Wall clock time and date at job start Tue Mar 31 2020 07:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.52996 * 109.47179 * 120.00223 * 2 1 3 5 5 H 1.09001 * 109.47593 * 60.00400 * 4 2 1 6 6 O 1.42897 * 109.47161 * 299.99842 * 4 2 1 7 7 C 1.53004 * 109.47179 * 179.97438 * 4 2 1 8 8 N 1.46495 * 109.47610 * 184.99844 * 7 4 2 9 9 C 1.34769 * 120.00599 * 179.97438 * 8 7 4 10 10 O 1.21586 * 119.99865 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00379 * 180.02562 * 9 8 7 12 12 C 1.39241 * 120.00169 * 176.69615 * 11 9 8 13 13 C 1.39484 * 119.83423 * 217.52166 * 12 11 9 14 14 C 1.36377 * 120.16633 * 179.75521 * 13 12 11 15 15 C 1.40864 * 119.83082 * 0.54101 * 14 13 12 16 16 C 1.41156 * 120.16627 * 179.69248 * 15 14 13 17 17 H 1.08003 * 120.00056 * 157.94120 * 16 15 14 18 18 C 1.39890 * 119.99866 * 337.94487 * 16 15 14 19 19 N 1.30881 * 120.00074 * 327.61405 * 18 16 15 20 20 Si 1.86797 * 120.00096 * 147.61578 * 18 16 15 21 21 H 1.48502 * 109.47152 * 94.98295 * 20 18 16 22 22 H 1.48505 * 109.47247 * 214.98574 * 20 18 16 23 23 H 1.48499 * 109.47394 * 334.98513 * 20 18 16 24 24 C 1.40876 * 119.67206 * 359.71320 * 15 14 13 25 25 C 1.36369 * 119.82735 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.46715 * 299.99543 * 1 2 3 27 27 H 1.08998 * 109.47256 * 60.00243 * 1 2 3 28 28 H 1.09001 * 109.46531 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47288 * 240.00285 * 2 1 3 30 30 H 1.08994 * 109.47185 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46875 * 299.99990 * 3 2 1 32 32 H 1.08997 * 109.46885 * 60.00068 * 3 2 1 33 33 H 0.96703 * 114.00000 * 300.00147 * 6 4 2 34 34 H 1.09003 * 109.47105 * 305.00072 * 7 4 2 35 35 H 1.08998 * 109.47178 * 64.99512 * 7 4 2 36 36 H 0.97006 * 119.99550 * 0.02562 * 8 7 4 37 37 H 0.96999 * 120.00091 * 356.69546 * 11 9 8 38 38 H 1.07998 * 119.91724 * 359.97438 * 13 12 11 39 39 H 1.08007 * 120.08345 * 180.25118 * 14 13 12 40 40 H 0.97003 * 120.00233 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.08420 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.91651 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -1.7490 1.2492 6 8 1.5638 -0.0477 2.4160 7 6 3.5701 -0.7218 1.2489 8 7 4.0585 -1.5140 2.3802 9 6 5.3835 -1.6562 2.5814 10 8 6.1736 -1.1265 1.8241 11 7 5.8327 -2.3854 3.6219 12 6 7.1997 -2.5896 3.7904 13 6 7.6658 -3.8204 4.2525 14 6 9.0036 -4.0294 4.4152 15 6 9.9147 -2.9946 4.1263 16 6 11.3004 -3.2011 4.2985 17 1 12.0087 -2.5837 3.7658 18 6 11.7564 -4.2054 5.1589 19 7 11.0665 -4.5149 6.2272 20 14 13.3499 -5.1048 4.7832 21 1 14.4676 -4.4595 5.5178 22 1 13.2306 -6.5224 5.2093 23 1 13.6184 -5.0476 3.3238 24 6 9.4360 -1.7525 3.6652 25 6 8.0958 -1.5602 3.5023 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8491 0.8739 2.4821 34 1 3.9331 -1.1564 0.3174 35 1 3.9338 0.3018 1.3381 36 1 3.4281 -1.9369 2.9842 37 1 5.2038 -2.7681 4.2535 38 1 6.9657 -4.6111 4.4785 39 1 9.3633 -4.9843 4.7692 40 1 11.3828 -5.2111 6.8240 41 1 10.1286 -0.9544 3.4421 42 1 7.7273 -0.6087 3.1484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133726944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:48 Heat of formation + Delta-G solvation = -73.624166 kcal Electronic energy + Delta-G solvation = -22605.608027 eV Core-core repulsion = 19163.833572 eV Total energy + Delta-G solvation = -3441.774455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.97773 -38.84784 -37.28649 -34.53415 -34.14257 -34.00943 -32.91776 -29.59354 -29.28184 -28.21306 -27.55646 -24.92542 -23.39039 -21.57410 -20.84618 -20.53064 -19.89157 -18.00407 -17.25517 -17.16562 -16.42632 -16.16042 -15.26524 -15.11626 -14.87523 -14.68177 -14.05878 -13.85060 -13.75446 -13.26361 -13.01806 -12.66926 -12.54689 -12.44156 -12.28543 -12.03094 -11.94914 -11.61905 -11.36975 -11.25628 -11.11798 -10.92936 -10.90556 -10.49035 -10.25492 -10.13994 -9.68717 -9.55007 -9.09792 -8.88359 -8.63232 -7.49186 -7.07852 -6.82579 -4.21758 2.70451 3.02905 3.07349 3.10198 3.15520 3.23902 3.75017 3.92768 4.08272 4.35417 4.43806 4.55250 4.55981 4.78237 4.87932 5.05832 5.23333 5.30088 5.48939 5.50115 5.63239 5.67483 5.70999 5.73355 5.93983 5.98921 6.23957 6.46825 6.63667 6.83022 6.91137 7.05375 7.15744 7.29592 7.33391 7.37708 7.64519 7.93231 8.01362 8.08409 8.31744 8.56305 8.60920 8.89318 8.96684 9.18846 10.07076 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.050881 B = 0.002512 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.171503 B =11142.757695 C =11374.812009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.159 4.159 4 C 0.100 3.900 5 H 0.104 0.896 6 O -0.557 6.557 7 C 0.109 3.891 8 N -0.749 5.749 9 C 0.693 3.307 10 O -0.583 6.583 11 N -0.665 5.665 12 C -0.001 4.001 13 C -0.105 4.105 14 C -0.171 4.171 15 C 0.111 3.889 16 C -0.467 4.467 17 H 0.081 0.919 18 C 0.088 3.912 19 N -0.771 5.771 20 Si 0.895 3.105 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.223 4.223 25 C -0.066 4.066 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.375 0.625 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.395 0.605 37 H 0.390 0.610 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.282 0.718 41 H 0.094 0.906 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.833 5.121 -6.909 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.216 4.216 4 C 0.040 3.960 5 H 0.122 0.878 6 O -0.363 6.363 7 C -0.016 4.016 8 N -0.407 5.407 9 C 0.394 3.606 10 O -0.460 6.460 11 N -0.311 5.311 12 C -0.093 4.093 13 C -0.125 4.125 14 C -0.191 4.191 15 C 0.108 3.892 16 C -0.495 4.495 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.395 5.395 20 Si 0.718 3.282 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.243 4.243 25 C -0.087 4.087 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.229 0.771 37 H 0.223 0.777 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.389 4.903 -7.291 19.482 hybrid contribution 0.363 -0.391 0.369 0.649 sum -17.026 4.512 -6.922 18.925 Atomic orbital electron populations 1.21746 0.94209 1.01978 1.02013 1.21729 0.97016 0.97202 0.98535 1.21951 1.01754 0.95607 1.02266 1.22219 0.91529 0.97066 0.85161 0.87795 1.86567 1.76761 1.29402 1.43569 1.21881 0.93514 0.96410 0.89842 1.44983 1.05620 1.57610 1.32441 1.16036 0.82004 0.80726 0.81826 1.90903 1.54371 1.52491 1.48274 1.42048 1.07189 1.55100 1.26776 1.16863 0.80215 0.95640 1.16598 1.20157 0.95819 0.93732 1.02795 1.20604 0.91440 0.99320 1.07700 1.17586 0.93195 0.90085 0.88295 1.19477 0.92486 1.14869 1.22681 0.90086 1.25925 0.98738 0.95764 0.92891 1.69956 1.38424 1.24113 1.06964 0.86528 0.81876 0.79089 0.80666 1.19518 1.19940 1.18135 1.20600 0.93860 0.97297 1.12558 1.20323 0.93067 0.96706 0.98555 0.91947 0.92721 0.92698 0.89992 0.91753 0.92084 0.92430 0.77668 0.91045 0.91336 0.77107 0.77676 0.89353 0.87507 0.90691 0.88804 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.05 37.16 0.34 -0.56 16 2 C -0.13 -0.84 2.81 -90.62 -0.25 -1.09 16 3 C -0.16 -1.00 8.54 37.16 0.32 -0.68 16 4 C 0.10 0.79 2.80 -26.73 -0.07 0.72 16 5 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 6 O -0.56 -4.71 12.57 -35.23 -0.44 -5.15 16 7 C 0.11 1.18 4.81 -4.04 -0.02 1.16 16 8 N -0.75 -9.76 5.51 -65.23 -0.36 -10.12 16 9 C 0.69 12.74 8.37 -86.93 -0.73 12.01 16 10 O -0.58 -13.19 13.96 5.29 0.07 -13.12 16 11 N -0.67 -12.31 5.30 -14.10 -0.07 -12.38 16 12 C 0.00 -0.02 6.25 -83.57 -0.52 -0.54 16 13 C -0.10 -2.45 9.90 -39.79 -0.39 -2.85 16 14 C -0.17 -4.45 8.74 -39.26 -0.34 -4.80 16 15 C 0.11 3.03 5.57 -106.80 -0.60 2.44 16 16 C -0.47 -12.56 8.94 -37.86 -0.34 -12.90 16 17 H 0.08 2.11 8.02 -52.48 -0.42 1.69 16 18 C 0.09 2.21 4.77 -17.34 -0.08 2.13 16 19 N -0.77 -19.74 11.78 55.54 0.65 -19.09 16 20 Si 0.89 18.47 29.66 -169.99 -5.04 13.43 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 24 C -0.22 -5.84 9.74 -39.26 -0.38 -6.22 16 25 C -0.07 -1.66 8.59 -39.79 -0.34 -2.00 16 26 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.32 6.78 -51.93 -0.35 -0.03 16 33 H 0.37 2.40 7.33 45.56 0.33 2.74 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.79 6.71 -51.93 -0.35 0.44 16 36 H 0.40 4.21 8.49 -40.82 -0.35 3.86 16 37 H 0.39 5.78 8.84 -40.82 -0.36 5.42 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.11 2.81 6.53 -52.48 -0.34 2.47 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.10 2.55 6.44 -52.49 -0.34 2.21 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -31.62 345.61 -8.84 -40.45 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.43 Total: 13.93 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -3.42 Total: -13.17 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.22 Total: -41.59 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.37 Total: -18.27 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.62 -8.84 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133726944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.169 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds