Wall clock time and date at job start Tue Mar 31 2020 07:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47449 * 2 1 4 4 C 1.53009 * 109.47192 * 185.15016 * 3 2 1 5 5 H 1.08999 * 109.51908 * 54.50604 * 4 3 2 6 6 C 1.53246 * 109.51649 * 294.38474 * 4 3 2 7 7 C 1.53252 * 108.56089 * 184.47977 * 6 4 3 8 8 C 1.50584 * 109.16303 * 55.61522 * 7 6 4 9 9 O 1.21226 * 119.36410 * 150.90136 * 8 7 6 10 10 N 1.34147 * 121.27727 * 330.88317 * 8 7 6 11 11 C 1.46501 * 118.70342 * 180.56909 * 10 8 7 12 12 C 1.53003 * 109.47456 * 89.99884 * 11 10 8 13 13 H 1.08996 * 109.47007 * 54.99462 * 12 11 10 14 14 C 1.47205 * 109.46636 * 294.99828 * 12 11 10 15 15 N 7.95696 * 153.26156 * 340.31211 * 2 1 3 16 16 C 1.53000 * 109.47202 * 175.00268 * 12 11 10 17 17 C 1.50700 * 109.46867 * 184.99916 * 16 12 11 18 18 H 1.07999 * 120.00068 * 359.97438 * 17 16 12 19 19 C 1.37876 * 119.99893 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99995 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99963 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47289 * 89.99977 * 21 19 17 23 23 H 1.48498 * 109.47255 * 210.00372 * 21 19 17 24 24 H 1.48507 * 109.47087 * 329.99963 * 21 19 17 25 25 C 1.34139 * 122.59263 * 0.84153 * 10 8 7 26 26 O 1.21222 * 119.36077 * 179.18298 * 25 10 8 27 27 H 1.09002 * 109.46912 * 59.99885 * 1 2 3 28 28 H 1.08991 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46749 * 300.00190 * 1 2 3 30 30 H 1.08998 * 109.47234 * 239.99598 * 2 1 3 31 31 H 1.09002 * 109.46912 * 120.00115 * 2 1 3 32 32 H 1.08999 * 109.47591 * 65.14981 * 3 2 1 33 33 H 1.08999 * 109.47238 * 305.14310 * 3 2 1 34 34 H 1.08992 * 109.62361 * 64.76256 * 6 4 3 35 35 H 1.08997 * 109.77108 * 304.28809 * 6 4 3 36 36 H 1.08997 * 109.52070 * 295.70514 * 7 6 4 37 37 H 1.09002 * 109.56836 * 175.55110 * 7 6 4 38 38 H 1.08997 * 109.47118 * 210.00121 * 11 10 8 39 39 H 1.08999 * 109.47084 * 329.99869 * 11 10 8 40 40 H 1.09000 * 109.47017 * 304.99598 * 16 12 11 41 41 H 1.08992 * 109.47675 * 64.99948 * 16 12 11 42 42 H 0.96997 * 119.99764 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5647 1.4443 -0.1295 5 1 3.8560 0.8735 -1.0112 6 6 4.1854 0.8095 1.1196 7 6 5.7103 0.9238 1.0185 8 6 6.0858 2.3692 0.8252 9 8 7.1558 2.7653 1.2350 10 7 5.2595 3.2270 0.2080 11 6 5.6872 4.6180 0.0393 12 6 6.4334 4.7647 -1.2884 13 1 5.8040 4.4018 -2.1009 14 6 7.6767 3.9779 -1.2419 15 7 8.6361 3.3707 -1.2061 16 6 6.7710 6.2383 -1.5236 17 6 7.3957 6.3993 -2.8855 18 1 7.5382 5.5368 -3.5196 19 6 7.7855 7.6478 -3.3219 20 7 7.6125 8.6980 -2.5495 21 14 8.5593 7.8475 -5.0103 22 1 7.4959 8.1015 -6.0153 23 1 9.5044 8.9927 -4.9894 24 1 9.2928 6.6069 -5.3685 25 6 4.0548 2.8626 -0.2560 26 8 3.3490 3.6900 -0.7915 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7541 1.9290 0.9325 33 1 1.6035 1.9822 -0.8403 34 1 3.9002 -0.2409 1.1765 35 1 3.8374 1.3322 2.0105 36 1 6.0639 0.3389 0.1695 37 1 6.1661 0.5484 1.9347 38 1 4.8132 5.2693 0.0387 39 1 6.3478 4.8971 0.8601 40 1 5.8591 6.8330 -1.4696 41 1 7.4714 6.5770 -0.7603 42 1 7.8870 9.5762 -2.8564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130056161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:39 Heat of formation + Delta-G solvation = -71.530391 kcal Electronic energy + Delta-G solvation = -23704.159927 eV Core-core repulsion = 20262.476265 eV Total energy + Delta-G solvation = -3441.683662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78554 -38.88526 -37.19592 -36.25091 -35.08915 -33.98823 -33.27605 -31.55363 -29.88464 -27.37396 -25.58847 -24.66273 -23.06627 -22.88554 -21.81747 -21.05838 -18.57410 -17.61302 -17.20616 -16.71517 -16.26894 -15.79319 -15.57693 -15.00741 -14.59896 -14.52240 -14.45034 -14.29387 -13.57449 -13.29122 -13.21471 -13.03221 -12.75529 -12.47182 -12.31923 -12.06280 -11.95968 -11.67296 -11.49021 -11.34465 -11.29663 -11.16213 -11.06260 -10.83337 -10.80859 -10.65674 -10.34582 -10.19696 -10.06483 -9.73379 -9.43701 -9.12717 -8.43647 -6.07692 -4.10861 1.59098 2.55632 2.82614 3.30952 3.37349 3.42100 3.68731 3.72391 3.82142 4.21031 4.26961 4.37676 4.42489 4.70576 4.73802 4.79561 4.84178 4.94766 5.05926 5.29322 5.30239 5.33954 5.38266 5.42893 5.46755 5.49671 5.56943 5.60577 5.62490 5.67169 5.84478 5.92639 5.93959 6.04749 6.32857 6.48251 7.04216 7.43220 7.52152 7.53537 7.82464 7.87111 8.23605 8.50095 8.92575 9.54119 11.03317 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.003917 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.110388 B = 7147.251431 C = 7901.359774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.111 4.111 5 H 0.115 0.885 6 C -0.119 4.119 7 C -0.142 4.142 8 C 0.512 3.488 9 O -0.485 6.485 10 N -0.567 5.567 11 C 0.099 3.901 12 C -0.002 4.002 13 H 0.103 0.897 14 C 0.235 3.765 15 N -0.459 5.459 16 C 0.035 3.965 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.521 3.479 26 O -0.488 6.488 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.439 -18.168 8.601 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.132 4.132 5 H 0.132 0.868 6 C -0.157 4.157 7 C -0.182 4.182 8 C 0.301 3.699 9 O -0.356 6.356 10 N -0.310 5.310 11 C -0.023 4.023 12 C -0.025 4.025 13 H 0.120 0.880 14 C -0.083 4.083 15 N -0.135 5.135 16 C -0.003 4.003 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.310 3.690 26 O -0.359 6.359 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.763 -18.252 8.611 23.878 hybrid contribution 0.235 0.524 -1.052 1.198 sum -12.527 -17.728 7.560 22.986 Atomic orbital electron populations 1.21767 0.95608 1.01590 1.02129 1.21569 0.96172 0.96191 1.02228 1.21531 0.91292 0.97583 1.03913 1.21574 0.98192 0.92282 1.01108 0.86764 1.21848 0.93113 1.03123 0.97591 1.21942 0.97709 0.92326 1.06211 1.20965 0.83902 0.88662 0.76375 1.90813 1.21390 1.78197 1.45212 1.46753 1.17620 1.13423 1.53157 1.22051 1.01355 0.79930 0.98925 1.19505 0.86997 0.99014 0.96954 0.87964 1.28972 0.94711 0.92312 0.92269 1.80975 1.11284 1.11877 1.09375 1.19141 0.98367 0.84808 0.98031 1.21086 1.40852 0.93567 1.00869 0.92597 1.24943 0.95593 0.95895 0.97494 1.69937 1.47293 0.99069 1.36596 0.86573 0.79268 0.77824 0.84314 1.20416 1.21102 1.19898 1.20848 0.80150 0.91231 0.76782 1.90752 1.54122 1.52423 1.38640 0.92493 0.92770 0.92682 0.91715 0.91723 0.91277 0.89888 0.88831 0.90282 0.87427 0.87049 0.86845 0.88189 0.93989 0.95308 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.67 5.58 -26.73 -0.15 -0.82 16 3 C -0.11 -0.77 4.37 -26.73 -0.12 -0.89 16 4 C -0.11 -0.89 2.43 -91.69 -0.22 -1.11 16 5 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.12 -0.72 5.01 -26.47 -0.13 -0.85 16 7 C -0.14 -1.19 6.07 -27.81 -0.17 -1.36 16 8 C 0.51 7.01 6.80 -11.32 -0.08 6.94 16 9 O -0.49 -8.70 14.77 5.60 0.08 -8.61 16 10 N -0.57 -7.97 2.46 -115.78 -0.28 -8.25 16 11 C 0.10 1.64 4.59 -4.04 -0.02 1.62 16 12 C 0.00 -0.04 2.42 -93.40 -0.23 -0.27 16 13 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 14 C 0.23 5.20 11.69 -20.76 -0.24 4.95 16 15 N -0.46 -10.86 18.26 42.15 0.77 -10.09 16 16 C 0.04 0.85 4.42 -27.88 -0.12 0.73 16 17 C -0.53 -14.51 8.60 -34.44 -0.30 -14.80 16 18 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.52 6.53 7.16 -11.32 -0.08 6.44 16 26 O -0.49 -7.56 15.37 5.61 0.09 -7.47 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.28 6.96 -51.93 -0.36 -0.08 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.74 7.64 -51.93 -0.40 0.34 16 34 H 0.09 0.34 6.96 -51.93 -0.36 -0.02 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 1.78 7.27 -51.93 -0.38 1.40 16 39 H 0.10 1.70 7.28 -51.93 -0.38 1.32 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -34.17 349.22 -6.43 -40.60 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.48 Total: -4.70 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.58 Total: 1.79 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 1.22 Total: -43.65 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.17 Total: -16.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.17 -6.43 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130056161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.933 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds