Wall clock time and date at job start Tue Mar 31 2020 06:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 C 1.50698 * 109.47237 * 239.99800 * 2 1 3 5 5 C 1.39641 * 126.06162 * 84.71561 * 4 2 1 6 6 C 1.38486 * 105.35618 * 179.85037 * 5 4 2 7 7 C 1.47006 * 126.89263 * 180.10701 * 6 5 4 8 8 O 1.21553 * 120.00153 * 5.07369 * 7 6 5 9 9 O 1.34810 * 119.99702 * 185.07693 * 7 6 5 10 10 C 1.45207 * 116.99985 * 185.06345 * 9 7 6 11 11 C 1.53003 * 109.47449 * 176.47085 * 10 9 7 12 12 C 1.50702 * 115.54699 * 306.77837 * 11 10 9 13 13 H 1.07997 * 119.99748 * 144.24731 * 12 11 10 14 14 C 1.37871 * 120.00090 * 324.24549 * 12 11 10 15 15 N 1.31523 * 120.00035 * 350.83998 * 14 12 11 16 16 Si 1.86803 * 120.00124 * 170.83926 * 14 12 11 17 17 H 1.48491 * 109.47187 * 59.99857 * 16 14 12 18 18 H 1.48501 * 109.47352 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47013 * 299.99912 * 16 14 12 20 20 C 1.52997 * 117.49747 * 161.10657 * 11 10 9 21 21 C 1.52999 * 117.49594 * 92.44358 * 11 10 9 22 22 N 1.36652 * 106.21018 * 0.40108 * 6 5 4 23 23 C 1.46501 * 125.19200 * 179.76729 * 22 6 5 24 24 N 1.28440 * 109.60928 * 359.74042 * 22 6 5 25 25 H 1.08996 * 109.47032 * 60.00337 * 1 2 3 26 26 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47433 * 300.00331 * 1 2 3 28 28 H 1.08996 * 109.47032 * 119.99663 * 2 1 3 29 29 H 1.08996 * 109.47625 * 60.00093 * 3 2 1 30 30 H 1.09001 * 109.47040 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47025 * 299.99666 * 3 2 1 32 32 H 1.08007 * 127.31860 * 0.02562 * 5 4 2 33 33 H 1.09004 * 109.46628 * 296.47135 * 10 9 7 34 34 H 1.08998 * 109.47296 * 56.46992 * 10 9 7 35 35 H 0.96996 * 119.99578 * 185.03348 * 15 14 12 36 36 H 1.08996 * 117.50013 * 0.02562 * 20 11 10 37 37 H 1.09002 * 117.49345 * 145.02296 * 20 11 10 38 38 H 1.09005 * 117.49764 * 214.98002 * 21 11 10 39 39 H 1.08992 * 117.50403 * 359.97438 * 21 11 10 40 40 H 1.08993 * 109.47598 * 276.50571 * 23 22 6 41 41 H 1.08996 * 109.46887 * 36.50988 * 23 22 6 42 42 H 1.09003 * 109.46842 * 156.49912 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.2083 -0.1419 -2.4936 6 6 2.6859 -1.1664 -3.2936 7 6 3.0347 -1.0834 -4.7193 8 8 3.0007 -0.0118 -5.2920 9 8 3.3921 -2.1959 -5.3916 10 6 3.8319 -2.0237 -6.7647 11 6 4.2762 -3.3738 -7.3311 12 6 5.3016 -4.1159 -6.5133 13 1 5.2660 -5.1936 -6.4516 14 6 6.2852 -3.4192 -5.8439 15 7 6.4414 -2.1312 -6.0596 16 14 7.3959 -4.3045 -4.6306 17 1 8.1355 -5.3837 -5.3329 18 1 8.3625 -3.3389 -4.0487 19 1 6.5721 -4.8945 -3.5449 20 6 4.3526 -3.5107 -8.8531 21 6 3.2308 -4.2055 -8.0770 22 7 2.7617 -2.2716 -2.4935 23 6 3.2146 -3.5965 -2.9243 24 7 2.3756 -1.9711 -1.3058 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.0158 0.8804 -2.7841 33 1 3.0094 -1.6316 -7.3631 34 1 4.6677 -1.3248 -6.7936 35 1 7.1785 -1.6561 -5.6452 36 1 4.0867 -2.6389 -9.4508 37 1 5.1443 -4.1380 -9.2628 38 1 3.2850 -5.2896 -7.9765 39 1 2.2265 -3.7912 -8.1638 40 1 2.3857 -4.1307 -3.3885 41 1 4.0252 -3.4868 -3.6448 42 1 3.5702 -4.1577 -2.0602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080296435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:32 Heat of formation + Delta-G solvation = 7.629789 kcal Electronic energy + Delta-G solvation = -24061.630199 eV Core-core repulsion = 20623.379180 eV Total energy + Delta-G solvation = -3438.251019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.33666 -39.32718 -36.81176 -35.95561 -35.13035 -32.28347 -32.16092 -30.80824 -27.25626 -26.83854 -26.46206 -25.51797 -23.34743 -22.33788 -21.31968 -20.19355 -19.28705 -19.23070 -17.24831 -16.75657 -16.18491 -15.84373 -15.43606 -15.18240 -14.62965 -14.26621 -14.17728 -13.80393 -13.52076 -13.29084 -13.09174 -12.49491 -12.39272 -12.16020 -12.02409 -11.94097 -11.71944 -11.44043 -11.20247 -11.13134 -11.02972 -10.92687 -10.61655 -10.47184 -10.44078 -10.09910 -9.68125 -9.53971 -9.18408 -8.91164 -8.87013 -8.66550 -8.25219 -6.15954 -4.22274 1.47203 2.69350 2.73713 3.16156 3.25248 3.25971 3.30340 3.51488 4.23870 4.46174 4.83115 4.87521 5.08055 5.13566 5.21758 5.40636 5.42643 5.55624 5.57082 5.63963 5.71339 5.73834 5.81209 5.91653 5.96013 6.04264 6.10077 6.13926 6.21816 6.31322 6.36967 6.52422 6.56630 6.65871 6.69284 6.86468 6.96920 7.16879 7.28191 7.36875 7.78036 8.20220 8.24257 8.48120 8.74262 9.38121 10.84988 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.004940 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.461623 B = 5666.897590 C = 6290.998010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 C -0.144 4.144 4 C 0.020 3.980 5 C -0.158 4.158 6 C -0.011 4.011 7 C 0.532 3.468 8 O -0.508 6.508 9 O -0.324 6.324 10 C 0.116 3.884 11 C 0.048 3.952 12 C -0.484 4.484 13 H 0.063 0.937 14 C 0.075 3.925 15 N -0.881 5.881 16 Si 0.889 3.111 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.191 4.191 21 C -0.209 4.209 22 N -0.257 5.257 23 C 0.081 3.919 24 N -0.275 5.275 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.161 0.839 33 H 0.029 0.971 34 H 0.115 0.885 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 2.546 9.044 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 C -0.202 4.202 4 C -0.136 4.136 5 C -0.187 4.187 6 C -0.137 4.137 7 C 0.375 3.625 8 O -0.396 6.396 9 O -0.238 6.238 10 C 0.044 3.956 11 C 0.047 3.953 12 C -0.521 4.521 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.518 5.518 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.229 4.229 21 C -0.246 4.246 22 N -0.046 5.046 23 C -0.058 4.058 24 N -0.110 5.110 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.178 0.822 33 H 0.047 0.953 34 H 0.133 0.867 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.139 0.861 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.141 1.872 9.455 12.617 hybrid contribution 0.685 0.215 -0.207 0.747 sum -7.456 2.087 9.248 12.061 Atomic orbital electron populations 1.21815 0.94157 1.02072 1.01886 1.19362 0.95449 0.94887 0.92917 1.21833 1.01505 0.94800 1.02075 1.21839 1.05374 0.90288 0.96065 1.21879 1.05301 0.99513 0.91982 1.20913 1.12038 0.89302 0.91444 1.19613 0.74523 0.83320 0.85073 1.90811 1.50366 1.29899 1.68538 1.86536 1.74256 1.33155 1.29895 1.22895 0.97834 1.00070 0.74842 1.18873 0.95097 0.91823 0.89479 1.20395 1.10973 0.92665 1.28092 0.91872 1.24936 0.97106 0.94668 0.96148 1.69762 1.30332 1.08063 1.43686 0.86710 0.80492 0.79547 0.81668 1.20018 1.21143 1.19864 1.22967 1.00679 1.01693 0.97581 1.22977 0.93485 0.98676 1.09482 1.45819 1.43728 1.10000 1.05036 1.22501 1.02926 0.78161 1.02225 1.73044 1.16758 1.17670 1.03501 0.92342 0.92568 0.92218 0.89950 0.92135 0.92330 0.92071 0.82163 0.95270 0.86705 0.92458 0.91409 0.89725 0.90274 0.91262 0.89325 0.86104 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.17 37.16 0.34 -1.04 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -1.41 8.79 37.16 0.33 -1.09 16 4 C 0.02 0.31 6.12 -82.48 -0.51 -0.20 16 5 C -0.16 -2.64 10.00 -38.97 -0.39 -3.03 16 6 C -0.01 -0.21 6.96 -82.07 -0.57 -0.78 16 7 C 0.53 11.60 7.92 34.28 0.27 11.88 16 8 O -0.51 -11.91 16.72 -19.31 -0.32 -12.24 16 9 O -0.32 -7.32 7.55 -40.79 -0.31 -7.62 16 10 C 0.12 2.74 4.53 37.16 0.17 2.91 16 11 C 0.05 1.12 2.13 -155.66 -0.33 0.79 16 12 C -0.48 -12.18 8.76 -34.44 -0.30 -12.49 16 13 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 14 C 0.07 1.90 5.20 -17.82 -0.09 1.80 16 15 N -0.88 -23.44 10.74 55.43 0.60 -22.85 16 16 Si 0.89 19.80 29.55 -169.99 -5.02 14.78 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 20 C -0.19 -4.08 9.96 -26.69 -0.27 -4.34 16 21 C -0.21 -4.28 9.92 -26.69 -0.26 -4.54 16 22 N -0.26 -4.61 3.75 -63.90 -0.24 -4.85 16 23 C 0.08 1.32 10.54 59.85 0.63 1.95 16 24 N -0.28 -4.69 11.90 33.63 0.40 -4.29 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 32 H 0.16 2.40 7.52 -52.48 -0.39 2.01 16 33 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.12 3.02 6.03 -51.93 -0.31 2.71 16 35 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.12 2.29 6.69 -51.93 -0.35 1.95 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -28.24 354.45 -7.33 -35.56 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.48 Total: 4.72 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.29 Total: -8.57 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.76 Total: -31.98 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.63 Total: -19.86 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.24 -7.33 -35.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080296435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.193 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds