Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.52996 * 110.54223 * 300.70619 * 4 2 1 6 6 C 1.54224 * 110.61155 * 177.85489 * 4 2 1 7 7 C 1.51321 * 103.55500 * 241.48764 * 6 4 2 8 8 O 1.21229 * 125.39332 * 180.02562 * 7 6 4 9 9 N 1.33877 * 109.20680 * 359.97438 * 7 6 4 10 10 C 1.46500 * 122.75833 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46876 * 89.97976 * 10 9 7 12 12 H 1.08999 * 109.47178 * 54.99674 * 11 10 9 13 13 C 1.47194 * 109.47395 * 294.99730 * 11 10 9 14 14 N 6.69419 * 120.19490 * 258.80503 * 2 1 3 15 15 C 1.52998 * 109.46996 * 174.99597 * 11 10 9 16 16 C 1.50701 * 109.47501 * 184.99955 * 15 11 10 17 17 H 1.08003 * 119.99288 * 0.02562 * 16 15 11 18 18 C 1.37870 * 120.00496 * 179.97438 * 16 15 11 19 19 N 1.31519 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47053 * 120.00501 * 20 18 16 23 23 H 1.48501 * 109.46957 * 239.99935 * 20 18 16 24 24 C 1.34221 * 114.52750 * 359.91105 * 9 7 6 25 25 O 1.21225 * 125.58867 * 180.09805 * 24 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08997 * 109.47708 * 59.99337 * 5 4 2 34 34 H 1.08998 * 109.47351 * 179.97438 * 5 4 2 35 35 H 1.09006 * 109.47457 * 299.99425 * 5 4 2 36 36 H 1.09000 * 110.60454 * 0.02562 * 6 4 2 37 37 H 1.08996 * 110.61254 * 122.96979 * 6 4 2 38 38 H 1.08997 * 109.46618 * 209.97823 * 10 9 7 39 39 H 1.09001 * 109.47364 * 329.97960 * 10 9 7 40 40 H 1.08996 * 109.47467 * 305.00126 * 15 11 10 41 41 H 1.08998 * 109.47307 * 64.99764 * 15 11 10 42 42 H 0.96996 * 120.00021 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5293 -2.1631 -1.2828 6 6 3.5810 -0.6900 -1.3030 7 6 3.8760 0.0688 -2.5786 8 8 4.9821 0.3216 -3.0054 9 7 2.7218 0.4156 -3.1617 10 6 2.6628 1.1635 -4.4200 11 6 2.6424 0.1837 -5.5950 12 1 1.8189 -0.5190 -5.4679 13 6 3.9149 -0.5547 -5.6403 14 7 4.8968 -1.1233 -5.6758 15 6 2.4552 0.9579 -6.9013 16 6 2.3122 -0.0132 -8.0448 17 1 2.3505 -1.0763 -7.8583 18 6 2.1313 0.4554 -9.3288 19 7 2.0841 1.7500 -9.5558 20 14 1.9533 -0.7485 -10.7460 21 1 2.0418 -2.1379 -10.2294 22 1 0.6374 -0.5473 -11.4041 23 1 3.0400 -0.5172 -11.7314 24 6 1.6227 0.0201 -2.5006 25 8 0.4792 0.2240 -2.8475 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.4394 -2.1623 -1.2950 34 1 1.9020 -2.6598 -2.1786 35 1 1.8823 -2.6944 -0.3989 36 1 3.9843 -0.1609 -0.4396 37 1 3.9837 -1.7014 -1.3565 38 1 1.7587 1.7721 -4.4388 39 1 3.5373 1.8091 -4.5004 40 1 1.5585 1.5738 -6.8334 41 1 3.3220 1.5961 -7.0729 42 1 1.9573 2.0796 -10.4591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116911591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = -58.891319 kcal Electronic energy + Delta-G solvation = -24312.263622 eV Core-core repulsion = 20871.128031 eV Total energy + Delta-G solvation = -3441.135591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.32004 -38.75451 -37.40215 -36.47867 -35.40591 -33.82378 -32.54236 -31.38400 -29.24459 -27.31822 -26.63466 -24.90028 -23.96731 -22.56951 -21.88782 -20.86537 -18.85961 -17.42369 -16.97094 -16.62467 -16.18382 -15.95440 -15.35573 -14.92555 -14.67061 -14.55318 -14.26809 -13.81397 -13.66545 -13.49539 -13.11248 -12.72296 -12.61241 -12.49803 -12.41097 -12.19409 -12.13277 -12.04427 -11.75207 -11.49450 -11.43336 -11.11666 -11.08713 -10.90626 -10.88971 -10.67102 -10.40454 -10.30519 -9.90466 -9.75368 -9.48806 -9.17779 -8.47656 -6.11518 -4.14899 1.53717 2.53408 2.71874 3.28009 3.36056 3.40709 3.61131 3.65807 3.82977 4.01053 4.15514 4.34727 4.39562 4.61282 4.69719 4.76675 4.98623 5.17052 5.22009 5.26467 5.26826 5.36631 5.37496 5.39725 5.44441 5.49091 5.52880 5.63129 5.66609 5.74601 5.79214 5.86892 5.99982 6.19261 6.22820 6.40093 6.88081 7.35509 7.37002 7.46242 7.80878 7.83895 8.18964 8.42441 8.88763 9.50659 10.99475 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.004242 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.464270 B = 6598.762607 C = 6947.241857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.160 4.160 4 C -0.094 4.094 5 C -0.136 4.136 6 C -0.155 4.155 7 C 0.521 3.479 8 O -0.469 6.469 9 N -0.574 5.574 10 C 0.104 3.896 11 C -0.005 4.005 12 H 0.104 0.896 13 C 0.231 3.769 14 N -0.453 5.453 15 C 0.034 3.966 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.537 3.463 25 O -0.466 6.466 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 -2.493 22.556 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.091 4.091 3 C -0.218 4.218 4 C -0.097 4.097 5 C -0.194 4.194 6 C -0.195 4.195 7 C 0.309 3.691 8 O -0.339 6.339 9 N -0.317 5.317 10 C -0.018 4.018 11 C -0.028 4.028 12 H 0.122 0.878 13 C -0.087 4.087 14 N -0.130 5.130 15 C -0.004 4.004 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C 0.325 3.675 25 O -0.337 6.337 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.861 -2.949 21.908 22.184 hybrid contribution -0.393 -0.334 -1.076 1.193 sum -2.254 -3.283 20.833 21.210 Atomic orbital electron populations 1.22037 0.93803 1.02712 1.03106 1.21029 0.97165 0.95794 0.95071 1.22033 1.01231 0.95774 1.02717 1.21582 0.95004 0.98310 0.94827 1.21820 1.02797 0.91662 1.03086 1.22742 0.95440 1.03705 0.97573 1.20760 0.83741 0.78542 0.86025 1.90832 1.23115 1.52515 1.67443 1.46999 1.09093 1.51387 1.24219 1.22074 1.05851 0.94239 0.79609 1.19559 0.88273 0.96309 0.98616 0.87776 1.28934 0.94472 0.93300 0.91970 1.80968 1.11742 1.10497 1.09764 1.19161 0.98839 0.95286 0.87147 1.21113 1.50617 0.92864 0.91830 0.92491 1.24939 0.94877 0.95171 0.98882 1.69943 1.49435 1.12192 1.21293 0.86516 0.77752 0.81418 0.82292 1.19702 1.20760 1.20917 1.20661 0.84377 0.77678 0.84762 1.90738 1.18872 1.53772 1.70290 0.90605 0.92527 0.92070 0.89500 0.91602 0.92264 0.92490 0.90485 0.91770 0.90722 0.86135 0.86378 0.86964 0.88297 0.93942 0.95246 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.56 37.16 0.32 -0.93 16 2 C -0.07 -0.52 2.28 -90.63 -0.21 -0.72 16 3 C -0.16 -1.21 8.63 37.15 0.32 -0.89 16 4 C -0.09 -0.84 0.60 -154.72 -0.09 -0.93 16 5 C -0.14 -1.06 8.06 37.16 0.30 -0.76 16 6 C -0.16 -1.40 5.78 -26.94 -0.16 -1.55 16 7 C 0.52 7.22 7.37 -11.08 -0.08 7.14 16 8 O -0.47 -8.31 16.49 5.60 0.09 -8.21 16 9 N -0.57 -8.00 2.46 -115.24 -0.28 -8.29 16 10 C 0.10 1.63 5.01 -4.04 -0.02 1.61 16 11 C -0.01 -0.10 2.42 -93.41 -0.23 -0.32 16 12 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 13 C 0.23 5.00 12.14 -20.79 -0.25 4.74 16 14 N -0.45 -10.58 18.46 42.12 0.78 -9.80 16 15 C 0.03 0.81 4.42 -27.88 -0.12 0.68 16 16 C -0.53 -14.24 8.60 -34.44 -0.30 -14.53 16 17 H 0.06 1.55 7.59 -52.48 -0.40 1.15 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.54 6.80 5.25 -10.93 -0.06 6.74 16 25 O -0.47 -6.95 15.36 5.61 0.09 -6.86 16 26 H 0.08 0.78 5.99 -51.93 -0.31 0.47 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.44 6.50 -51.93 -0.34 0.10 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 32 H 0.06 0.54 7.18 -51.93 -0.37 0.16 16 33 H 0.08 0.62 6.52 -51.93 -0.34 0.28 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.12 0.82 6.30 -51.93 -0.33 0.49 16 37 H 0.12 0.93 7.74 -51.93 -0.40 0.53 16 38 H 0.11 1.61 7.84 -51.93 -0.41 1.20 16 39 H 0.10 1.56 7.83 -51.93 -0.41 1.15 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -33.03 344.83 -5.24 -38.26 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.15 Total: -3.85 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.67 Total: 1.93 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 1.23 Total: -42.99 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.18 Total: -15.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.03 -5.24 -38.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116911591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.627 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds