Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 C 1.52997 * 109.47033 * 119.99818 * 2 1 3 5 5 C 1.53006 * 109.46687 * 65.55287 * 4 2 1 6 6 N 1.46507 * 109.46693 * 183.93710 * 5 4 2 7 7 C 1.46506 * 119.99769 * 274.58859 * 6 5 4 8 8 C 1.50699 * 109.47029 * 281.04058 * 7 6 5 9 9 H 1.08004 * 120.00201 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00059 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99962 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00170 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47266 * 89.99408 * 12 10 8 14 14 H 1.48495 * 109.47283 * 209.99581 * 12 10 8 15 15 H 1.48501 * 109.47165 * 329.99524 * 12 10 8 16 16 C 1.34778 * 120.00247 * 94.58925 * 6 5 4 17 17 O 1.21593 * 119.99645 * 6.86964 * 16 6 5 18 18 C 1.47522 * 119.99924 * 186.86457 * 16 6 5 19 19 C 1.39988 * 120.60087 * 328.39617 * 18 16 6 20 20 C 1.38326 * 118.35305 * 180.22017 * 19 18 16 21 21 C 1.38364 * 119.45754 * 359.50769 * 20 19 18 22 22 N 1.31886 * 121.18260 * 0.25428 * 21 20 19 23 23 C 1.32236 * 121.79927 * 0.02562 * 22 21 20 24 24 O 1.35429 * 119.79949 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.47808 * 303.89066 * 1 2 3 26 26 H 1.09011 * 109.47527 * 63.89105 * 1 2 3 27 27 H 1.09006 * 109.47370 * 183.88791 * 1 2 3 28 28 H 1.08994 * 109.47035 * 240.00091 * 2 1 3 29 29 H 1.08998 * 109.46872 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47216 * 300.00077 * 3 2 1 31 31 H 1.09007 * 109.47226 * 59.99957 * 3 2 1 32 32 H 1.09003 * 109.47492 * 305.55691 * 4 2 1 33 33 H 1.08999 * 109.47159 * 185.54982 * 4 2 1 34 34 H 1.08999 * 109.47202 * 63.93937 * 5 4 2 35 35 H 1.09000 * 109.47153 * 303.93413 * 5 4 2 36 36 H 1.08998 * 109.46884 * 41.03967 * 7 6 5 37 37 H 1.08996 * 109.47014 * 161.04018 * 7 6 5 38 38 H 0.97001 * 120.00004 * 180.02562 * 11 10 8 39 39 H 1.08005 * 120.82468 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.27573 * 179.78613 * 20 19 18 41 41 H 1.07993 * 119.40739 * 180.23200 * 21 20 19 42 42 H 0.96705 * 113.99654 * 89.99664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6470 -2.1984 1.1813 6 7 2.0525 -2.8689 2.4193 7 6 3.4143 -3.3912 2.5572 8 6 3.5246 -4.7052 1.8277 9 1 2.6661 -5.1110 1.3131 10 6 4.7213 -5.3900 1.8180 11 7 5.7666 -4.8961 2.4450 12 14 4.8582 -7.0184 0.9131 13 1 5.2734 -6.7712 -0.4910 14 1 5.8689 -7.8744 1.5847 15 1 3.5412 -7.7044 0.9264 16 6 1.1728 -3.0052 3.4312 17 8 0.0102 -2.6857 3.2732 18 6 1.6203 -3.5422 4.7303 19 6 2.6553 -4.4825 4.7943 20 6 3.0346 -4.9584 6.0365 21 6 2.3942 -4.4889 7.1696 22 7 1.4244 -3.5989 7.0866 23 6 1.0197 -3.1158 5.9242 24 8 0.0203 -2.2026 5.8861 25 1 -0.3635 0.5730 0.8531 26 1 -0.3634 0.4523 -0.9229 27 1 -0.3634 -1.0253 0.0697 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.5976 -0.2680 2.1365 33 1 3.1254 -0.6359 1.3003 34 1 2.1455 -2.6683 0.3335 35 1 0.5670 -2.2819 1.0599 36 1 4.1214 -2.6790 2.1318 37 1 3.6406 -3.5415 3.6128 38 1 6.6086 -5.3777 2.4378 39 1 3.1430 -4.8308 3.8958 40 1 3.8272 -5.6870 6.1217 41 1 2.6935 -4.8582 8.1393 42 1 0.3232 -1.2857 5.9395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103440333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = -53.181391 kcal Electronic energy + Delta-G solvation = -24159.746051 eV Core-core repulsion = 20718.858062 eV Total energy + Delta-G solvation = -3440.887990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94447 -40.17363 -38.24526 -37.73891 -36.60376 -34.55636 -33.70866 -31.51719 -30.40986 -29.02737 -28.01423 -25.80861 -25.22385 -24.27390 -23.67073 -20.94933 -20.69886 -19.69613 -18.64861 -18.22540 -17.93267 -17.23326 -16.77289 -16.40927 -16.17614 -15.90132 -15.67412 -14.92160 -14.80909 -14.65137 -14.48121 -14.26041 -14.11197 -13.63012 -13.42475 -13.14035 -12.90116 -12.84492 -12.75258 -12.71484 -12.32140 -12.23379 -12.04753 -11.94634 -11.61984 -11.53464 -11.41835 -11.10155 -10.86176 -10.54388 -10.20503 -9.96188 -9.45605 -8.25125 -6.41382 -0.31229 0.16860 1.41128 1.45528 1.53426 1.81704 2.17048 2.39375 2.56494 2.80687 3.03631 3.55484 3.82871 3.93793 3.95618 4.04142 4.06920 4.14850 4.31397 4.51752 4.53969 4.55450 4.68478 4.75114 4.80298 4.87757 4.95180 5.01997 5.10545 5.13765 5.14240 5.19051 5.27075 5.31982 5.47310 5.49313 5.56244 5.64093 5.78373 5.97013 6.48215 6.55709 6.74149 6.83633 7.21089 7.33411 8.78761 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.007585 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.500519 B = 3690.544209 C = 6108.227264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.115 4.115 5 C 0.115 3.885 6 N -0.590 5.590 7 C 0.223 3.777 8 C -0.554 4.554 9 H 0.051 0.949 10 C 0.037 3.963 11 N -0.903 5.903 12 Si 0.950 3.050 13 H -0.277 1.277 14 H -0.274 1.274 15 H -0.275 1.275 16 C 0.556 3.444 17 O -0.574 6.574 18 C -0.224 4.224 19 C -0.050 4.050 20 C -0.191 4.191 21 C 0.147 3.853 22 N -0.529 5.529 23 C 0.346 3.654 24 O -0.477 6.477 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.015 0.985 37 H 0.063 0.937 38 H 0.273 0.727 39 H 0.182 0.818 40 H 0.166 0.834 41 H 0.207 0.793 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 5.692 2.042 6.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.320 5.320 7 C 0.103 3.897 8 C -0.592 4.592 9 H 0.070 0.930 10 C -0.166 4.166 11 N -0.541 5.541 12 Si 0.776 3.224 13 H -0.202 1.202 14 H -0.199 1.199 15 H -0.199 1.199 16 C 0.344 3.656 17 O -0.456 6.456 18 C -0.230 4.230 19 C -0.075 4.075 20 C -0.210 4.210 21 C -0.009 4.009 22 N -0.249 5.249 23 C 0.167 3.833 24 O -0.286 6.286 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.199 0.801 40 H 0.184 0.816 41 H 0.223 0.777 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.159 5.706 2.651 7.040 hybrid contribution 0.948 -0.745 -1.301 1.774 sum -2.211 4.961 1.350 5.596 Atomic orbital electron populations 1.21860 0.94890 1.01422 1.02028 1.21042 0.96150 0.96836 0.96968 1.21786 1.00926 0.94815 1.02250 1.21875 1.00585 0.94121 0.98801 1.21532 1.00546 0.92662 0.86015 1.48108 1.13839 1.55428 1.14577 1.19998 0.77383 0.93250 0.99083 1.21527 0.96989 1.06060 1.34604 0.93032 1.25531 0.94893 1.00685 0.95504 1.69988 1.02018 1.40025 1.42036 0.85666 0.78032 0.79779 0.78943 1.20234 1.19929 1.19939 1.18155 0.85000 0.78176 0.84230 1.90690 1.18089 1.53397 1.83436 1.21095 1.01630 1.05724 0.94572 1.23400 0.90613 0.90819 1.02680 1.22468 1.03502 1.02942 0.92111 1.23408 0.87898 0.89081 1.00564 1.67346 1.15529 1.14677 1.27305 1.19192 0.85891 0.91318 0.86934 1.84703 1.29561 1.19257 1.95067 0.93167 0.91131 0.93685 0.90750 0.92736 0.91182 0.92857 0.93126 0.92458 0.90902 0.90793 0.96649 0.91947 0.91796 0.80122 0.81603 0.77687 0.72762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.05 71.98 0.65 -2.89 16 2 C -0.09 -2.30 2.91 -10.80 -0.03 -2.33 16 3 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 4 C -0.12 -3.67 5.00 30.59 0.15 -3.51 16 5 C 0.11 4.34 5.34 86.38 0.46 4.80 16 6 N -0.59 -25.37 2.48 -829.90 -2.06 -27.42 16 7 C 0.22 10.28 4.68 85.63 0.40 10.68 16 8 C -0.55 -27.25 7.57 25.60 0.19 -27.05 16 9 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 10 C 0.04 1.79 5.39 84.65 0.46 2.24 16 11 N -0.90 -45.20 13.29 21.45 0.28 -44.92 16 12 Si 0.95 39.14 29.54 68.60 2.03 41.16 16 13 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 14 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 C 0.56 24.69 7.33 86.69 0.64 25.32 16 17 O -0.57 -27.52 15.33 13.72 0.21 -27.31 16 18 C -0.22 -9.16 5.58 -19.91 -0.11 -9.27 16 19 C -0.05 -1.96 7.58 22.72 0.17 -1.79 16 20 C -0.19 -5.82 10.09 22.32 0.23 -5.59 16 21 C 0.15 4.01 11.17 84.71 0.95 4.96 16 22 N -0.53 -17.74 10.37 -307.99 -3.19 -20.94 16 23 C 0.35 13.03 7.74 85.13 0.66 13.69 16 24 O -0.48 -17.08 12.13 -69.52 -0.84 -17.92 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.04 1.24 6.33 -2.38 -0.02 1.22 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.78 8.05 -2.39 -0.02 2.76 16 35 H 0.07 2.86 5.41 -2.39 -0.01 2.85 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 2.92 3.87 -2.63 -0.01 2.91 16 38 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 39 H 0.18 8.03 3.55 -2.91 -0.01 8.02 16 40 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 42 H 0.41 10.69 9.06 -74.05 -0.67 10.02 16 Total: -1.00 -61.85 344.85 2.27 -59.59 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.37 Total: 30.79 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.47 Total: 6.96 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -4.97 Total: -93.28 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.63 Total: -45.23 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.16 kcal Total: -61.85 2.27 -59.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.404 kcal (2) G-P(sol) polarization free energy of solvation -61.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds