Wall clock time and date at job start Tue Mar 31 2020 07:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53004 * 109.46997 * 174.85353 * 3 2 1 5 5 H 1.09007 * 109.52272 * 305.72840 * 4 3 2 6 6 C 1.53233 * 109.52489 * 65.86197 * 4 3 2 7 7 C 1.53234 * 108.57610 * 175.44702 * 6 4 3 8 8 C 1.50594 * 109.21070 * 304.48701 * 7 6 4 9 9 O 1.21223 * 119.36121 * 209.06031 * 8 7 6 10 10 N 1.34142 * 121.27802 * 29.04666 * 8 7 6 11 11 C 1.46496 * 118.70206 * 179.49943 * 10 8 7 12 12 C 1.52997 * 109.47084 * 269.97129 * 11 10 8 13 13 H 1.08995 * 109.47601 * 304.99998 * 12 11 10 14 14 C 1.47199 * 109.46791 * 65.00453 * 12 11 10 15 15 N 7.95699 * 153.23612 * 19.82556 * 2 1 3 16 16 C 1.53009 * 109.47277 * 185.00070 * 12 11 10 17 17 C 1.50697 * 109.46974 * 175.00371 * 16 12 11 18 18 H 1.08000 * 120.00113 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99830 * 180.02562 * 17 16 12 20 20 N 1.31516 * 119.99687 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46958 * 90.00173 * 21 19 17 23 23 H 1.48501 * 109.46834 * 210.00201 * 21 19 17 24 24 H 1.48500 * 109.47060 * 330.00055 * 21 19 17 25 25 C 1.34138 * 122.59164 * 359.47293 * 10 8 7 26 26 O 1.21226 * 119.36404 * 180.55219 * 25 10 8 27 27 H 1.08999 * 109.47322 * 299.99822 * 1 2 3 28 28 H 1.08999 * 109.47324 * 60.00522 * 1 2 3 29 29 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47546 * 239.99694 * 2 1 3 31 31 H 1.09008 * 109.47072 * 120.00027 * 2 1 3 32 32 H 1.08991 * 109.47199 * 294.85065 * 3 2 1 33 33 H 1.09000 * 109.47136 * 54.85806 * 3 2 1 34 34 H 1.09004 * 109.62059 * 295.23920 * 6 4 3 35 35 H 1.09003 * 109.62626 * 55.78954 * 6 4 3 36 36 H 1.09000 * 109.52244 * 184.55015 * 7 6 4 37 37 H 1.08995 * 109.47100 * 64.39201 * 7 6 4 38 38 H 1.09003 * 109.47470 * 29.97440 * 11 10 8 39 39 H 1.09004 * 109.47480 * 149.97326 * 11 10 8 40 40 H 1.08999 * 109.46887 * 295.00398 * 16 12 11 41 41 H 1.08991 * 109.46673 * 55.00267 * 16 12 11 42 42 H 0.96999 * 119.99602 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 0.1294 5 1 3.8562 0.8701 1.0088 6 6 4.1855 0.8153 -1.1223 7 6 5.7101 0.9314 -1.0218 8 6 6.0849 2.3760 -0.8207 9 8 7.1545 2.7749 -1.2287 10 7 5.2580 3.2301 -0.1992 11 6 5.6844 4.6207 -0.0244 12 6 6.4305 4.7622 1.3038 13 1 5.8015 4.3953 2.1148 14 6 7.6745 3.9769 1.2538 15 7 8.6345 3.3708 1.2153 16 6 6.7666 6.2352 1.5456 17 6 7.3913 6.3907 2.9082 18 1 7.5347 5.5255 3.5385 19 6 7.7799 7.6376 3.3502 20 7 8.3246 7.7734 4.5395 21 14 7.5325 9.1340 2.2597 22 1 6.1984 9.7278 2.5293 23 1 8.5886 10.1372 2.5490 24 1 7.6140 8.7265 0.8341 25 6 4.0560 2.8612 0.2679 26 8 3.3514 3.6842 0.8117 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.7539 1.9290 -0.9324 33 1 1.6034 1.9822 0.8403 34 1 3.9007 -0.2350 -1.1837 35 1 3.8369 1.3443 -2.0093 36 1 6.1649 0.5616 -1.9407 37 1 6.0644 0.3421 -0.1761 38 1 6.3447 4.9042 -0.8440 39 1 4.8098 5.2713 -0.0209 40 1 7.4666 6.5779 0.7837 41 1 5.8542 6.8291 1.4943 42 1 8.5983 8.6505 4.8503 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130056781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:45 Heat of formation + Delta-G solvation = -90.029420 kcal Electronic energy + Delta-G solvation = -23753.023449 eV Core-core repulsion = 20310.537609 eV Total energy + Delta-G solvation = -3442.485840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.83480 -39.98521 -38.54836 -37.34939 -36.39223 -35.54722 -34.49353 -33.38786 -30.53651 -29.52937 -26.33435 -26.09612 -24.00850 -23.74484 -23.41551 -21.64582 -19.50435 -19.01078 -18.85600 -18.16086 -17.99667 -17.06805 -16.45908 -16.17479 -15.83066 -15.46878 -15.34461 -15.25500 -15.07978 -14.86296 -14.41707 -14.08511 -13.92382 -13.89731 -13.63588 -13.55308 -13.19067 -12.96304 -12.84202 -12.60491 -12.53595 -12.22620 -12.17991 -11.92461 -11.82599 -11.75358 -11.69448 -11.48933 -11.33570 -11.14134 -10.95207 -10.78199 -10.70304 -8.30278 -6.36819 0.56664 1.39128 1.41599 1.49595 1.52497 1.76933 1.86526 1.95857 2.36683 2.95805 3.04173 3.10743 3.57434 3.62962 3.73833 3.87853 4.01965 4.18200 4.24233 4.27145 4.37700 4.38675 4.46696 4.53153 4.58523 4.73077 4.81355 4.84327 4.92480 4.96870 5.08451 5.10391 5.17661 5.21335 5.29091 5.38868 5.48811 5.55311 5.59772 5.98799 6.17887 6.50414 6.66402 6.71428 6.77872 7.27412 8.86621 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.004080 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.412795 B = 6861.410932 C = 7601.475189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.105 4.105 5 H 0.130 0.870 6 C -0.107 4.107 7 C -0.135 4.135 8 C 0.507 3.493 9 O -0.533 6.533 10 N -0.571 5.571 11 C 0.103 3.897 12 C 0.014 3.986 13 H 0.107 0.893 14 C 0.240 3.760 15 N -0.485 5.485 16 C 0.001 3.999 17 C -0.534 4.534 18 H 0.027 0.973 19 C 0.006 3.994 20 N -0.951 5.951 21 Si 0.949 3.051 22 H -0.255 1.255 23 H -0.290 1.290 24 H -0.239 1.239 25 C 0.519 3.481 26 O -0.521 6.521 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.054 -17.461 -15.727 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.126 4.126 5 H 0.148 0.852 6 C -0.144 4.144 7 C -0.174 4.174 8 C 0.299 3.701 9 O -0.408 6.408 10 N -0.313 5.313 11 C -0.020 4.020 12 C -0.009 4.009 13 H 0.125 0.875 14 C -0.076 4.076 15 N -0.162 5.162 16 C -0.038 4.038 17 C -0.572 4.572 18 H 0.046 0.954 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.180 1.180 23 H -0.216 1.216 24 H -0.162 1.162 25 C 0.311 3.689 26 O -0.395 6.395 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.364 -17.652 -15.612 28.690 hybrid contribution 0.354 1.464 0.613 1.626 sum -16.010 -16.188 -14.999 27.264 Atomic orbital electron populations 1.21791 0.95995 1.01993 1.01630 1.21561 0.95806 0.94783 1.03508 1.21491 0.90519 0.98849 1.03003 1.21708 0.98610 0.89214 1.03048 0.85222 1.21888 0.90871 1.05298 0.96393 1.22066 0.99627 0.88160 1.07567 1.22073 0.82845 0.90458 0.74736 1.90792 1.23389 1.79098 1.47485 1.46869 1.18600 1.12539 1.53259 1.21820 1.01385 0.82641 0.96145 1.19263 0.86565 0.95411 0.99655 0.87509 1.29343 0.94804 0.92169 0.91324 1.80971 1.12045 1.12588 1.10558 1.19533 0.98449 0.90115 0.95682 1.21283 1.40669 0.94066 1.01204 0.95439 1.26027 0.93912 1.02801 0.96383 1.70077 1.43249 1.25038 1.20718 0.85683 0.78746 0.77932 0.80548 1.17958 1.21634 1.16235 1.21791 0.78983 0.92799 0.75339 1.90737 1.54814 1.54056 1.39850 0.93552 0.92710 0.91928 0.89645 0.91160 0.91239 0.92084 0.84963 0.89652 0.85325 0.86049 0.88235 0.85318 0.95137 0.91866 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.12 -0.83 5.59 30.59 0.17 -0.66 16 3 C -0.10 -1.16 4.39 30.60 0.13 -1.03 16 4 C -0.11 -1.31 2.42 -11.49 -0.03 -1.34 16 5 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 6 C -0.11 -0.76 5.02 30.75 0.15 -0.61 16 7 C -0.14 -1.72 6.07 29.89 0.18 -1.54 16 8 C 0.51 12.65 6.80 87.72 0.60 13.24 16 9 O -0.53 -18.26 14.77 -2.85 -0.04 -18.30 16 10 N -0.57 -14.64 2.46 -757.76 -1.86 -16.50 16 11 C 0.10 3.10 4.59 86.38 0.40 3.50 16 12 C 0.01 0.52 2.42 -12.60 -0.03 0.49 16 13 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 14 C 0.24 10.69 11.69 89.44 1.05 11.74 16 15 N -0.48 -23.39 18.26 20.01 0.37 -23.02 16 16 C 0.00 0.05 3.49 29.85 0.10 0.16 16 17 C -0.53 -30.48 9.15 25.60 0.23 -30.25 16 18 H 0.03 1.76 7.84 -2.91 -0.02 1.74 16 19 C 0.01 0.34 5.47 84.66 0.46 0.81 16 20 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 21 Si 0.95 43.16 27.47 68.60 1.88 45.05 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 25 C 0.52 11.71 7.17 87.72 0.63 12.34 16 26 O -0.52 -15.12 15.37 -2.86 -0.04 -15.17 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.28 6.96 -2.39 -0.02 0.26 16 31 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.99 7.62 -2.39 -0.02 0.98 16 34 H 0.13 0.08 6.97 -2.38 -0.02 0.06 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 3.04 7.28 -2.39 -0.02 3.02 16 39 H 0.13 3.47 7.28 -2.38 -0.02 3.45 16 40 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 41 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 42 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -80.63 345.66 6.32 -74.30 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.96 Total: 7.44 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 4.76 Total: 6.22 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -1.20 Total: -99.54 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.09 Total: -33.47 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -80.63 6.32 -74.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130056781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.727 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds