 N 1.20880 * 111.45081 * 359.74842 * 23 6 5 25 25 H 1.09000 * 109.47092 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.46983 * 59.99648 * 1 2 3 27 27 H 1.08998 * 109.47653 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46987 * 119.99841 * 2 1 3 29 29 H 1.09000 * 109.47032 * 59.99911 * 3 2 1 30 30 H 1.08998 * 109.47200 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47332 * 300.00138 * 3 2 1 32 32 H 1.07996 * 128.08335 * 0.02562 * 5 4 2 33 33 H 0.97005 * 119.99607 * 184.84814 * 13 12 10 34 34 H 1.09007 * 110.02066 * 359.30124 * 18 9 7 35 35 H 1.08998 * 110.48695 * 335.78398 * 19 18 9 36 36 H 1.08997 * 110.48742 * 98.42674 * 19 18 9 37 37 H 1.09000 * 110.72390 * 279.57109 * 20 19 18 38 38 H 1.09005 * 110.92131 * 156.29435 * 20 19 18 39 39 H 1.08996 * 110.48454 * 203.40070 * 21 20 19 40 40 H 1.09001 * 110.59820 * 80.81752 * 21 20 19 41 41 H 1.09000 * 110.03048 * 238.56859 * 22 18 9 42 42 H 1.08993 * 110.03310 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.2151 -0.1492 -2.5129 6 6 2.6845 -1.1943 -3.2640 7 6 3.0461 -1.1668 -4.6915 8 8 3.0502 -0.1121 -5.2977 9 7 3.3725 -2.3102 -5.3262 10 6 3.2502 -3.5089 -4.6810 11 1 4.1036 -4.1650 -4.5942 12 6 2.0260 -3.8839 -4.1360 13 7 0.9489 -3.1788 -4.3939 14 14 1.9149 -5.3908 -3.0375 15 1 3.2599 -6.0060 -2.9039 16 1 1.4188 -4.9901 -1.6964 17 1 0.9780 -6.3736 -3.6387 18 6 3.8584 -2.2680 -6.7076 19 6 2.9483 -3.1222 -7.6142 20 6 3.9257 -3.7789 -8.6216 21 6 5.1628 -4.0924 -7.7440 22 6 5.2660 -2.8843 -6.7903 23 8 2.7412 -2.2540 -2.4346 24 7 2.3769 -1.9625 -1.3194 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.0303 0.8671 -2.8277 33 1 0.1101 -3.3979 -3.9588 34 1 3.8801 -1.2382 -7.0643 35 1 2.4345 -3.8848 -7.0290 36 1 2.2288 -2.4910 -8.1357 37 1 4.1841 -3.0818 -9.4187 38 1 3.5024 -4.6949 -9.0338 39 1 6.0583 -4.1693 -8.3606 40 1 5.0094 -5.0121 -7.1794 41 1 5.9706 -2.1538 -7.1879 42 1 5.5877 -3.2143 -5.8026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078207199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:20 Heat of formation + Delta-G solvation = 13.067046 kcal Electronic energy + Delta-G solvation = -24841.016251 eV Core-core repulsion = 21403.001009 eV Total energy + Delta-G solvation = -3438.015242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.87861 -38.98769 -36.72993 -36.08974 -34.23771 -31.61241 -31.49262 -30.64485 -28.00557 -27.21281 -26.99574 -24.96829 -23.30020 -22.78989 -20.85815 -20.04609 -19.44087 -19.24303 -17.33440 -16.59355 -15.85639 -15.68373 -15.20196 -14.66608 -14.62664 -14.18239 -13.98028 -13.64402 -13.33196 -13.01139 -12.85643 -12.66463 -12.47433 -12.02448 -11.61719 -11.34917 -11.28130 -11.15844 -11.01607 -10.99606 -10.91767 -10.67358 -10.53145 -10.40795 -10.37195 -10.30299 -10.01564 -9.71949 -9.30017 -9.04037 -8.85914 -8.53549 -7.39732 -6.42785 -4.33832 2.00367 2.91521 3.19099 3.29000 3.32281 3.99351 4.08860 4.36098 4.58773 4.72203 4.95128 5.05078 5.28253 5.31262 5.33913 5.47554 5.51651 5.66408 5.71950 5.89350 5.95044 6.01323 6.03652 6.07633 6.20040 6.21850 6.25490 6.27639 6.32961 6.38260 6.43971 6.48387 6.50866 6.52963 6.67555 6.79474 6.86129 7.03116 7.22748 7.41681 7.83967 8.51311 8.82387 9.11494 9.39722 9.78098 10.60484 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.006092 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.704004 B = 4595.216346 C = 5475.119458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.001 3.999 5 C -0.206 4.206 6 C 0.015 3.985 7 C 0.582 3.418 8 O -0.587 6.587 9 N -0.424 5.424 10 C -0.347 4.347 11 H 0.088 0.912 12 C 0.072 3.928 13 N -0.859 5.859 14 Si 0.908 3.092 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.284 1.284 18 C 0.134 3.866 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.128 4.128 23 O 0.156 5.844 24 N -0.384 5.384 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.163 0.837 33 H 0.272 0.728 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.423 2.231 2.173 3.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.156 4.156 5 C -0.229 4.229 6 C -0.051 4.051 7 C 0.370 3.630 8 O -0.472 6.472 9 N -0.142 5.142 10 C -0.475 4.475 11 H 0.105 0.895 12 C -0.138 4.138 13 N -0.493 5.493 14 Si 0.733 3.267 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.210 1.210 18 C 0.030 3.970 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.166 4.166 23 O 0.085 5.915 24 N -0.084 5.084 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.256 1.693 2.722 3.920 hybrid contribution -0.560 -0.118 0.174 0.598 sum 1.696 1.575 2.896 3.708 Atomic orbital electron populations 1.21799 0.94025 1.02223 1.01863 1.19374 0.95710 0.95094 0.92869 1.21810 1.01348 0.94751 1.02038 1.23186 1.04542 0.91106 0.96752 1.22438 1.07300 1.01231 0.91980 1.24077 1.01118 0.85744 0.94189 1.16995 0.79352 0.84095 0.82551 1.90664 1.59097 1.31562 1.65848 1.43152 1.56858 1.04942 1.09259 1.19212 0.95574 0.96758 1.35988 0.89454 1.25596 0.94511 0.97767 0.95884 1.69810 1.00120 1.40557 1.38808 0.86173 0.78872 0.81057 0.80573 1.18832 1.19505 1.21033 1.21689 0.92321 0.99273 0.83726 1.22579 0.97180 0.99870 0.96213 1.22453 0.96408 0.99717 0.97466 1.22254 0.97131 0.98722 0.97288 1.22414 0.96988 0.96960 1.00267 1.85364 1.60335 1.33210 1.12603 1.73628 1.15529 1.16398 1.02848 0.92238 0.92167 0.92553 0.90125 0.92214 0.92390 0.92017 0.81897 0.91809 0.90079 0.89131 0.92850 0.92457 0.92311 0.92860 0.91529 0.92666 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.18 37.16 0.34 -1.61 16 2 C -0.01 -0.17 3.38 -91.78 -0.31 -0.48 16 3 C -0.14 -1.77 8.81 37.16 0.33 -1.44 16 4 C 0.00 0.02 6.20 -82.18 -0.51 -0.49 16 5 C -0.21 -4.41 10.14 -38.92 -0.39 -4.80 16 6 C 0.02 0.38 5.80 -36.35 -0.21 0.17 16 7 C 0.58 14.96 6.94 -12.58 -0.09 14.87 16 8 O -0.59 -15.78 16.29 5.23 0.09 -15.70 16 9 N -0.42 -10.26 2.34 -107.81 -0.25 -10.52 16 10 C -0.35 -8.47 6.22 -15.05 -0.09 -8.57 16 11 H 0.09 2.09 7.19 -52.49 -0.38 1.71 16 12 C 0.07 1.79 3.03 -17.44 -0.05 1.74 16 13 N -0.86 -22.74 11.93 55.51 0.66 -22.07 16 14 Si 0.91 20.42 28.79 -169.99 -4.89 15.52 16 15 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.13 2.81 3.29 -66.81 -0.22 2.59 16 19 C -0.12 -2.36 6.42 -25.03 -0.16 -2.52 16 20 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 21 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 22 C -0.13 -2.27 6.27 -25.61 -0.16 -2.43 16 23 O 0.16 3.79 6.68 15.44 0.10 3.90 16 24 N -0.38 -8.74 12.04 33.53 0.40 -8.33 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.77 7.49 -51.93 -0.39 0.38 16 32 H 0.16 3.17 7.66 -52.49 -0.40 2.77 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.08 1.78 6.96 -51.93 -0.36 1.42 16 35 H 0.09 2.03 7.03 -51.93 -0.37 1.66 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.38 6.93 -51.93 -0.36 1.02 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -28.39 338.05 -7.13 -35.52 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.46 Total: 3.59 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.87 Total: -7.01 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.81 Total: -40.92 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.19 Total: -11.80 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.89 Total: 15.52 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.39 -7.13 -35.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.591 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds