Wall clock time and date at job start Tue Mar 31 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47417 * 2 1 4 4 C 1.50695 * 109.47231 * 239.99925 * 2 1 3 5 5 C 1.41174 * 126.69026 * 84.71021 * 4 2 1 6 6 C 1.36996 * 103.83796 * 179.89177 * 5 4 2 7 7 C 1.47291 * 126.95861 * 180.02562 * 6 5 4 8 8 O 1.21649 * 120.00050 * 6.41287 * 7 6 5 9 9 N 1.34783 * 119.99910 * 186.40459 * 7 6 5 10 10 C 1.36681 * 120.00035 * 6.00418 * 9 7 6 11 11 H 1.07997 * 119.99928 * 236.04507 * 10 9 7 12 12 C 1.39158 * 119.99767 * 56.04723 * 10 9 7 13 13 N 1.31290 * 120.00150 * 9.20922 * 12 10 9 14 14 Si 1.86806 * 119.99800 * 189.20193 * 12 10 9 15 15 H 1.48497 * 109.46951 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46748 * 120.00471 * 14 12 10 17 17 H 1.48498 * 109.47051 * 240.00125 * 14 12 10 18 18 C 1.46496 * 119.99790 * 186.00206 * 9 7 6 19 19 C 1.54261 * 110.03394 * 237.90997 * 18 9 7 20 20 C 1.54965 * 104.16022 * 217.13667 * 19 18 9 21 21 C 1.54891 * 102.77726 * 37.88889 * 20 19 18 22 22 C 1.53881 * 110.03108 * 120.69272 * 18 9 7 23 23 O 1.34681 * 106.08141 * 0.36866 * 6 5 4 24 24 N 1.20880 * 111.45081 * 359.74842 * 23 6 5 25 25 H 1.09000 * 109.47092 * 300.00052 * 1 2 3 26 26 H 1.09001 * 109.46983 * 59.99648 * 1 2 3 27 27 H 1.08998 * 109.47653 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46987 * 119.99841 * 2 1 3 29 29 H 1.09000 * 109.47032 * 59.99911 * 3 2 1 30 30 H 1.08998 * 109.47200 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47332 * 300.00138 * 3 2 1 32 32 H 1.07996 * 128.08335 * 0.02562 * 5 4 2 33 33 H 0.97005 * 119.99607 * 184.84814 * 13 12 10 34 34 H 1.09007 * 110.02066 * 359.30124 * 18 9 7 35 35 H 1.08998 * 110.48695 * 335.78398 * 19 18 9 36 36 H 1.08997 * 110.48742 * 98.42674 * 19 18 9 37 37 H 1.09000 * 110.72390 * 279.57109 * 20 19 18 38 38 H 1.09005 * 110.92131 * 156.29435 * 20 19 18 39 39 H 1.08996 * 110.48454 * 203.40070 * 21 20 19 40 40 H 1.09001 * 110.59820 * 80.81752 * 21 20 19 41 41 H 1.09000 * 110.03048 * 238.56859 * 22 18 9 42 42 H 1.08993 * 110.03310 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.2151 -0.1492 -2.5129 6 6 2.6845 -1.1943 -3.2640 7 6 3.0461 -1.1668 -4.6915 8 8 3.0502 -0.1121 -5.2977 9 7 3.3725 -2.3102 -5.3262 10 6 3.2502 -3.5089 -4.6810 11 1 4.1036 -4.1650 -4.5942 12 6 2.0260 -3.8839 -4.1360 13 7 0.9489 -3.1788 -4.3939 14 14 1.9149 -5.3908 -3.0375 15 1 3.2599 -6.0060 -2.9039 16 1 1.4188 -4.9901 -1.6964 17 1 0.9780 -6.3736 -3.6387 18 6 3.8584 -2.2680 -6.7076 19 6 2.9483 -3.1222 -7.6142 20 6 3.9257 -3.7789 -8.6216 21 6 5.1628 -4.0924 -7.7440 22 6 5.2660 -2.8843 -6.7903 23 8 2.7412 -2.2540 -2.4346 24 7 2.3769 -1.9625 -1.3194 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.0303 0.8671 -2.8277 33 1 0.1101 -3.3979 -3.9588 34 1 3.8801 -1.2382 -7.0643 35 1 2.4345 -3.8848 -7.0290 36 1 2.2288 -2.4910 -8.1357 37 1 4.1841 -3.0818 -9.4187 38 1 3.5024 -4.6949 -9.0338 39 1 6.0583 -4.1693 -8.3606 40 1 5.0094 -5.0121 -7.1794 41 1 5.9706 -2.1538 -7.1879 42 1 5.5877 -3.2143 -5.8026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:19 Heat of formation + Delta-G solvation = -1.954111 kcal Electronic energy + Delta-G solvation = -24841.667618 eV Core-core repulsion = 21403.001009 eV Total energy + Delta-G solvation = -3438.666608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.59574 -40.80522 -38.41510 -37.42811 -36.06059 -33.40256 -33.16931 -32.35899 -29.45751 -28.76343 -28.08038 -26.90452 -24.78109 -24.53458 -22.46500 -21.42968 -21.20940 -20.80388 -18.99629 -18.35177 -17.60322 -17.51780 -16.96877 -16.40920 -16.06797 -15.75345 -15.29446 -15.22772 -14.98599 -14.56833 -14.25055 -14.14386 -14.09488 -13.44888 -13.12081 -13.06510 -12.86927 -12.66937 -12.47584 -12.39667 -12.29945 -12.22390 -12.09562 -11.86194 -11.80278 -11.73352 -11.41423 -11.31380 -11.02963 -10.89189 -10.73933 -10.36840 -9.29880 -8.37827 -6.31386 0.15629 1.27775 1.36648 1.45291 1.50898 2.16209 2.24726 2.45654 2.91800 3.03121 3.21279 3.70130 3.87167 3.91895 4.12016 4.17022 4.20096 4.23171 4.37347 4.50592 4.60209 4.67110 4.74571 4.78460 4.79217 4.81542 4.89368 4.94741 4.95534 5.03633 5.08940 5.17867 5.23750 5.27464 5.30358 5.37130 5.38788 5.48118 5.51741 5.64623 5.97881 6.54777 6.88572 7.29057 7.51095 7.84958 8.65342 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.006092 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.704004 B = 4595.216346 C = 5475.119458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.015 4.015 3 C -0.137 4.137 4 C 0.019 3.981 5 C -0.202 4.202 6 C -0.014 4.014 7 C 0.565 3.435 8 O -0.613 6.613 9 N -0.426 5.426 10 C -0.344 4.344 11 H 0.092 0.908 12 C 0.047 3.953 13 N -0.887 5.887 14 Si 0.950 3.050 15 H -0.250 1.250 16 H -0.284 1.284 17 H -0.279 1.279 18 C 0.121 3.879 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.122 4.122 23 O 0.131 5.869 24 N -0.405 5.405 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.179 0.821 33 H 0.267 0.733 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 2.168 2.596 4.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.195 4.195 4 C -0.139 4.139 5 C -0.225 4.225 6 C -0.080 4.080 7 C 0.353 3.647 8 O -0.501 6.501 9 N -0.143 5.143 10 C -0.473 4.473 11 H 0.110 0.890 12 C -0.160 4.160 13 N -0.523 5.523 14 Si 0.775 3.225 15 H -0.174 1.174 16 H -0.210 1.210 17 H -0.205 1.205 18 C 0.018 3.982 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.146 4.146 22 C -0.161 4.161 23 O 0.065 5.935 24 N -0.110 5.110 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.196 0.804 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.958 1.586 3.097 4.567 hybrid contribution -0.783 -0.019 0.083 0.788 sum 2.175 1.567 3.180 4.159 Atomic orbital electron populations 1.21791 0.92798 1.01498 1.03435 1.19695 0.96626 0.96335 0.90722 1.21808 1.01160 0.92874 1.03634 1.23957 1.01963 0.90095 0.97836 1.22777 1.05999 1.01402 0.92311 1.24135 1.02849 0.86916 0.94142 1.17347 0.79740 0.84258 0.83344 1.90614 1.60673 1.32219 1.66628 1.43386 1.55951 1.04567 1.10400 1.19343 0.95623 0.96466 1.35820 0.89005 1.26068 0.94148 0.99344 0.96391 1.69902 1.00422 1.42072 1.39868 0.85512 0.79445 0.79014 0.78549 1.17353 1.20964 1.20498 1.21983 0.94749 0.99133 0.82356 1.22497 0.97614 0.98820 0.96710 1.22421 0.95085 1.00509 0.96796 1.22239 0.98447 0.97038 0.96918 1.22372 0.94849 0.98378 1.00454 1.85312 1.61579 1.33538 1.13060 1.73601 1.16947 1.17926 1.02477 0.88520 0.92765 0.94426 0.89143 0.88888 0.92730 0.92194 0.80354 0.92302 0.91625 0.92154 0.93835 0.90366 0.90611 0.89445 0.92087 0.90738 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.18 71.98 0.66 -2.84 16 2 C -0.01 -0.41 3.38 -11.54 -0.04 -0.45 16 3 C -0.14 -3.03 8.81 71.98 0.63 -2.40 16 4 C 0.02 0.77 6.20 43.52 0.27 1.03 16 5 C -0.20 -8.71 10.14 22.70 0.23 -8.48 16 6 C -0.01 -0.70 5.80 24.36 0.14 -0.56 16 7 C 0.56 30.05 6.94 86.62 0.60 30.65 16 8 O -0.61 -34.24 16.29 -4.19 -0.07 -34.31 16 9 N -0.43 -21.22 2.34 -613.25 -1.43 -22.65 16 10 C -0.34 -17.14 6.22 84.16 0.52 -16.62 16 11 H 0.09 4.43 7.19 -2.91 -0.02 4.41 16 12 C 0.05 2.38 3.03 84.99 0.26 2.64 16 13 N -0.89 -48.37 11.93 21.70 0.26 -48.11 16 14 Si 0.95 42.17 28.79 68.60 1.97 44.15 16 15 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.12 5.16 3.29 45.72 0.15 5.31 16 19 C -0.12 -4.67 6.42 31.69 0.20 -4.46 16 20 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 21 C -0.11 -3.07 6.83 31.67 0.22 -2.85 16 22 C -0.12 -4.21 6.27 31.32 0.20 -4.01 16 23 O 0.13 6.52 6.68 65.44 0.44 6.96 16 24 N -0.40 -18.58 12.04 -48.78 -0.59 -19.17 16 25 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.35 7.49 -2.39 -0.02 1.33 16 32 H 0.18 6.94 7.66 -2.91 -0.02 6.92 16 33 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 34 H 0.07 2.97 6.96 -2.38 -0.02 2.96 16 35 H 0.06 2.75 7.03 -2.39 -0.02 2.74 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 2.19 6.93 -2.39 -0.02 2.17 16 Total: -1.00 -63.69 338.05 5.85 -57.84 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 1.01 Total: 21.29 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.27 Total: -6.00 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -1.76 Total: -89.93 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.37 Total: -27.35 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.97 Total: 44.15 kcal Total: -63.69 5.85 -57.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.881 kcal (2) G-P(sol) polarization free energy of solvation -63.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds