Wall clock time and date at job start Tue Mar 31 2020 07:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47449 * 2 1 4 4 C 1.53009 * 109.47192 * 185.15016 * 3 2 1 5 5 H 1.08999 * 109.51908 * 54.50604 * 4 3 2 6 6 C 1.53246 * 109.51649 * 294.38474 * 4 3 2 7 7 C 1.53252 * 108.56089 * 184.47977 * 6 4 3 8 8 C 1.50584 * 109.16303 * 55.61522 * 7 6 4 9 9 O 1.21226 * 119.36410 * 150.90136 * 8 7 6 10 10 N 1.34147 * 121.27727 * 330.88317 * 8 7 6 11 11 C 1.46501 * 118.70342 * 180.56909 * 10 8 7 12 12 C 1.53003 * 109.47456 * 89.99884 * 11 10 8 13 13 H 1.08996 * 109.47007 * 54.99462 * 12 11 10 14 14 C 1.47205 * 109.46636 * 294.99828 * 12 11 10 15 15 N 7.95696 * 153.26156 * 340.31211 * 2 1 3 16 16 C 1.53000 * 109.47202 * 175.00268 * 12 11 10 17 17 C 1.50700 * 109.46867 * 184.99916 * 16 12 11 18 18 H 1.07999 * 120.00068 * 359.97438 * 17 16 12 19 19 C 1.37876 * 119.99893 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99995 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99963 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47289 * 89.99977 * 21 19 17 23 23 H 1.48498 * 109.47255 * 210.00372 * 21 19 17 24 24 H 1.48507 * 109.47087 * 329.99963 * 21 19 17 25 25 C 1.34139 * 122.59263 * 0.84153 * 10 8 7 26 26 O 1.21222 * 119.36077 * 179.18298 * 25 10 8 27 27 H 1.09002 * 109.46912 * 59.99885 * 1 2 3 28 28 H 1.08991 * 109.47130 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46749 * 300.00190 * 1 2 3 30 30 H 1.08998 * 109.47234 * 239.99598 * 2 1 3 31 31 H 1.09002 * 109.46912 * 120.00115 * 2 1 3 32 32 H 1.08999 * 109.47591 * 65.14981 * 3 2 1 33 33 H 1.08999 * 109.47238 * 305.14310 * 3 2 1 34 34 H 1.08992 * 109.62361 * 64.76256 * 6 4 3 35 35 H 1.08997 * 109.77108 * 304.28809 * 6 4 3 36 36 H 1.08997 * 109.52070 * 295.70514 * 7 6 4 37 37 H 1.09002 * 109.56836 * 175.55110 * 7 6 4 38 38 H 1.08997 * 109.47118 * 210.00121 * 11 10 8 39 39 H 1.08999 * 109.47084 * 329.99869 * 11 10 8 40 40 H 1.09000 * 109.47017 * 304.99598 * 16 12 11 41 41 H 1.08992 * 109.47675 * 64.99948 * 16 12 11 42 42 H 0.96997 * 119.99764 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5647 1.4443 -0.1295 5 1 3.8560 0.8735 -1.0112 6 6 4.1854 0.8095 1.1196 7 6 5.7103 0.9238 1.0185 8 6 6.0858 2.3692 0.8252 9 8 7.1558 2.7653 1.2350 10 7 5.2595 3.2270 0.2080 11 6 5.6872 4.6180 0.0393 12 6 6.4334 4.7647 -1.2884 13 1 5.8040 4.4018 -2.1009 14 6 7.6767 3.9779 -1.2419 15 7 8.6361 3.3707 -1.2061 16 6 6.7710 6.2383 -1.5236 17 6 7.3957 6.3993 -2.8855 18 1 7.5382 5.5368 -3.5196 19 6 7.7855 7.6478 -3.3219 20 7 7.6125 8.6980 -2.5495 21 14 8.5593 7.8475 -5.0103 22 1 7.4959 8.1015 -6.0153 23 1 9.5044 8.9927 -4.9894 24 1 9.2928 6.6069 -5.3685 25 6 4.0548 2.8626 -0.2560 26 8 3.3490 3.6900 -0.7915 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7541 1.9290 0.9325 33 1 1.6035 1.9822 -0.8403 34 1 3.9002 -0.2409 1.1765 35 1 3.8374 1.3322 2.0105 36 1 6.0639 0.3389 0.1695 37 1 6.1661 0.5484 1.9347 38 1 4.8132 5.2693 0.0387 39 1 6.3478 4.8971 0.8601 40 1 5.8591 6.8330 -1.4696 41 1 7.4714 6.5770 -0.7603 42 1 7.8870 9.5762 -2.8564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130056161.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:38 Heat of formation + Delta-G solvation = -92.178858 kcal Electronic energy + Delta-G solvation = -23705.055312 eV Core-core repulsion = 20262.476265 eV Total energy + Delta-G solvation = -3442.579047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.82947 -39.98488 -38.50634 -37.34269 -36.38555 -35.57352 -34.48306 -33.20164 -30.52917 -29.10638 -26.33213 -26.11013 -24.02331 -23.94560 -23.55125 -21.63462 -19.50130 -18.88506 -18.65145 -18.01860 -17.97311 -17.05657 -16.62483 -16.20094 -15.83276 -15.46820 -15.34559 -15.29795 -14.87573 -14.77699 -14.36527 -13.95928 -13.90934 -13.88559 -13.53843 -13.48231 -13.11039 -12.90486 -12.83996 -12.68762 -12.54757 -12.54242 -12.18624 -11.94931 -11.84426 -11.75132 -11.69048 -11.42943 -11.32776 -11.13774 -10.92932 -10.68133 -10.60563 -8.24649 -6.34414 0.56822 1.37215 1.38352 1.47467 1.51172 1.77396 1.88143 1.96088 2.37721 2.97048 3.08251 3.13320 3.57634 3.63131 3.75171 3.94628 4.03752 4.18783 4.24970 4.28105 4.38006 4.39225 4.48329 4.54184 4.65545 4.77963 4.82764 4.85098 4.92774 4.97550 5.10792 5.18153 5.21759 5.34959 5.39195 5.48144 5.49263 5.60234 5.70400 5.99544 6.10417 6.52151 6.68062 6.76991 6.79206 7.34085 8.86627 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.003917 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.110388 B = 7147.251431 C = 7901.359774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.103 4.103 5 H 0.134 0.866 6 C -0.108 4.108 7 C -0.134 4.134 8 C 0.506 3.494 9 O -0.535 6.535 10 N -0.570 5.570 11 C 0.106 3.894 12 C 0.010 3.990 13 H 0.110 0.890 14 C 0.243 3.757 15 N -0.484 5.484 16 C 0.042 3.958 17 C -0.543 4.543 18 H 0.052 0.948 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.275 1.275 25 C 0.518 3.482 26 O -0.523 6.523 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.004 0.996 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -20.781 8.521 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.124 4.124 5 H 0.152 0.848 6 C -0.145 4.145 7 C -0.173 4.173 8 C 0.298 3.702 9 O -0.410 6.410 10 N -0.312 5.312 11 C -0.017 4.017 12 C -0.013 4.013 13 H 0.128 0.872 14 C -0.073 4.073 15 N -0.161 5.161 16 C 0.004 3.996 17 C -0.581 4.581 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.780 3.220 22 H -0.190 1.190 23 H -0.206 1.206 24 H -0.200 1.200 25 C 0.310 3.690 26 O -0.396 6.396 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.808 -20.897 8.532 26.460 hybrid contribution 0.522 1.367 -1.011 1.778 sum -13.286 -19.530 7.521 24.789 Atomic orbital electron populations 1.21793 0.96032 1.02007 1.01596 1.21557 0.95773 0.94670 1.03584 1.21499 0.90595 0.98925 1.02924 1.21713 0.98544 0.88953 1.03173 0.84846 1.21895 0.90909 1.05329 0.96408 1.22072 0.99569 0.87925 1.07699 1.22134 0.82850 0.90529 0.74675 1.90795 1.23521 1.79344 1.47307 1.46899 1.18514 1.12308 1.53492 1.21716 1.00976 0.82494 0.96471 1.19376 0.86626 0.95971 0.99291 0.87194 1.29292 0.94738 0.91924 0.91378 1.80955 1.11893 1.12743 1.10472 1.18932 0.97166 0.87525 0.96018 1.21453 1.40979 0.93585 1.02098 0.92942 1.25762 0.96138 0.95718 1.01163 1.70036 1.48229 0.99534 1.38321 0.85604 0.78667 0.77596 0.80181 1.18963 1.20617 1.20032 1.21852 0.78929 0.92959 0.75250 1.90740 1.54813 1.53938 1.40151 0.93524 0.91852 0.92841 0.90960 0.89654 0.91478 0.92073 0.84800 0.89858 0.85741 0.85352 0.86235 0.89050 0.94551 0.97770 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.12 -0.86 5.58 30.59 0.17 -0.69 16 3 C -0.10 -1.24 4.37 30.60 0.13 -1.11 16 4 C -0.10 -1.35 2.43 -11.49 -0.03 -1.38 16 5 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.11 -0.84 5.01 30.76 0.15 -0.69 16 7 C -0.13 -1.78 6.07 29.90 0.18 -1.60 16 8 C 0.51 13.33 6.80 87.72 0.60 13.92 16 9 O -0.54 -19.27 14.77 -2.86 -0.04 -19.31 16 10 N -0.57 -15.73 2.46 -757.75 -1.86 -17.59 16 11 C 0.11 3.61 4.59 86.38 0.40 4.00 16 12 C 0.01 0.40 2.42 -12.60 -0.03 0.37 16 13 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 14 C 0.24 10.94 11.69 89.44 1.05 11.98 16 15 N -0.48 -23.11 18.26 20.01 0.37 -22.75 16 16 C 0.04 2.13 4.42 29.85 0.13 2.26 16 17 C -0.54 -30.44 8.60 25.60 0.22 -30.22 16 18 H 0.05 2.91 7.59 -2.91 -0.02 2.89 16 19 C 0.01 0.65 5.46 84.65 0.46 1.11 16 20 N -0.92 -54.72 13.29 21.45 0.28 -54.43 16 21 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 C 0.52 12.42 7.16 87.72 0.63 13.05 16 26 O -0.52 -16.14 15.37 -2.85 -0.04 -16.19 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.30 6.96 -2.39 -0.02 0.29 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.04 7.64 -2.39 -0.02 1.02 16 34 H 0.13 0.12 6.96 -2.39 -0.02 0.10 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.12 3.87 7.27 -2.39 -0.02 3.85 16 39 H 0.09 3.24 7.28 -2.39 -0.02 3.23 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -75.97 349.22 6.51 -69.46 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.01 Total: 3.61 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.78 Total: 10.35 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -1.21 Total: -94.77 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.09 Total: -35.50 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -75.97 6.51 -69.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130056161.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.722 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds