Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46854 * 2 1 4 4 C 1.50698 * 109.47237 * 239.99800 * 2 1 3 5 5 C 1.39641 * 126.06162 * 84.71561 * 4 2 1 6 6 C 1.38486 * 105.35618 * 179.85037 * 5 4 2 7 7 C 1.47006 * 126.89263 * 180.10701 * 6 5 4 8 8 O 1.21553 * 120.00153 * 5.07369 * 7 6 5 9 9 O 1.34810 * 119.99702 * 185.07693 * 7 6 5 10 10 C 1.45207 * 116.99985 * 185.06345 * 9 7 6 11 11 C 1.53003 * 109.47449 * 176.47085 * 10 9 7 12 12 C 1.50702 * 115.54699 * 306.77837 * 11 10 9 13 13 H 1.07997 * 119.99748 * 144.24731 * 12 11 10 14 14 C 1.37871 * 120.00090 * 324.24549 * 12 11 10 15 15 N 1.31523 * 120.00035 * 350.83998 * 14 12 11 16 16 Si 1.86803 * 120.00124 * 170.83926 * 14 12 11 17 17 H 1.48491 * 109.47187 * 59.99857 * 16 14 12 18 18 H 1.48501 * 109.47352 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47013 * 299.99912 * 16 14 12 20 20 C 1.52997 * 117.49747 * 161.10657 * 11 10 9 21 21 C 1.52999 * 117.49594 * 92.44358 * 11 10 9 22 22 N 1.36652 * 106.21018 * 0.40108 * 6 5 4 23 23 C 1.46501 * 125.19200 * 179.76729 * 22 6 5 24 24 N 1.28440 * 109.60928 * 359.74042 * 22 6 5 25 25 H 1.08996 * 109.47032 * 60.00337 * 1 2 3 26 26 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47433 * 300.00331 * 1 2 3 28 28 H 1.08996 * 109.47032 * 119.99663 * 2 1 3 29 29 H 1.08996 * 109.47625 * 60.00093 * 3 2 1 30 30 H 1.09001 * 109.47040 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47025 * 299.99666 * 3 2 1 32 32 H 1.08007 * 127.31860 * 0.02562 * 5 4 2 33 33 H 1.09004 * 109.46628 * 296.47135 * 10 9 7 34 34 H 1.08998 * 109.47296 * 56.46992 * 10 9 7 35 35 H 0.96996 * 119.99578 * 185.03348 * 15 14 12 36 36 H 1.08996 * 117.50013 * 0.02562 * 20 11 10 37 37 H 1.09002 * 117.49345 * 145.02296 * 20 11 10 38 38 H 1.09005 * 117.49764 * 214.98002 * 21 11 10 39 39 H 1.08992 * 117.50403 * 359.97438 * 21 11 10 40 40 H 1.08993 * 109.47598 * 276.50571 * 23 22 6 41 41 H 1.08996 * 109.46887 * 36.50988 * 23 22 6 42 42 H 1.09003 * 109.46842 * 156.49912 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.2083 -0.1419 -2.4936 6 6 2.6859 -1.1664 -3.2936 7 6 3.0347 -1.0834 -4.7193 8 8 3.0007 -0.0118 -5.2920 9 8 3.3921 -2.1959 -5.3916 10 6 3.8319 -2.0237 -6.7647 11 6 4.2762 -3.3738 -7.3311 12 6 5.3016 -4.1159 -6.5133 13 1 5.2660 -5.1936 -6.4516 14 6 6.2852 -3.4192 -5.8439 15 7 6.4414 -2.1312 -6.0596 16 14 7.3959 -4.3045 -4.6306 17 1 8.1355 -5.3837 -5.3329 18 1 8.3625 -3.3389 -4.0487 19 1 6.5721 -4.8945 -3.5449 20 6 4.3526 -3.5107 -8.8531 21 6 3.2308 -4.2055 -8.0770 22 7 2.7617 -2.2716 -2.4935 23 6 3.2146 -3.5965 -2.9243 24 7 2.3756 -1.9711 -1.3058 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.0158 0.8804 -2.7841 33 1 3.0094 -1.6316 -7.3631 34 1 4.6677 -1.3248 -6.7936 35 1 7.1785 -1.6561 -5.6452 36 1 4.0867 -2.6389 -9.4508 37 1 5.1443 -4.1380 -9.2628 38 1 3.2850 -5.2896 -7.9765 39 1 2.2265 -3.7912 -8.1638 40 1 2.3857 -4.1307 -3.3885 41 1 4.0252 -3.4868 -3.6448 42 1 3.5702 -4.1577 -2.0602 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080296435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = -5.730254 kcal Electronic energy + Delta-G solvation = -24062.209534 eV Core-core repulsion = 20623.379180 eV Total energy + Delta-G solvation = -3438.830354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.67889 -41.06258 -38.57898 -37.06625 -36.76750 -34.20217 -33.36234 -32.23525 -28.64995 -27.97867 -27.70552 -27.43746 -24.85575 -23.51594 -22.99508 -21.53680 -21.12547 -20.61307 -18.67338 -18.55010 -17.69831 -17.54761 -16.92129 -16.74803 -16.39503 -15.69928 -15.25934 -15.10104 -14.94914 -14.71210 -14.23494 -13.97604 -13.93549 -13.59376 -13.48851 -13.31064 -12.88363 -12.81816 -12.79407 -12.42709 -12.36622 -12.21793 -12.13367 -12.01197 -11.85763 -11.51723 -11.46431 -11.33798 -11.05129 -10.68545 -10.31632 -10.09257 -9.93401 -8.08637 -6.19871 -0.03896 1.34494 1.39073 1.42486 1.45487 1.48330 1.70289 1.90909 2.38715 3.00146 3.29033 3.49521 3.68084 3.85220 4.13154 4.19133 4.25255 4.29774 4.32012 4.37864 4.43733 4.52177 4.57527 4.68038 4.71926 4.78094 4.89830 4.92325 4.94506 5.05346 5.07347 5.17467 5.19550 5.38263 5.38838 5.45456 5.49187 5.51153 5.58659 5.66366 5.80657 6.32023 6.65984 6.80771 6.96853 7.42766 8.90160 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.004940 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.461623 B = 5666.897590 C = 6290.998010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.027 3.973 5 C -0.151 4.151 6 C -0.043 4.043 7 C 0.531 3.469 8 O -0.534 6.534 9 O -0.326 6.326 10 C 0.124 3.876 11 C 0.012 3.988 12 C -0.491 4.491 13 H 0.062 0.938 14 C 0.037 3.963 15 N -0.908 5.908 16 Si 0.936 3.064 17 H -0.271 1.271 18 H -0.295 1.295 19 H -0.258 1.258 20 C -0.187 4.187 21 C -0.184 4.184 22 N -0.262 5.262 23 C 0.082 3.918 24 N -0.280 5.280 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.175 0.825 33 H 0.036 0.964 34 H 0.084 0.916 35 H 0.258 0.742 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 2.176 10.626 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.129 4.129 5 C -0.179 4.179 6 C -0.168 4.168 7 C 0.375 3.625 8 O -0.424 6.424 9 O -0.240 6.240 10 C 0.051 3.949 11 C 0.012 3.988 12 C -0.528 4.528 13 H 0.080 0.920 14 C -0.163 4.163 15 N -0.546 5.546 16 Si 0.761 3.239 17 H -0.196 1.196 18 H -0.221 1.221 19 H -0.183 1.183 20 C -0.225 4.225 21 C -0.222 4.222 22 N -0.052 5.052 23 C -0.057 4.057 24 N -0.115 5.115 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.192 0.808 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.401 1.471 11.035 14.571 hybrid contribution 1.025 0.349 -0.675 1.276 sum -8.376 1.820 10.360 13.446 Atomic orbital electron populations 1.21797 0.92675 1.01917 1.03132 1.19590 0.96574 0.95391 0.91127 1.21841 1.00871 0.93870 1.03439 1.22527 1.03826 0.89624 0.96881 1.22199 1.03869 0.99691 0.92174 1.20848 1.14482 0.90976 0.90518 1.20031 0.73695 0.82758 0.86029 1.90779 1.51730 1.30527 1.69371 1.86552 1.74282 1.33607 1.29545 1.22654 0.96874 0.99715 0.75645 1.18982 0.96797 0.92448 0.90583 1.20619 1.11272 0.92690 1.28263 0.92024 1.25498 0.98355 0.95080 0.97384 1.69925 1.30688 1.09248 1.44771 0.85950 0.79035 0.78486 0.80383 1.19571 1.22078 1.18285 1.22978 1.01153 1.02223 0.96170 1.22992 0.93635 0.98870 1.06657 1.45950 1.44060 1.10077 1.05078 1.22515 1.02594 0.78010 1.02624 1.73067 1.16856 1.18604 1.02938 0.92566 0.93427 0.89552 0.89209 0.89492 0.93353 0.92063 0.80788 0.94593 0.89823 0.93199 0.90256 0.89911 0.89375 0.89554 0.87887 0.89046 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.17 71.98 0.66 -1.64 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -2.41 8.79 71.98 0.63 -1.78 16 4 C 0.03 0.78 6.12 43.04 0.26 1.05 16 5 C -0.15 -4.91 10.00 22.67 0.23 -4.69 16 6 C -0.04 -1.65 6.96 40.75 0.28 -1.37 16 7 C 0.53 23.67 7.92 70.12 0.56 24.22 16 8 O -0.53 -25.74 16.72 19.66 0.33 -25.41 16 9 O -0.33 -15.01 7.55 -57.22 -0.43 -15.45 16 10 C 0.12 5.98 4.53 71.98 0.33 6.30 16 11 C 0.01 0.58 2.13 -52.93 -0.11 0.46 16 12 C -0.49 -24.78 8.76 25.60 0.22 -24.55 16 13 H 0.06 3.05 7.83 -2.91 -0.02 3.03 16 14 C 0.04 1.90 5.20 84.65 0.44 2.34 16 15 N -0.91 -49.65 10.74 21.45 0.23 -49.42 16 16 Si 0.94 40.72 29.55 68.60 2.03 42.75 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 C -0.19 -7.82 9.96 30.62 0.30 -7.51 16 21 C -0.18 -7.24 9.92 30.62 0.30 -6.94 16 22 N -0.26 -9.28 3.75 -356.08 -1.34 -10.61 16 23 C 0.08 2.61 10.54 127.77 1.35 3.95 16 24 N -0.28 -9.17 11.90 -47.51 -0.57 -9.73 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.04 7.37 -2.39 -0.02 1.02 16 32 H 0.17 5.05 7.52 -2.91 -0.02 5.03 16 33 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.08 4.57 6.03 -2.39 -0.01 4.56 16 35 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 36 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 39 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.09 3.51 6.69 -2.39 -0.02 3.49 16 42 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -60.89 354.45 6.67 -54.22 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.00 Total: 23.98 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 5.42 Total: -10.32 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.67 Total: -69.77 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.10 Total: -40.86 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -60.89 6.67 -54.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080296435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.487 kcal (2) G-P(sol) polarization free energy of solvation -60.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds