Wall clock time and date at job start Tue Mar 31 2020 07:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 C 1.53006 * 109.46861 * 174.84998 * 3 2 1 5 5 H 1.08998 * 109.52010 * 305.48781 * 4 3 2 6 6 C 1.53238 * 109.52111 * 65.61931 * 4 3 2 7 7 C 1.53249 * 108.56498 * 175.51890 * 6 4 3 8 8 C 1.50590 * 109.15914 * 304.38218 * 7 6 4 9 9 O 1.21223 * 119.35587 * 209.07386 * 8 7 6 10 10 N 1.34138 * 121.28013 * 29.09534 * 8 7 6 11 11 C 1.46503 * 118.70425 * 179.45814 * 10 8 7 12 12 C 1.52995 * 109.47481 * 89.99917 * 11 10 8 13 13 H 1.09005 * 109.47155 * 54.99805 * 12 11 10 14 14 C 1.47203 * 109.47166 * 295.00007 * 12 11 10 15 15 N 7.54894 * 130.92924 * 323.61090 * 2 1 3 16 16 C 1.52992 * 109.47199 * 175.00027 * 12 11 10 17 17 C 1.50700 * 109.47104 * 185.00182 * 16 12 11 18 18 H 1.08003 * 120.00312 * 359.97438 * 17 16 12 19 19 C 1.37883 * 120.00045 * 179.97438 * 17 16 12 20 20 N 1.31514 * 120.00060 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99879 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47398 * 89.99936 * 21 19 17 23 23 H 1.48501 * 109.46837 * 209.99731 * 21 19 17 24 24 H 1.48495 * 109.47140 * 329.99704 * 21 19 17 25 25 C 1.34207 * 122.60522 * 359.52117 * 10 8 7 26 26 O 1.21235 * 119.40848 * 180.48960 * 25 10 8 27 27 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47382 * 299.99828 * 1 2 3 29 29 H 1.09004 * 109.47030 * 60.00443 * 1 2 3 30 30 H 1.09004 * 109.47691 * 240.00199 * 2 1 3 31 31 H 1.09004 * 109.47495 * 119.99816 * 2 1 3 32 32 H 1.08997 * 109.47448 * 294.84922 * 3 2 1 33 33 H 1.09003 * 109.47120 * 54.85218 * 3 2 1 34 34 H 1.09003 * 109.62186 * 295.23614 * 6 4 3 35 35 H 1.08999 * 109.62526 * 55.60400 * 6 4 3 36 36 H 1.08997 * 109.52540 * 64.28761 * 7 6 4 37 37 H 1.08998 * 109.51921 * 184.48013 * 7 6 4 38 38 H 1.09001 * 109.46930 * 210.00001 * 11 10 8 39 39 H 1.09000 * 109.46965 * 329.99549 * 11 10 8 40 40 H 1.09000 * 109.47382 * 304.99680 * 16 12 11 41 41 H 1.08997 * 109.47646 * 64.99916 * 16 12 11 42 42 H 0.97001 * 119.99903 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5645 1.4445 0.1295 5 1 3.8559 0.8738 1.0113 6 6 4.1853 0.8098 -1.1195 7 6 5.7101 0.9242 -1.0184 8 6 6.0856 2.3697 -0.8251 9 8 7.1556 2.7657 -1.2345 10 7 5.2590 3.2275 -0.2083 11 6 5.6864 4.6187 -0.0401 12 6 5.2379 5.4400 -1.2505 13 1 4.1621 5.3292 -1.3864 14 6 5.9364 4.9610 -2.4545 15 7 6.4755 4.5913 -3.3836 16 6 5.5736 6.9145 -1.0190 17 6 5.0231 7.7392 -2.1538 18 1 4.4878 7.2595 -2.9599 19 6 5.2029 9.1063 -2.1631 20 7 4.7230 9.8259 -3.1537 21 14 6.1282 9.9361 -0.7686 22 1 7.5748 9.9932 -1.0993 23 1 5.6086 11.3145 -0.5810 24 1 5.9369 9.1603 0.4831 25 6 4.0565 2.8615 0.2619 26 8 3.3521 3.6872 0.8022 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7539 1.9291 -0.9325 33 1 1.6033 1.9823 0.8403 34 1 3.9001 -0.2407 -1.1765 35 1 3.8343 1.3331 -2.0090 36 1 6.0639 0.3394 -0.1694 37 1 6.1651 0.5492 -1.9351 38 1 5.2377 5.0297 0.8643 39 1 6.7725 4.6575 0.0432 40 1 5.1289 7.2454 -0.0804 41 1 6.6555 7.0379 -0.9717 42 1 4.8498 10.7876 -3.1604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130056402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:41 Heat of formation + Delta-G solvation = -67.197420 kcal Electronic energy + Delta-G solvation = -23857.297937 eV Core-core repulsion = 20415.802167 eV Total energy + Delta-G solvation = -3441.495770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.83814 -38.93627 -37.24088 -36.31433 -35.13519 -34.01833 -33.25506 -31.71644 -29.89907 -27.84713 -25.60507 -24.71532 -23.13592 -22.90421 -21.50687 -21.09602 -18.57228 -17.64043 -17.27488 -16.68497 -16.63803 -16.15675 -15.59814 -14.87925 -14.63984 -14.57921 -14.45148 -14.10073 -13.52517 -13.46082 -13.28331 -13.16771 -12.78297 -12.49780 -12.32085 -12.28721 -11.98300 -11.87890 -11.52648 -11.41124 -11.34275 -11.26123 -11.15106 -10.92071 -10.80365 -10.52804 -10.34058 -10.11843 -9.95791 -9.91676 -9.44694 -9.27517 -8.59523 -6.08806 -4.09525 1.53673 2.48043 2.77512 3.29792 3.37105 3.37673 3.65372 3.68205 3.78655 4.20231 4.26127 4.36079 4.40591 4.67971 4.71700 4.74560 4.84663 4.92826 5.01390 5.25634 5.28296 5.31658 5.32836 5.36083 5.44399 5.46768 5.51117 5.58560 5.62222 5.68042 5.79786 5.87405 5.94671 6.06581 6.19908 6.25544 6.93462 6.97232 7.11297 7.46540 7.63156 7.77496 8.40811 8.47930 8.93570 9.50626 11.04262 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.004300 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.241506 B = 6510.699483 C = 7181.929327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.108 4.108 5 H 0.113 0.887 6 C -0.122 4.122 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.485 6.485 10 N -0.567 5.567 11 C 0.097 3.903 12 C 0.008 3.992 13 H 0.108 0.892 14 C 0.232 3.768 15 N -0.450 5.450 16 C -0.002 4.002 17 C -0.527 4.527 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.521 3.479 26 O -0.488 6.488 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.023 0.977 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -22.759 10.866 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.129 4.129 5 H 0.131 0.869 6 C -0.160 4.160 7 C -0.180 4.180 8 C 0.301 3.699 9 O -0.356 6.356 10 N -0.310 5.310 11 C -0.025 4.025 12 C -0.014 4.014 13 H 0.126 0.874 14 C -0.086 4.086 15 N -0.126 5.126 16 C -0.041 4.041 17 C -0.565 4.565 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.186 1.186 25 C 0.310 3.690 26 O -0.359 6.359 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.834 -22.495 9.455 24.701 hybrid contribution 0.322 0.862 0.886 1.277 sum -3.512 -21.633 10.340 24.233 Atomic orbital electron populations 1.21770 0.95565 1.01580 1.02233 1.21562 0.96237 0.96123 1.02128 1.21555 0.91176 0.97636 1.04164 1.21548 0.98312 0.92087 1.00941 0.86878 1.21867 0.93098 1.03205 0.97807 1.21930 0.97857 0.92103 1.06132 1.20993 0.83994 0.88657 0.76231 1.90814 1.22128 1.78341 1.44306 1.46740 1.18047 1.12956 1.53236 1.22054 1.02542 0.78068 0.99852 1.19239 0.99392 0.97862 0.84952 0.87400 1.28804 0.93370 0.91991 0.94438 1.80987 1.09473 1.10653 1.11496 1.19608 0.97555 0.87683 0.99217 1.20970 1.36710 0.91898 1.06880 0.90875 1.24973 0.95026 0.97293 0.95734 1.69904 1.45610 1.06500 1.31458 0.86814 0.80404 0.79048 0.83310 1.20202 1.21181 1.18607 1.20907 0.80123 0.91253 0.76708 1.90755 1.53487 1.52586 1.39077 0.92779 0.92533 0.92537 0.91690 0.91833 0.91031 0.89910 0.88712 0.90150 0.87373 0.87035 0.86886 0.88179 0.94079 0.95860 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.69 5.58 -26.73 -0.15 -0.84 16 3 C -0.11 -0.83 4.38 -26.73 -0.12 -0.94 16 4 C -0.11 -0.83 2.42 -91.70 -0.22 -1.05 16 5 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 6 C -0.12 -0.81 5.02 -26.48 -0.13 -0.94 16 7 C -0.14 -1.12 6.07 -27.81 -0.17 -1.29 16 8 C 0.51 6.74 6.82 -11.32 -0.08 6.66 16 9 O -0.48 -8.40 14.69 5.61 0.08 -8.31 16 10 N -0.57 -7.62 2.46 -115.76 -0.28 -7.90 16 11 C 0.10 1.50 4.58 -4.04 -0.02 1.48 16 12 C 0.01 0.15 2.42 -93.41 -0.23 -0.07 16 13 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 14 C 0.23 5.07 11.67 -20.76 -0.24 4.83 16 15 N -0.45 -10.65 18.22 42.15 0.77 -9.88 16 16 C 0.00 -0.04 3.49 -27.89 -0.10 -0.13 16 17 C -0.53 -14.70 9.15 -34.44 -0.32 -15.02 16 18 H 0.07 2.24 7.84 -52.48 -0.41 1.83 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 21 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 25 C 0.52 6.27 7.17 -11.30 -0.08 6.19 16 26 O -0.49 -7.29 15.39 5.60 0.09 -7.20 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 6.96 -51.93 -0.36 -0.05 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.74 7.63 -51.93 -0.40 0.34 16 34 H 0.09 0.37 6.96 -51.93 -0.36 0.01 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.61 7.29 -51.93 -0.38 1.23 16 39 H 0.10 1.56 7.29 -51.93 -0.38 1.18 16 40 H 0.04 0.88 7.20 -51.93 -0.37 0.50 16 41 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -35.30 345.56 -6.06 -41.37 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -6.45 Total: -3.29 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.58 Total: 0.31 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 1.26 Total: -44.59 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.17 Total: -15.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.30 -6.06 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130056402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.832 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds