Wall clock time and date at job start Tue Mar 31 2020 07:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.52997 * 109.47025 * 119.99772 * 2 1 3 5 5 C 1.52994 * 109.47472 * 175.00166 * 4 2 1 6 6 N 1.46496 * 109.47555 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00498 * 270.00125 * 6 5 4 8 8 C 1.50703 * 109.47364 * 270.00226 * 7 6 5 9 9 H 1.08002 * 119.99551 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00042 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00083 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99813 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47498 * 59.99613 * 12 10 8 14 14 H 1.48505 * 109.47006 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47019 * 299.98941 * 12 10 8 16 16 C 1.39680 * 119.99816 * 90.00096 * 6 5 4 17 17 C 1.38908 * 120.07347 * 180.02562 * 16 6 5 18 18 C 1.38106 * 119.92545 * 180.02562 * 17 16 6 19 19 C 1.38290 * 120.07244 * 0.02562 * 18 17 16 20 20 N 1.48007 * 119.92680 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99745 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00052 * 179.72343 * 20 19 18 23 23 C 1.38287 * 120.15030 * 0.24437 * 19 18 17 24 24 C 1.38105 * 120.07401 * 359.49987 * 23 19 18 25 25 H 1.08995 * 109.47399 * 300.00522 * 1 2 3 26 26 H 1.09002 * 109.46766 * 60.00915 * 1 2 3 27 27 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47399 * 239.99478 * 2 1 3 29 29 H 1.09003 * 109.47223 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47076 * 299.99424 * 3 2 1 31 31 H 1.08995 * 109.47458 * 59.99514 * 3 2 1 32 32 H 1.08996 * 109.47673 * 54.99842 * 4 2 1 33 33 H 1.09004 * 109.47219 * 295.00252 * 4 2 1 34 34 H 1.09000 * 109.47027 * 59.99956 * 5 4 2 35 35 H 1.08993 * 109.47367 * 300.00073 * 5 4 2 36 36 H 1.08998 * 109.47106 * 29.99953 * 7 6 5 37 37 H 1.09004 * 109.47284 * 149.99608 * 7 6 5 38 38 H 0.97003 * 119.99946 * 180.02562 * 11 10 8 39 39 H 1.08001 * 120.04093 * 0.02562 * 17 16 6 40 40 H 1.07995 * 119.96696 * 179.97438 * 18 17 16 41 41 H 1.08001 * 119.96326 * 179.74467 * 23 19 18 42 42 H 1.07999 * 120.04236 * 180.25667 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1881 6 7 4.0531 -1.5210 2.3846 7 6 4.4015 -0.7529 3.5823 8 6 5.8555 -0.3609 3.5225 9 1 6.4596 -0.6549 2.6770 10 6 6.4146 0.3723 4.5476 11 7 5.6789 0.7299 5.5775 12 14 8.2169 0.8575 4.4738 13 1 8.4569 1.6880 3.2664 14 1 8.5700 1.6363 5.6879 15 1 9.0565 -0.3656 4.4082 16 6 4.1866 -2.9114 2.3833 17 6 4.6490 -3.5673 3.5171 18 6 4.7803 -4.9421 3.5123 19 6 4.4525 -5.6656 2.3803 20 7 4.5949 -7.1388 2.3785 21 8 5.0010 -7.7125 3.3733 22 8 4.3018 -7.7778 1.3839 23 6 3.9971 -5.0153 1.2480 24 6 3.8585 -3.6412 1.2478 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9994 0.1676 1.1422 35 1 3.8532 -1.3939 0.3005 36 1 3.7850 0.1447 3.6304 37 1 4.2257 -1.3623 4.4688 38 1 6.0722 1.2460 6.2985 39 1 4.9056 -3.0029 4.4014 40 1 5.1401 -5.4527 4.3933 41 1 3.7459 -5.5829 0.3642 42 1 3.4989 -3.1342 0.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091503841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:06 Heat of formation + Delta-G solvation = -8.871873 kcal Electronic energy + Delta-G solvation = -23288.951883 eV Core-core repulsion = 19849.985298 eV Total energy + Delta-G solvation = -3438.966585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.01670 -40.84231 -38.36578 -37.47298 -36.67753 -34.82362 -32.45792 -31.96966 -30.55346 -28.67982 -27.97805 -26.63631 -25.38250 -23.96991 -23.35611 -21.73182 -20.84207 -20.15256 -19.57126 -18.66941 -18.41432 -18.10808 -17.10195 -16.44349 -16.10792 -15.85182 -15.41141 -15.11505 -14.70959 -14.47969 -14.34048 -14.24169 -14.02633 -13.51967 -13.29227 -13.20543 -13.01494 -12.75484 -12.64039 -12.53290 -12.31312 -12.28975 -12.19580 -12.16248 -12.07048 -11.79432 -11.59504 -11.51388 -11.36416 -11.00733 -10.66919 -10.26902 -8.60511 -8.15690 -6.41741 -0.90183 0.22219 0.63387 0.68459 1.37607 1.39827 1.46365 2.12989 2.37507 2.56155 3.04231 3.57690 3.71983 3.89365 3.93118 4.03996 4.08076 4.12013 4.25911 4.39472 4.51430 4.68223 4.69062 4.76140 4.82052 4.84860 4.94651 4.97952 4.99763 5.05804 5.11622 5.13960 5.16415 5.24870 5.35483 5.36061 5.48724 5.54179 5.60588 5.64420 5.97092 6.18708 6.49533 6.72334 6.74911 7.30064 8.78199 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.005843 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.071202 B = 4790.605723 C = 7522.626322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.124 4.124 5 C 0.111 3.889 6 N -0.585 5.585 7 C 0.258 3.742 8 C -0.545 4.545 9 H 0.055 0.945 10 C 0.021 3.979 11 N -0.921 5.921 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.275 1.275 16 C 0.275 3.725 17 C -0.204 4.204 18 C -0.006 4.006 19 C -0.143 4.143 20 N 0.053 4.947 21 O -0.225 6.225 22 O -0.192 6.192 23 C 0.005 3.995 24 C -0.202 4.202 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.268 0.732 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.168 0.832 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 -1.686 -11.584 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.209 4.209 4 C -0.163 4.163 5 C -0.011 4.011 6 N -0.284 5.284 7 C 0.137 3.863 8 C -0.584 4.584 9 H 0.073 0.927 10 C -0.179 4.179 11 N -0.560 5.560 12 Si 0.779 3.221 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.200 1.200 16 C 0.161 3.839 17 C -0.227 4.227 18 C -0.027 4.027 19 C -0.231 4.231 20 N 0.558 4.442 21 O -0.427 6.427 22 O -0.403 6.403 23 C -0.016 4.016 24 C -0.225 4.225 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.186 0.814 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.907 -0.644 -11.357 13.854 hybrid contribution 1.156 0.112 0.834 1.430 sum -6.751 -0.532 -10.523 12.514 Atomic orbital electron populations 1.21814 0.94487 1.02024 1.01863 1.21037 0.96255 0.95983 0.97377 1.21920 1.01016 0.96235 1.01746 1.22012 0.94544 1.01065 0.98640 1.21829 0.94499 0.98000 0.86804 1.47548 1.63076 1.02337 1.15422 1.19021 0.94471 0.90454 0.82337 1.21666 0.96212 1.34674 1.05814 0.92661 1.25636 1.01883 0.95571 0.94816 1.69997 1.37892 1.38477 1.09643 0.85671 0.80295 0.78414 0.77721 1.19388 1.20848 1.19999 1.18545 0.87365 0.84529 0.93469 1.20778 1.08957 0.92995 0.99981 1.20684 0.92365 0.93124 0.96510 1.20809 1.23739 0.77502 1.01092 1.43744 0.96611 1.04540 0.99279 1.94481 1.50479 1.72646 1.25140 1.94424 1.53859 1.67367 1.24689 1.20860 0.90623 0.94173 0.95926 1.20831 1.10559 0.92192 0.98903 0.93582 0.91547 0.92272 0.89523 0.92975 0.91445 0.93823 0.91310 0.93561 0.90794 0.88692 0.96071 0.96010 0.92321 0.85011 0.83500 0.81419 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 2 C -0.09 -1.54 2.92 -10.79 -0.03 -1.58 16 3 C -0.15 -2.90 8.95 71.98 0.64 -2.25 16 4 C -0.12 -2.83 5.01 30.59 0.15 -2.67 16 5 C 0.11 2.95 4.92 86.38 0.42 3.38 16 6 N -0.58 -20.14 2.59 -701.65 -1.82 -21.96 16 7 C 0.26 11.44 4.91 85.63 0.42 11.86 16 8 C -0.55 -26.91 9.39 25.60 0.24 -26.67 16 9 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16 10 C 0.02 1.09 5.46 84.65 0.46 1.56 16 11 N -0.92 -49.78 13.29 21.45 0.28 -49.49 16 12 Si 0.95 40.88 29.54 68.60 2.03 42.90 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C 0.27 8.87 6.55 38.21 0.25 9.12 16 17 C -0.20 -7.10 9.21 22.40 0.21 -6.90 16 18 C -0.01 -0.20 9.55 22.25 0.21 0.01 16 19 C -0.14 -4.50 6.85 36.40 0.25 -4.25 16 20 N 0.05 1.82 4.45 -46.41 -0.21 1.61 16 21 O -0.23 -8.28 18.44 18.88 0.35 -7.93 16 22 O -0.19 -6.49 18.44 18.89 0.35 -6.14 16 23 C 0.00 0.12 9.55 22.25 0.21 0.33 16 24 C -0.20 -5.10 9.21 22.40 0.21 -4.89 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.07 6.56 -2.39 -0.02 1.06 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 34 H 0.07 2.19 6.49 -2.39 -0.02 2.17 16 35 H 0.10 2.02 6.20 -2.39 -0.01 2.01 16 36 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 37 H 0.02 1.05 6.20 -2.38 -0.01 1.03 16 38 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 39 H 0.13 5.18 6.14 -2.91 -0.02 5.17 16 40 H 0.15 4.50 7.60 -2.91 -0.02 4.47 16 41 H 0.17 3.46 7.60 -2.91 -0.02 3.44 16 42 H 0.17 3.18 6.14 -2.91 -0.02 3.17 16 Total: -1.00 -56.92 351.99 6.31 -50.61 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 1.01 Total: 15.00 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.31 Total: -24.60 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.74 Total: -69.84 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.70 Total: -14.08 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -56.92 6.31 -50.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091503841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.740 kcal (2) G-P(sol) polarization free energy of solvation -56.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds