Wall clock time and date at job start Tue Mar 31 2020 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.52997 * 109.47025 * 119.99772 * 2 1 3 5 5 C 1.52994 * 109.47472 * 175.00166 * 4 2 1 6 6 N 1.46496 * 109.47555 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00498 * 270.00125 * 6 5 4 8 8 C 1.50703 * 109.47364 * 270.00226 * 7 6 5 9 9 H 1.08002 * 119.99551 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00042 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00083 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99813 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47498 * 59.99613 * 12 10 8 14 14 H 1.48505 * 109.47006 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47019 * 299.98941 * 12 10 8 16 16 C 1.39680 * 119.99816 * 90.00096 * 6 5 4 17 17 C 1.38908 * 120.07347 * 180.02562 * 16 6 5 18 18 C 1.38106 * 119.92545 * 180.02562 * 17 16 6 19 19 C 1.38290 * 120.07244 * 0.02562 * 18 17 16 20 20 N 1.48007 * 119.92680 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99745 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00052 * 179.72343 * 20 19 18 23 23 C 1.38287 * 120.15030 * 0.24437 * 19 18 17 24 24 C 1.38105 * 120.07401 * 359.49987 * 23 19 18 25 25 H 1.08995 * 109.47399 * 300.00522 * 1 2 3 26 26 H 1.09002 * 109.46766 * 60.00915 * 1 2 3 27 27 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47399 * 239.99478 * 2 1 3 29 29 H 1.09003 * 109.47223 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47076 * 299.99424 * 3 2 1 31 31 H 1.08995 * 109.47458 * 59.99514 * 3 2 1 32 32 H 1.08996 * 109.47673 * 54.99842 * 4 2 1 33 33 H 1.09004 * 109.47219 * 295.00252 * 4 2 1 34 34 H 1.09000 * 109.47027 * 59.99956 * 5 4 2 35 35 H 1.08993 * 109.47367 * 300.00073 * 5 4 2 36 36 H 1.08998 * 109.47106 * 29.99953 * 7 6 5 37 37 H 1.09004 * 109.47284 * 149.99608 * 7 6 5 38 38 H 0.97003 * 119.99946 * 180.02562 * 11 10 8 39 39 H 1.08001 * 120.04093 * 0.02562 * 17 16 6 40 40 H 1.07995 * 119.96696 * 179.97438 * 18 17 16 41 41 H 1.08001 * 119.96326 * 179.74467 * 23 19 18 42 42 H 1.07999 * 120.04236 * 180.25667 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1881 6 7 4.0531 -1.5210 2.3846 7 6 4.4015 -0.7529 3.5823 8 6 5.8555 -0.3609 3.5225 9 1 6.4596 -0.6549 2.6770 10 6 6.4146 0.3723 4.5476 11 7 5.6789 0.7299 5.5775 12 14 8.2169 0.8575 4.4738 13 1 8.4569 1.6880 3.2664 14 1 8.5700 1.6363 5.6879 15 1 9.0565 -0.3656 4.4082 16 6 4.1866 -2.9114 2.3833 17 6 4.6490 -3.5673 3.5171 18 6 4.7803 -4.9421 3.5123 19 6 4.4525 -5.6656 2.3803 20 7 4.5949 -7.1388 2.3785 21 8 5.0010 -7.7125 3.3733 22 8 4.3018 -7.7778 1.3839 23 6 3.9971 -5.0153 1.2480 24 6 3.8585 -3.6412 1.2478 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9994 0.1676 1.1422 35 1 3.8532 -1.3939 0.3005 36 1 3.7850 0.1447 3.6304 37 1 4.2257 -1.3623 4.4688 38 1 6.0722 1.2460 6.2985 39 1 4.9056 -3.0029 4.4014 40 1 5.1401 -5.4527 4.3933 41 1 3.7459 -5.5829 0.3642 42 1 3.4989 -3.1342 0.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091503841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:07 Heat of formation + Delta-G solvation = 1.090420 kcal Electronic energy + Delta-G solvation = -23288.519885 eV Core-core repulsion = 19849.985298 eV Total energy + Delta-G solvation = -3438.534587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63095 -39.53611 -37.26044 -36.06484 -35.48782 -33.00615 -31.18495 -30.66849 -29.19735 -27.28317 -27.08281 -25.23808 -23.93366 -22.60842 -22.05393 -20.41654 -19.93639 -18.82815 -18.17802 -17.02678 -16.93898 -16.59441 -15.72218 -15.22477 -14.71896 -14.57149 -14.29927 -13.92621 -13.44329 -13.35237 -13.09393 -12.95801 -12.51241 -12.41837 -12.22954 -11.92400 -11.61508 -11.39618 -11.26855 -11.11144 -11.03508 -10.95090 -10.73442 -10.73035 -10.66829 -10.61033 -10.49909 -10.29544 -10.09320 -9.48212 -9.02019 -8.72493 -7.12355 -6.31761 -4.43140 0.47473 1.46959 1.98734 2.03534 3.14302 3.20340 3.22130 3.50447 3.84195 4.20679 4.76223 4.84328 4.85558 4.91555 4.94116 4.99809 5.20397 5.32941 5.41066 5.49738 5.56436 5.59939 5.64680 5.68815 5.79250 5.86985 5.95739 5.99786 6.05025 6.09949 6.15878 6.27323 6.35939 6.37461 6.41836 6.65091 6.73607 6.98127 6.98970 7.51358 7.72671 7.84386 7.86784 8.17297 8.63401 9.25389 10.72273 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.005843 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.071202 B = 4790.605723 C = 7522.626322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.134 4.134 5 C 0.113 3.887 6 N -0.579 5.579 7 C 0.241 3.759 8 C -0.543 4.543 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.285 3.715 17 C -0.187 4.187 18 C -0.009 4.009 19 C -0.134 4.134 20 N 0.053 4.947 21 O -0.196 6.196 22 O -0.201 6.201 23 C -0.005 4.005 24 C -0.220 4.220 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.268 0.732 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -1.312 -8.975 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.172 4.172 5 C -0.010 4.010 6 N -0.277 5.277 7 C 0.122 3.878 8 C -0.581 4.581 9 H 0.079 0.921 10 C -0.137 4.137 11 N -0.527 5.527 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.171 3.829 17 C -0.210 4.210 18 C -0.029 4.029 19 C -0.222 4.222 20 N 0.561 4.439 21 O -0.405 6.405 22 O -0.409 6.409 23 C -0.025 4.025 24 C -0.244 4.244 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.556 -0.243 -8.773 11.581 hybrid contribution 1.086 0.018 0.078 1.089 sum -6.470 -0.225 -8.695 10.840 Atomic orbital electron populations 1.21828 0.95336 1.01565 1.01607 1.21050 0.95618 0.96504 0.98040 1.21915 1.01575 0.95771 1.01593 1.22104 0.95972 1.00823 0.98324 1.21631 0.93426 0.98572 0.87413 1.47717 1.62279 1.02061 1.15628 1.19535 0.96139 0.91094 0.80986 1.21409 0.94926 1.35413 1.06386 0.92083 1.24935 0.98468 0.95309 0.94950 1.69900 1.36430 1.37457 1.08962 0.86539 0.84429 0.78842 0.77621 1.20104 1.20991 1.19948 1.18326 0.87088 0.84809 0.92724 1.20921 1.07459 0.92636 1.00034 1.20676 0.92712 0.93530 0.96016 1.20617 1.23087 0.78253 1.00286 1.43571 0.96816 1.04045 0.99457 1.94473 1.49079 1.72200 1.24776 1.94449 1.54548 1.67017 1.24888 1.20540 0.92066 0.94078 0.95864 1.20584 1.12216 0.92500 0.99082 0.92684 0.92890 0.92833 0.91331 0.92117 0.93047 0.92498 0.91870 0.91266 0.89426 0.91318 0.94255 0.94148 0.92241 0.82777 0.83954 0.84200 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.09 -0.93 2.92 -90.62 -0.26 -1.20 16 3 C -0.15 -1.55 8.95 37.16 0.33 -1.22 16 4 C -0.13 -1.62 5.01 -26.74 -0.13 -1.76 16 5 C 0.11 1.59 4.92 -4.05 -0.02 1.57 16 6 N -0.58 -10.08 2.59 -173.13 -0.45 -10.52 16 7 C 0.24 5.19 4.91 -5.19 -0.03 5.16 16 8 C -0.54 -13.19 9.39 -34.44 -0.32 -13.51 16 9 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -23.47 13.29 55.43 0.74 -22.73 16 12 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.29 4.77 6.55 -83.78 -0.55 4.23 16 17 C -0.19 -3.24 9.21 -39.38 -0.36 -3.60 16 18 C -0.01 -0.14 9.55 -39.61 -0.38 -0.52 16 19 C -0.13 -2.23 6.85 -79.92 -0.55 -2.78 16 20 N 0.05 0.95 4.45 33.98 0.15 1.10 16 21 O -0.20 -3.66 18.44 -29.46 -0.54 -4.20 16 22 O -0.20 -3.64 18.44 -29.46 -0.54 -4.18 16 23 C 0.00 -0.07 9.55 -39.61 -0.38 -0.45 16 24 C -0.22 -3.16 9.21 -39.38 -0.36 -3.52 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.66 6.56 -51.93 -0.34 0.32 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.32 6.49 -51.93 -0.34 0.98 16 35 H 0.07 0.85 6.20 -51.93 -0.32 0.53 16 36 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 38 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 39 H 0.15 2.87 6.14 -52.49 -0.32 2.55 16 40 H 0.14 2.14 7.60 -52.49 -0.40 1.75 16 41 H 0.14 1.78 7.60 -52.49 -0.40 1.38 16 42 H 0.14 1.64 6.14 -52.49 -0.32 1.32 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -26.42 351.99 -9.24 -35.67 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.11 Total: 1.73 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -2.77 Total: -16.99 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.44 Total: -32.15 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -1.09 Total: -8.38 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.42 -9.24 -35.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091503841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.756 kcal (2) G-P(sol) polarization free energy of solvation -26.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds