Wall clock time and date at job start Tue Mar 31 2020 07:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46992 * 2 1 4 4 C 1.53006 * 109.46861 * 174.84998 * 3 2 1 5 5 H 1.08998 * 109.52010 * 305.48781 * 4 3 2 6 6 C 1.53238 * 109.52111 * 65.61931 * 4 3 2 7 7 C 1.53249 * 108.56498 * 175.51890 * 6 4 3 8 8 C 1.50590 * 109.15914 * 304.38218 * 7 6 4 9 9 O 1.21223 * 119.35587 * 209.07386 * 8 7 6 10 10 N 1.34138 * 121.28013 * 29.09534 * 8 7 6 11 11 C 1.46503 * 118.70425 * 179.45814 * 10 8 7 12 12 C 1.52995 * 109.47481 * 89.99917 * 11 10 8 13 13 H 1.09005 * 109.47155 * 54.99805 * 12 11 10 14 14 C 1.47203 * 109.47166 * 295.00007 * 12 11 10 15 15 N 7.54894 * 130.92924 * 323.61090 * 2 1 3 16 16 C 1.52992 * 109.47199 * 175.00027 * 12 11 10 17 17 C 1.50700 * 109.47104 * 185.00182 * 16 12 11 18 18 H 1.08003 * 120.00312 * 359.97438 * 17 16 12 19 19 C 1.37883 * 120.00045 * 179.97438 * 17 16 12 20 20 N 1.31514 * 120.00060 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99879 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47398 * 89.99936 * 21 19 17 23 23 H 1.48501 * 109.46837 * 209.99731 * 21 19 17 24 24 H 1.48495 * 109.47140 * 329.99704 * 21 19 17 25 25 C 1.34207 * 122.60522 * 359.52117 * 10 8 7 26 26 O 1.21235 * 119.40848 * 180.48960 * 25 10 8 27 27 H 1.09002 * 109.46686 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47382 * 299.99828 * 1 2 3 29 29 H 1.09004 * 109.47030 * 60.00443 * 1 2 3 30 30 H 1.09004 * 109.47691 * 240.00199 * 2 1 3 31 31 H 1.09004 * 109.47495 * 119.99816 * 2 1 3 32 32 H 1.08997 * 109.47448 * 294.84922 * 3 2 1 33 33 H 1.09003 * 109.47120 * 54.85218 * 3 2 1 34 34 H 1.09003 * 109.62186 * 295.23614 * 6 4 3 35 35 H 1.08999 * 109.62526 * 55.60400 * 6 4 3 36 36 H 1.08997 * 109.52540 * 64.28761 * 7 6 4 37 37 H 1.08998 * 109.51921 * 184.48013 * 7 6 4 38 38 H 1.09001 * 109.46930 * 210.00001 * 11 10 8 39 39 H 1.09000 * 109.46965 * 329.99549 * 11 10 8 40 40 H 1.09000 * 109.47382 * 304.99680 * 16 12 11 41 41 H 1.08997 * 109.47646 * 64.99916 * 16 12 11 42 42 H 0.97001 * 119.99903 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5645 1.4445 0.1295 5 1 3.8559 0.8738 1.0113 6 6 4.1853 0.8098 -1.1195 7 6 5.7101 0.9242 -1.0184 8 6 6.0856 2.3697 -0.8251 9 8 7.1556 2.7657 -1.2345 10 7 5.2590 3.2275 -0.2083 11 6 5.6864 4.6187 -0.0401 12 6 5.2379 5.4400 -1.2505 13 1 4.1621 5.3292 -1.3864 14 6 5.9364 4.9610 -2.4545 15 7 6.4755 4.5913 -3.3836 16 6 5.5736 6.9145 -1.0190 17 6 5.0231 7.7392 -2.1538 18 1 4.4878 7.2595 -2.9599 19 6 5.2029 9.1063 -2.1631 20 7 4.7230 9.8259 -3.1537 21 14 6.1282 9.9361 -0.7686 22 1 7.5748 9.9932 -1.0993 23 1 5.6086 11.3145 -0.5810 24 1 5.9369 9.1603 0.4831 25 6 4.0565 2.8615 0.2619 26 8 3.3521 3.6872 0.8022 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7539 1.9291 -0.9325 33 1 1.6033 1.9823 0.8403 34 1 3.9001 -0.2407 -1.1765 35 1 3.8343 1.3331 -2.0090 36 1 6.0639 0.3394 -0.1694 37 1 6.1651 0.5492 -1.9351 38 1 5.2377 5.0297 0.8643 39 1 6.7725 4.6575 0.0432 40 1 5.1289 7.2454 -0.0804 41 1 6.6555 7.0379 -0.9717 42 1 4.8498 10.7876 -3.1604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130056402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:41 Heat of formation + Delta-G solvation = -90.126045 kcal Electronic energy + Delta-G solvation = -23858.292197 eV Core-core repulsion = 20415.802167 eV Total energy + Delta-G solvation = -3442.490030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.82455 -39.97817 -38.53626 -37.35927 -36.38739 -35.54628 -34.49539 -33.39248 -30.53459 -29.53382 -26.33896 -26.07336 -24.03345 -23.75350 -23.42337 -21.67471 -19.56097 -18.95153 -18.76060 -18.14922 -17.89944 -17.31032 -16.41180 -16.19105 -15.78404 -15.47711 -15.31067 -15.28029 -15.02998 -14.91611 -14.44313 -14.09709 -13.92540 -13.91332 -13.56457 -13.48482 -13.26415 -12.95892 -12.85822 -12.67725 -12.55050 -12.23487 -12.09377 -11.91824 -11.83112 -11.77051 -11.70373 -11.50367 -11.34340 -11.13417 -10.95319 -10.78996 -10.70040 -8.30281 -6.36937 0.57392 1.39524 1.40884 1.49271 1.52417 1.78620 1.86997 1.96592 2.36567 2.96656 3.04766 3.11389 3.57268 3.61531 3.72993 3.87864 4.02360 4.16063 4.24250 4.26553 4.36399 4.37545 4.47211 4.53994 4.58488 4.73067 4.80452 4.84836 4.90286 4.95209 5.09303 5.09638 5.16313 5.20021 5.28516 5.37412 5.47796 5.55172 5.58615 5.99544 6.17787 6.51235 6.66595 6.71685 6.78592 7.27225 8.86612 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018585 B = 0.004300 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.241506 B = 6510.699483 C = 7181.929327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.106 4.106 4 C -0.098 4.098 5 H 0.150 0.850 6 C -0.115 4.115 7 C -0.132 4.132 8 C 0.506 3.494 9 O -0.534 6.534 10 N -0.571 5.571 11 C 0.103 3.897 12 C 0.014 3.986 13 H 0.105 0.895 14 C 0.240 3.760 15 N -0.485 5.485 16 C 0.001 3.999 17 C -0.535 4.535 18 H 0.026 0.974 19 C 0.006 3.994 20 N -0.951 5.951 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.225 1.225 25 C 0.518 3.482 26 O -0.521 6.521 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.060 0.940 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -25.362 13.589 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C -0.144 4.144 4 C -0.119 4.119 5 H 0.167 0.833 6 C -0.153 4.153 7 C -0.171 4.171 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.313 5.313 11 C -0.020 4.020 12 C -0.009 4.009 13 H 0.123 0.877 14 C -0.076 4.076 15 N -0.162 5.162 16 C -0.038 4.038 17 C -0.573 4.573 18 H 0.045 0.955 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.148 1.148 25 C 0.310 3.690 26 O -0.395 6.395 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.079 0.921 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.489 -25.150 12.189 28.165 hybrid contribution 0.118 1.656 -0.055 1.661 sum -3.371 -23.494 12.135 26.656 Atomic orbital electron populations 1.21805 0.96264 1.02032 1.01467 1.21546 0.95605 0.94514 1.03717 1.21528 0.91256 0.99037 1.02551 1.21676 0.97927 0.89219 1.03054 0.83258 1.21903 0.91852 1.05236 0.96262 1.22059 0.98753 0.88335 1.07923 1.22101 0.83022 0.90508 0.74556 1.90797 1.24228 1.79462 1.46326 1.46888 1.18863 1.12044 1.53511 1.21830 1.02686 0.79419 0.98048 1.19262 0.98959 0.96953 0.85715 0.87727 1.29348 0.92693 0.91147 0.94453 1.80965 1.10735 1.11868 1.12635 1.19538 0.97586 0.88710 0.97935 1.21285 1.36020 0.92667 1.07279 0.95545 1.26028 0.96122 0.98132 0.98815 1.70076 1.47819 1.06964 1.34225 0.85697 0.78433 0.78050 0.80802 1.19937 1.20986 1.14782 1.21844 0.78976 0.92898 0.75275 1.90742 1.54107 1.54010 1.40617 0.91685 0.93152 0.93576 0.90215 0.89969 0.92875 0.91505 0.84599 0.92068 0.83490 0.86678 0.85287 0.88116 0.91661 0.95247 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -0.90 5.58 30.59 0.17 -0.73 16 3 C -0.11 -1.41 4.38 30.60 0.13 -1.28 16 4 C -0.10 -1.19 2.42 -11.49 -0.03 -1.21 16 5 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 6 C -0.12 -1.09 5.02 30.76 0.15 -0.94 16 7 C -0.13 -1.64 6.07 29.90 0.18 -1.45 16 8 C 0.51 12.55 6.82 87.72 0.60 13.15 16 9 O -0.53 -18.26 14.69 -2.85 -0.04 -18.30 16 10 N -0.57 -14.58 2.46 -757.66 -1.86 -16.45 16 11 C 0.10 3.10 4.58 86.38 0.40 3.49 16 12 C 0.01 0.53 2.42 -12.60 -0.03 0.50 16 13 H 0.10 4.13 8.14 -2.38 -0.02 4.11 16 14 C 0.24 10.78 11.67 89.44 1.04 11.83 16 15 N -0.49 -23.61 18.22 20.01 0.36 -23.25 16 16 C 0.00 0.06 3.49 29.85 0.10 0.16 16 17 C -0.53 -30.62 9.15 25.60 0.23 -30.38 16 18 H 0.03 1.70 7.84 -2.91 -0.02 1.68 16 19 C 0.01 0.36 5.47 84.66 0.46 0.82 16 20 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 21 Si 0.95 43.19 27.47 68.60 1.88 45.07 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.23 -8.90 6.54 99.48 0.65 -8.25 16 25 C 0.52 11.60 7.17 87.71 0.63 12.23 16 26 O -0.52 -15.10 15.39 -2.89 -0.04 -15.14 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.08 0.42 6.96 -2.39 -0.02 0.40 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.12 7.63 -2.39 -0.02 1.10 16 34 H 0.14 0.29 6.96 -2.39 -0.02 0.27 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.13 3.45 7.29 -2.39 -0.02 3.44 16 39 H 0.10 3.03 7.29 -2.39 -0.02 3.02 16 40 H 0.07 2.62 7.20 -2.39 -0.02 2.61 16 41 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 42 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -81.67 345.56 6.32 -75.35 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.96 Total: 7.59 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.76 Total: 5.30 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -1.20 Total: -99.86 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.09 Total: -33.45 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Total: -81.67 6.32 -75.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130056402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.776 kcal (2) G-P(sol) polarization free energy of solvation -81.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds