Wall clock time and date at job start Tue Mar 31 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.52996 * 110.54223 * 300.70619 * 4 2 1 6 6 C 1.54224 * 110.61155 * 177.85489 * 4 2 1 7 7 C 1.51321 * 103.55500 * 241.48764 * 6 4 2 8 8 O 1.21229 * 125.39332 * 180.02562 * 7 6 4 9 9 N 1.33877 * 109.20680 * 359.97438 * 7 6 4 10 10 C 1.46500 * 122.75833 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.46876 * 89.97976 * 10 9 7 12 12 H 1.08999 * 109.47178 * 54.99674 * 11 10 9 13 13 C 1.47194 * 109.47395 * 294.99730 * 11 10 9 14 14 N 6.69419 * 120.19490 * 258.80503 * 2 1 3 15 15 C 1.52998 * 109.46996 * 174.99597 * 11 10 9 16 16 C 1.50701 * 109.47501 * 184.99955 * 15 11 10 17 17 H 1.08003 * 119.99288 * 0.02562 * 16 15 11 18 18 C 1.37870 * 120.00496 * 179.97438 * 16 15 11 19 19 N 1.31519 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47053 * 120.00501 * 20 18 16 23 23 H 1.48501 * 109.46957 * 239.99935 * 20 18 16 24 24 C 1.34221 * 114.52750 * 359.91105 * 9 7 6 25 25 O 1.21225 * 125.58867 * 180.09805 * 24 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08997 * 109.47708 * 59.99337 * 5 4 2 34 34 H 1.08998 * 109.47351 * 179.97438 * 5 4 2 35 35 H 1.09006 * 109.47457 * 299.99425 * 5 4 2 36 36 H 1.09000 * 110.60454 * 0.02562 * 6 4 2 37 37 H 1.08996 * 110.61254 * 122.96979 * 6 4 2 38 38 H 1.08997 * 109.46618 * 209.97823 * 10 9 7 39 39 H 1.09001 * 109.47364 * 329.97960 * 10 9 7 40 40 H 1.08996 * 109.47467 * 305.00126 * 15 11 10 41 41 H 1.08998 * 109.47307 * 64.99764 * 15 11 10 42 42 H 0.96996 * 120.00021 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5293 -2.1631 -1.2828 6 6 3.5810 -0.6900 -1.3030 7 6 3.8760 0.0688 -2.5786 8 8 4.9821 0.3216 -3.0054 9 7 2.7218 0.4156 -3.1617 10 6 2.6628 1.1635 -4.4200 11 6 2.6424 0.1837 -5.5950 12 1 1.8189 -0.5190 -5.4679 13 6 3.9149 -0.5547 -5.6403 14 7 4.8968 -1.1233 -5.6758 15 6 2.4552 0.9579 -6.9013 16 6 2.3122 -0.0132 -8.0448 17 1 2.3505 -1.0763 -7.8583 18 6 2.1313 0.4554 -9.3288 19 7 2.0841 1.7500 -9.5558 20 14 1.9533 -0.7485 -10.7460 21 1 2.0418 -2.1379 -10.2294 22 1 0.6374 -0.5473 -11.4041 23 1 3.0400 -0.5172 -11.7314 24 6 1.6227 0.0201 -2.5006 25 8 0.4792 0.2240 -2.8475 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.4394 -2.1623 -1.2950 34 1 1.9020 -2.6598 -2.1786 35 1 1.8823 -2.6944 -0.3989 36 1 3.9843 -0.1609 -0.4396 37 1 3.9837 -1.7014 -1.3565 38 1 1.7587 1.7721 -4.4388 39 1 3.5373 1.8091 -4.5004 40 1 1.5585 1.5738 -6.8334 41 1 3.3220 1.5961 -7.0729 42 1 1.9573 2.0796 -10.4591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116911591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:23 Heat of formation + Delta-G solvation = -78.940936 kcal Electronic energy + Delta-G solvation = -24313.133039 eV Core-core repulsion = 20871.128031 eV Total energy + Delta-G solvation = -3442.005007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31120 -39.85269 -38.68903 -37.67224 -36.70884 -35.63399 -34.06800 -32.50382 -30.14795 -28.75689 -27.42028 -26.14966 -25.18568 -23.80416 -23.35381 -21.78858 -19.82750 -18.89904 -18.42856 -17.99289 -17.60355 -17.11113 -16.59038 -16.17677 -15.73011 -15.68229 -15.25509 -15.07447 -14.78746 -14.56827 -14.45385 -14.37799 -13.99333 -13.53587 -13.38029 -13.19656 -13.17925 -13.09299 -12.96560 -12.82272 -12.74618 -12.64917 -12.53545 -12.21706 -12.08696 -11.85489 -11.66643 -11.49909 -11.41622 -11.17895 -10.76129 -10.70479 -10.61125 -8.24968 -6.34262 0.50780 1.36302 1.38453 1.45933 1.50330 1.66668 1.85523 1.91650 2.37683 2.98397 3.07172 3.12066 3.17239 3.40172 3.67286 3.87940 3.94594 3.98809 4.18101 4.24837 4.39034 4.40657 4.58910 4.62250 4.63600 4.65215 4.77206 4.82946 4.91554 4.93078 5.06249 5.09617 5.20136 5.30454 5.35139 5.43092 5.47529 5.59235 5.70436 5.82678 6.10406 6.33995 6.64703 6.75458 6.78472 7.34522 8.86348 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.004242 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.464270 B = 6598.762607 C = 6947.241857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.066 4.066 3 C -0.162 4.162 4 C -0.084 4.084 5 C -0.137 4.137 6 C -0.142 4.142 7 C 0.514 3.486 8 O -0.514 6.514 9 N -0.579 5.579 10 C 0.109 3.891 11 C 0.007 3.993 12 H 0.112 0.888 13 C 0.240 3.760 14 N -0.481 5.481 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.921 5.921 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.282 1.282 24 C 0.532 3.468 25 O -0.493 6.493 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.007 0.993 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 -3.882 24.884 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.085 4.085 3 C -0.219 4.219 4 C -0.087 4.087 5 C -0.194 4.194 6 C -0.181 4.181 7 C 0.305 3.695 8 O -0.388 6.388 9 N -0.321 5.321 10 C -0.013 4.013 11 C -0.016 4.016 12 H 0.130 0.870 13 C -0.077 4.077 14 N -0.158 5.158 15 C 0.002 3.998 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.777 3.223 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.208 1.208 24 C 0.322 3.678 25 O -0.365 6.365 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.142 0.858 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.275 -4.351 24.262 24.754 hybrid contribution -0.306 0.138 -1.794 1.825 sum -2.581 -4.213 22.468 23.005 Atomic orbital electron populations 1.22022 0.94391 1.02973 1.02246 1.21113 0.96599 0.95569 0.95202 1.22064 1.01662 0.96061 1.02155 1.21689 0.94899 0.98727 0.93370 1.21889 1.02655 0.90706 1.04144 1.22874 0.95399 1.04205 0.95611 1.21645 0.82783 0.77884 0.87176 1.90811 1.24635 1.54410 1.68930 1.47152 1.10147 1.51355 1.23479 1.21829 1.06320 0.93469 0.79695 1.19450 0.87459 0.96455 0.98211 0.87008 1.29313 0.94560 0.92717 0.91116 1.80951 1.12614 1.11586 1.10675 1.18958 0.97567 0.94745 0.88481 1.21478 1.50220 0.93190 0.93139 0.92985 1.25715 0.94733 0.96728 1.01391 1.70033 1.50336 1.13677 1.22006 0.85593 0.78069 0.79332 0.79293 1.19469 1.19549 1.20834 1.21452 0.83563 0.77138 0.85635 1.90728 1.19838 1.54746 1.71146 0.93640 0.91191 0.91285 0.85846 0.90183 0.91559 0.95110 0.90815 0.93064 0.87270 0.83062 0.84445 0.85778 0.88695 0.94214 0.97502 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.56 71.98 0.62 -1.50 16 2 C -0.07 -0.72 2.28 -10.80 -0.02 -0.75 16 3 C -0.16 -2.04 8.63 71.98 0.62 -1.42 16 4 C -0.08 -1.27 0.60 -52.32 -0.03 -1.30 16 5 C -0.14 -1.69 8.06 71.98 0.58 -1.11 16 6 C -0.14 -2.11 5.78 30.46 0.18 -1.94 16 7 C 0.51 13.75 7.37 87.99 0.65 14.40 16 8 O -0.51 -18.22 16.49 -2.87 -0.05 -18.26 16 9 N -0.58 -15.94 2.46 -756.16 -1.86 -17.80 16 10 C 0.11 3.50 5.01 86.38 0.43 3.94 16 11 C 0.01 0.26 2.42 -12.60 -0.03 0.23 16 12 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 13 C 0.24 10.54 12.14 89.45 1.09 11.62 16 14 N -0.48 -22.72 18.46 19.99 0.37 -22.35 16 15 C 0.04 2.00 4.42 29.85 0.13 2.13 16 16 C -0.54 -29.75 8.60 25.60 0.22 -29.53 16 17 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 18 C 0.01 0.77 5.46 84.65 0.46 1.23 16 19 N -0.92 -53.72 13.29 21.45 0.28 -53.43 16 20 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 C 0.53 13.00 5.25 87.94 0.46 13.46 16 25 O -0.49 -14.65 15.36 -2.86 -0.04 -14.69 16 26 H 0.04 0.90 5.99 -2.39 -0.01 0.88 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.80 6.50 -2.38 -0.02 0.78 16 29 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.73 6.40 -2.39 -0.02 0.72 16 32 H 0.03 0.55 7.18 -2.39 -0.02 0.53 16 33 H 0.07 0.99 6.52 -2.39 -0.02 0.98 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.15 1.38 6.30 -2.39 -0.02 1.36 16 37 H 0.14 1.63 7.74 -2.39 -0.02 1.61 16 38 H 0.12 3.64 7.84 -2.39 -0.02 3.62 16 39 H 0.09 3.10 7.83 -2.39 -0.02 3.09 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -73.04 344.83 7.10 -65.94 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.02 Total: 4.81 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.35 Total: 9.47 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -1.21 Total: -93.58 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.09 Total: -32.96 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.04 7.10 -65.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116911591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.999 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds