Wall clock time and date at job start Tue Mar 31 2020 07:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47033 * 119.99818 * 2 1 3 5 5 C 1.53006 * 109.46687 * 65.55287 * 4 2 1 6 6 N 1.46507 * 109.46693 * 183.93710 * 5 4 2 7 7 C 1.46506 * 119.99769 * 274.58859 * 6 5 4 8 8 C 1.50699 * 109.47029 * 281.04058 * 7 6 5 9 9 H 1.08004 * 120.00201 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00059 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99962 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00170 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47266 * 89.99408 * 12 10 8 14 14 H 1.48495 * 109.47283 * 209.99581 * 12 10 8 15 15 H 1.48501 * 109.47165 * 329.99524 * 12 10 8 16 16 C 1.34778 * 120.00247 * 94.58925 * 6 5 4 17 17 O 1.21593 * 119.99645 * 6.86964 * 16 6 5 18 18 C 1.47522 * 119.99924 * 186.86457 * 16 6 5 19 19 C 1.39988 * 120.60087 * 328.39617 * 18 16 6 20 20 C 1.38326 * 118.35305 * 180.22017 * 19 18 16 21 21 C 1.38364 * 119.45754 * 359.50769 * 20 19 18 22 22 N 1.31886 * 121.18260 * 0.25428 * 21 20 19 23 23 C 1.32236 * 121.79927 * 0.02562 * 22 21 20 24 24 O 1.35429 * 119.79949 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.47808 * 303.89066 * 1 2 3 26 26 H 1.09011 * 109.47527 * 63.89105 * 1 2 3 27 27 H 1.09006 * 109.47370 * 183.88791 * 1 2 3 28 28 H 1.08994 * 109.47035 * 240.00091 * 2 1 3 29 29 H 1.08998 * 109.46872 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47216 * 300.00077 * 3 2 1 31 31 H 1.09007 * 109.47226 * 59.99957 * 3 2 1 32 32 H 1.09003 * 109.47492 * 305.55691 * 4 2 1 33 33 H 1.08999 * 109.47159 * 185.54982 * 4 2 1 34 34 H 1.08999 * 109.47202 * 63.93937 * 5 4 2 35 35 H 1.09000 * 109.47153 * 303.93413 * 5 4 2 36 36 H 1.08998 * 109.46884 * 41.03967 * 7 6 5 37 37 H 1.08996 * 109.47014 * 161.04018 * 7 6 5 38 38 H 0.97001 * 120.00004 * 180.02562 * 11 10 8 39 39 H 1.08005 * 120.82468 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.27573 * 179.78613 * 20 19 18 41 41 H 1.07993 * 119.40739 * 180.23200 * 21 20 19 42 42 H 0.96705 * 113.99654 * 89.99664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6470 -2.1984 1.1813 6 7 2.0525 -2.8689 2.4193 7 6 3.4143 -3.3912 2.5572 8 6 3.5246 -4.7052 1.8277 9 1 2.6661 -5.1110 1.3131 10 6 4.7213 -5.3900 1.8180 11 7 5.7666 -4.8961 2.4450 12 14 4.8582 -7.0184 0.9131 13 1 5.2734 -6.7712 -0.4910 14 1 5.8689 -7.8744 1.5847 15 1 3.5412 -7.7044 0.9264 16 6 1.1728 -3.0052 3.4312 17 8 0.0102 -2.6857 3.2732 18 6 1.6203 -3.5422 4.7303 19 6 2.6553 -4.4825 4.7943 20 6 3.0346 -4.9584 6.0365 21 6 2.3942 -4.4889 7.1696 22 7 1.4244 -3.5989 7.0866 23 6 1.0197 -3.1158 5.9242 24 8 0.0203 -2.2026 5.8861 25 1 -0.3635 0.5730 0.8531 26 1 -0.3634 0.4523 -0.9229 27 1 -0.3634 -1.0253 0.0697 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.5976 -0.2680 2.1365 33 1 3.1254 -0.6359 1.3003 34 1 2.1455 -2.6683 0.3335 35 1 0.5670 -2.2819 1.0599 36 1 4.1214 -2.6790 2.1318 37 1 3.6406 -3.5415 3.6128 38 1 6.6086 -5.3777 2.4378 39 1 3.1430 -4.8308 3.8958 40 1 3.8272 -5.6870 6.1217 41 1 2.6935 -4.8582 8.1393 42 1 0.3232 -1.2857 5.9395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:32 Heat of formation + Delta-G solvation = -34.976733 kcal Electronic energy + Delta-G solvation = -24158.956638 eV Core-core repulsion = 20718.858062 eV Total energy + Delta-G solvation = -3440.098577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45806 -38.63326 -36.82527 -36.45623 -34.98786 -32.78707 -32.24905 -30.13886 -28.94524 -27.32072 -27.02042 -24.38844 -23.56418 -22.72679 -22.26264 -19.80184 -19.15430 -18.27810 -16.82536 -16.67999 -16.34835 -15.79032 -15.27939 -14.98684 -14.66790 -14.38711 -14.30481 -13.52244 -13.40801 -13.30159 -13.13570 -12.72579 -12.49945 -12.30755 -12.07597 -11.93974 -11.63948 -11.36675 -11.16061 -11.13360 -11.01636 -10.73629 -10.55138 -10.52044 -10.32145 -10.08052 -9.91241 -9.49861 -9.27250 -8.87869 -8.63495 -8.51647 -7.77044 -6.38478 -4.48726 1.09286 1.59214 3.11937 3.20280 3.23641 3.41014 3.70317 3.94339 4.17561 4.23738 4.91664 4.98176 5.05128 5.11199 5.13285 5.26739 5.38449 5.51795 5.62440 5.71591 5.82111 5.83766 5.85913 5.89121 5.98328 6.01196 6.11138 6.25124 6.35188 6.38425 6.52370 6.59840 6.61716 6.65599 6.70312 6.95964 7.04887 7.41692 7.57301 7.80559 7.83109 8.15664 8.25231 8.61639 8.92100 9.20721 10.65804 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.007585 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.500519 B = 3690.544209 C = 6108.227264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.209 3.791 8 C -0.546 4.546 9 H 0.066 0.934 10 C 0.069 3.931 11 N -0.882 5.882 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.559 3.441 17 O -0.549 6.549 18 C -0.199 4.199 19 C -0.034 4.034 20 C -0.197 4.197 21 C 0.131 3.869 22 N -0.522 5.522 23 C 0.349 3.651 24 O -0.465 6.465 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.269 0.731 39 H 0.206 0.794 40 H 0.140 0.860 41 H 0.157 0.843 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 5.904 1.297 6.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.005 4.005 6 N -0.319 5.319 7 C 0.089 3.911 8 C -0.584 4.584 9 H 0.084 0.916 10 C -0.136 4.136 11 N -0.519 5.519 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.195 1.195 16 C 0.347 3.653 17 O -0.429 6.429 18 C -0.205 4.205 19 C -0.059 4.059 20 C -0.217 4.217 21 C -0.026 4.026 22 N -0.241 5.241 23 C 0.169 3.831 24 O -0.271 6.271 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.222 0.778 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.621 5.893 1.918 7.177 hybrid contribution 1.093 -0.798 -1.134 1.765 sum -2.528 5.095 0.784 5.741 Atomic orbital electron populations 1.21893 0.95300 1.02298 1.01030 1.21040 0.95850 0.95883 0.98502 1.21822 1.00901 0.96190 1.01272 1.21982 1.01156 0.95840 0.97550 1.21402 1.00963 0.91125 0.87051 1.48056 1.14441 1.55503 1.13887 1.20249 0.77074 0.94408 0.99344 1.21492 0.97253 1.05309 1.34377 0.91566 1.24998 0.95264 0.98321 0.95036 1.69927 1.01673 1.38969 1.41297 0.86494 0.78311 0.82857 0.79993 1.20276 1.20801 1.19513 1.17869 0.85315 0.78554 0.83582 1.90724 1.17281 1.52005 1.82855 1.21127 1.00214 1.04315 0.94846 1.23617 0.90277 0.89994 1.01978 1.22185 1.03255 1.03080 0.93165 1.22623 0.89874 0.91172 0.98926 1.67193 1.14699 1.13959 1.28283 1.19129 0.85974 0.91079 0.86875 1.84770 1.29308 1.17967 1.95037 0.92851 0.93296 0.92060 0.91136 0.92771 0.93047 0.92943 0.92260 0.91738 0.90370 0.90298 0.94804 0.92059 0.92101 0.77755 0.84170 0.82606 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.05 37.16 0.34 -1.52 16 2 C -0.09 -1.21 2.91 -90.62 -0.26 -1.47 16 3 C -0.14 -1.63 9.19 37.16 0.34 -1.28 16 4 C -0.13 -1.97 5.00 -26.73 -0.13 -2.10 16 5 C 0.12 2.14 5.34 -4.04 -0.02 2.12 16 6 N -0.59 -12.19 2.48 -176.28 -0.44 -12.62 16 7 C 0.21 4.66 4.68 -5.19 -0.02 4.63 16 8 C -0.55 -13.15 7.57 -34.44 -0.26 -13.41 16 9 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 10 C 0.07 1.66 5.39 -17.82 -0.10 1.57 16 11 N -0.88 -22.09 13.29 55.43 0.74 -21.36 16 12 Si 0.90 19.17 29.54 -169.99 -5.02 14.15 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 C 0.56 12.05 7.33 -12.48 -0.09 11.95 16 17 O -0.55 -12.77 15.33 -13.25 -0.20 -12.97 16 18 C -0.20 -4.02 5.58 -104.69 -0.58 -4.61 16 19 C -0.03 -0.67 7.58 -38.89 -0.29 -0.96 16 20 C -0.20 -3.22 10.09 -39.50 -0.40 -3.62 16 21 C 0.13 2.00 11.17 -17.48 -0.20 1.81 16 22 N -0.52 -9.30 10.37 -12.98 -0.13 -9.44 16 23 C 0.35 6.67 7.74 -16.61 -0.13 6.54 16 24 O -0.46 -8.37 12.13 -36.51 -0.44 -8.81 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.83 6.33 -51.93 -0.33 0.50 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 35 H 0.08 1.46 5.41 -51.93 -0.28 1.18 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.40 3.87 -52.19 -0.20 1.19 16 38 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 39 H 0.21 4.46 3.55 -52.48 -0.19 4.28 16 40 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 41 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.39 5.14 9.06 45.56 0.41 5.55 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -28.72 344.85 -7.32 -36.04 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.20 Total: 10.16 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.81 Total: -0.35 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.17 Total: -43.41 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.65 Total: -21.78 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.72 -7.32 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.061 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds