Wall clock time and date at job start Tue Mar 31 2020 07:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53004 * 109.46997 * 174.85353 * 3 2 1 5 5 H 1.09007 * 109.52272 * 305.72840 * 4 3 2 6 6 C 1.53233 * 109.52489 * 65.86197 * 4 3 2 7 7 C 1.53234 * 108.57610 * 175.44702 * 6 4 3 8 8 C 1.50594 * 109.21070 * 304.48701 * 7 6 4 9 9 O 1.21223 * 119.36121 * 209.06031 * 8 7 6 10 10 N 1.34142 * 121.27802 * 29.04666 * 8 7 6 11 11 C 1.46496 * 118.70206 * 179.49943 * 10 8 7 12 12 C 1.52997 * 109.47084 * 269.97129 * 11 10 8 13 13 H 1.08995 * 109.47601 * 304.99998 * 12 11 10 14 14 C 1.47199 * 109.46791 * 65.00453 * 12 11 10 15 15 N 7.95699 * 153.23612 * 19.82556 * 2 1 3 16 16 C 1.53009 * 109.47277 * 185.00070 * 12 11 10 17 17 C 1.50697 * 109.46974 * 175.00371 * 16 12 11 18 18 H 1.08000 * 120.00113 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99830 * 180.02562 * 17 16 12 20 20 N 1.31516 * 119.99687 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46958 * 90.00173 * 21 19 17 23 23 H 1.48501 * 109.46834 * 210.00201 * 21 19 17 24 24 H 1.48500 * 109.47060 * 330.00055 * 21 19 17 25 25 C 1.34138 * 122.59164 * 359.47293 * 10 8 7 26 26 O 1.21226 * 119.36404 * 180.55219 * 25 10 8 27 27 H 1.08999 * 109.47322 * 299.99822 * 1 2 3 28 28 H 1.08999 * 109.47324 * 60.00522 * 1 2 3 29 29 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47546 * 239.99694 * 2 1 3 31 31 H 1.09008 * 109.47072 * 120.00027 * 2 1 3 32 32 H 1.08991 * 109.47199 * 294.85065 * 3 2 1 33 33 H 1.09000 * 109.47136 * 54.85806 * 3 2 1 34 34 H 1.09004 * 109.62059 * 295.23920 * 6 4 3 35 35 H 1.09003 * 109.62626 * 55.78954 * 6 4 3 36 36 H 1.09000 * 109.52244 * 184.55015 * 7 6 4 37 37 H 1.08995 * 109.47100 * 64.39201 * 7 6 4 38 38 H 1.09003 * 109.47470 * 29.97440 * 11 10 8 39 39 H 1.09004 * 109.47480 * 149.97326 * 11 10 8 40 40 H 1.08999 * 109.46887 * 295.00398 * 16 12 11 41 41 H 1.08991 * 109.46673 * 55.00267 * 16 12 11 42 42 H 0.96999 * 119.99602 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1294 5 1 3.8562 0.8701 1.0088 6 6 4.1855 0.8153 -1.1223 7 6 5.7101 0.9314 -1.0218 8 6 6.0849 2.3760 -0.8207 9 8 7.1545 2.7749 -1.2287 10 7 5.2580 3.2301 -0.1992 11 6 5.6844 4.6207 -0.0244 12 6 6.4305 4.7622 1.3038 13 1 5.8015 4.3953 2.1148 14 6 7.6745 3.9769 1.2538 15 7 8.6345 3.3708 1.2153 16 6 6.7666 6.2352 1.5456 17 6 7.3913 6.3907 2.9082 18 1 7.5347 5.5255 3.5385 19 6 7.7799 7.6376 3.3502 20 7 8.3246 7.7734 4.5395 21 14 7.5325 9.1340 2.2597 22 1 6.1984 9.7278 2.5293 23 1 8.5886 10.1372 2.5490 24 1 7.6140 8.7265 0.8341 25 6 4.0560 2.8612 0.2679 26 8 3.3514 3.6842 0.8117 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7539 1.9290 -0.9324 33 1 1.6034 1.9822 0.8403 34 1 3.9007 -0.2350 -1.1837 35 1 3.8369 1.3443 -2.0093 36 1 6.1649 0.5616 -1.9407 37 1 6.0644 0.3421 -0.1761 38 1 6.3447 4.9042 -0.8440 39 1 4.8098 5.2713 -0.0209 40 1 7.4666 6.5779 0.7837 41 1 5.8542 6.8291 1.4943 42 1 8.5983 8.6505 4.8503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130056781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:46 Heat of formation + Delta-G solvation = -67.283218 kcal Electronic energy + Delta-G solvation = -23752.037100 eV Core-core repulsion = 20310.537609 eV Total energy + Delta-G solvation = -3441.499491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84876 -38.94174 -37.27065 -36.32201 -35.14436 -34.03877 -33.26875 -31.72054 -29.92015 -27.84930 -25.62787 -24.77310 -23.12227 -22.89677 -21.51554 -21.10175 -18.60276 -17.67487 -17.28711 -16.82703 -16.67096 -15.86959 -15.61895 -15.05050 -14.63365 -14.55025 -14.48643 -14.10274 -13.58954 -13.39661 -13.32389 -13.18796 -12.84554 -12.47608 -12.34843 -12.29755 -12.00359 -11.95928 -11.54958 -11.38023 -11.36738 -11.22611 -11.18932 -10.91729 -10.83754 -10.53864 -10.42446 -10.12332 -9.96832 -9.87335 -9.45367 -9.27744 -8.59827 -6.09142 -4.09884 1.53791 2.48495 2.76794 3.28737 3.36920 3.38482 3.63952 3.66880 3.77360 4.17855 4.23495 4.33681 4.40404 4.66346 4.69581 4.72262 4.81434 4.91629 5.03432 5.25289 5.26300 5.29275 5.32975 5.33785 5.40156 5.41850 5.50940 5.54848 5.59025 5.64419 5.79402 5.82407 5.90703 6.02289 6.19774 6.24914 6.91592 6.96726 7.12273 7.46403 7.62901 7.77253 8.40111 8.46651 8.93215 9.50306 11.03949 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.004080 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.412795 B = 6861.410932 C = 7601.475189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.111 4.111 5 H 0.115 0.885 6 C -0.119 4.119 7 C -0.142 4.142 8 C 0.513 3.487 9 O -0.485 6.485 10 N -0.567 5.567 11 C 0.096 3.904 12 C 0.008 3.992 13 H 0.108 0.892 14 C 0.232 3.768 15 N -0.450 5.450 16 C -0.002 4.002 17 C -0.527 4.527 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.522 3.478 26 O -0.488 6.488 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.028 0.972 41 H 0.037 0.963 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.106 -16.311 -13.308 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.132 4.132 5 H 0.133 0.867 6 C -0.157 4.157 7 C -0.182 4.182 8 C 0.302 3.698 9 O -0.356 6.356 10 N -0.310 5.310 11 C -0.025 4.025 12 C -0.015 4.015 13 H 0.126 0.874 14 C -0.086 4.086 15 N -0.126 5.126 16 C -0.041 4.041 17 C -0.565 4.565 18 H 0.091 0.909 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.188 1.188 25 C 0.311 3.689 26 O -0.360 6.360 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.380 -16.457 -13.177 25.520 hybrid contribution -0.252 1.168 -0.236 1.218 sum -14.632 -15.289 -13.413 25.055 Atomic orbital electron populations 1.21767 0.95596 1.01619 1.02116 1.21570 0.96184 0.96150 1.02262 1.21529 0.91243 0.97644 1.03886 1.21575 0.98210 0.92250 1.01143 0.86706 1.21848 0.93096 1.03188 0.97521 1.21942 0.97739 0.92244 1.06258 1.20980 0.83839 0.88683 0.76319 1.90811 1.21379 1.77991 1.45432 1.46720 1.17860 1.13325 1.53045 1.22052 1.01333 0.80344 0.98807 1.19244 0.87331 0.97707 0.97205 0.87410 1.28807 0.94655 0.92645 0.92486 1.80992 1.11004 1.11486 1.09142 1.19606 0.97853 0.87600 0.98997 1.20969 1.40699 0.95465 0.99345 0.90875 1.24977 0.94286 0.98914 0.94876 1.69905 1.41307 1.24022 1.18241 0.86812 0.78239 0.82822 0.81712 1.19904 1.21263 1.18774 1.20869 0.80072 0.91217 0.76779 1.90752 1.54127 1.52640 1.38437 0.92486 0.92698 0.92746 0.91718 0.91668 0.91306 0.89866 0.88741 0.90312 0.87002 0.87337 0.88144 0.86861 0.95404 0.94492 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.64 5.59 -26.73 -0.15 -0.79 16 3 C -0.11 -0.74 4.39 -26.73 -0.12 -0.85 16 4 C -0.11 -0.85 2.42 -91.70 -0.22 -1.07 16 5 H 0.12 0.77 8.14 -51.92 -0.42 0.35 16 6 C -0.12 -0.68 5.02 -26.49 -0.13 -0.81 16 7 C -0.14 -1.14 6.07 -27.81 -0.17 -1.30 16 8 C 0.51 6.76 6.80 -11.32 -0.08 6.68 16 9 O -0.49 -8.40 14.77 5.61 0.08 -8.32 16 10 N -0.57 -7.62 2.46 -115.78 -0.28 -7.90 16 11 C 0.10 1.50 4.59 -4.05 -0.02 1.48 16 12 C 0.01 0.15 2.42 -93.40 -0.23 -0.08 16 13 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 14 C 0.23 5.07 11.69 -20.76 -0.24 4.82 16 15 N -0.45 -10.63 18.26 42.15 0.77 -9.86 16 16 C 0.00 -0.04 3.49 -27.88 -0.10 -0.13 16 17 C -0.53 -14.70 9.15 -34.44 -0.32 -15.01 16 18 H 0.07 2.24 7.84 -52.49 -0.41 1.82 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 21 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 25 C 0.52 6.28 7.17 -11.32 -0.08 6.20 16 26 O -0.49 -7.28 15.37 5.60 0.09 -7.19 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.27 6.96 -51.93 -0.36 -0.10 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.72 7.62 -51.93 -0.40 0.32 16 34 H 0.09 0.32 6.97 -51.93 -0.36 -0.05 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.57 7.28 -51.93 -0.38 1.19 16 39 H 0.11 1.61 7.28 -51.93 -0.38 1.24 16 40 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 41 H 0.04 0.78 7.57 -51.93 -0.39 0.38 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -35.28 345.66 -6.06 -41.34 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -6.45 Total: -3.58 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.58 Total: 0.63 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 1.26 Total: -44.58 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.17 Total: -15.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.28 -6.06 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130056781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.944 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds