Wall clock time and date at job start Tue Mar 31 2020 07:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.52996 * 109.47179 * 120.00223 * 2 1 3 5 5 H 1.09001 * 109.47593 * 60.00400 * 4 2 1 6 6 O 1.42897 * 109.47161 * 299.99842 * 4 2 1 7 7 C 1.53004 * 109.47179 * 179.97438 * 4 2 1 8 8 N 1.46495 * 109.47610 * 184.99844 * 7 4 2 9 9 C 1.34769 * 120.00599 * 179.97438 * 8 7 4 10 10 O 1.21586 * 119.99865 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00379 * 180.02562 * 9 8 7 12 12 C 1.39241 * 120.00169 * 176.69615 * 11 9 8 13 13 C 1.39484 * 119.83423 * 217.52166 * 12 11 9 14 14 C 1.36377 * 120.16633 * 179.75521 * 13 12 11 15 15 C 1.40864 * 119.83082 * 0.54101 * 14 13 12 16 16 C 1.41156 * 120.16627 * 179.69248 * 15 14 13 17 17 H 1.08003 * 120.00056 * 157.94120 * 16 15 14 18 18 C 1.39890 * 119.99866 * 337.94487 * 16 15 14 19 19 N 1.30881 * 120.00074 * 327.61405 * 18 16 15 20 20 Si 1.86797 * 120.00096 * 147.61578 * 18 16 15 21 21 H 1.48502 * 109.47152 * 94.98295 * 20 18 16 22 22 H 1.48505 * 109.47247 * 214.98574 * 20 18 16 23 23 H 1.48499 * 109.47394 * 334.98513 * 20 18 16 24 24 C 1.40876 * 119.67206 * 359.71320 * 15 14 13 25 25 C 1.36369 * 119.82735 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.46715 * 299.99543 * 1 2 3 27 27 H 1.08998 * 109.47256 * 60.00243 * 1 2 3 28 28 H 1.09001 * 109.46531 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47288 * 240.00285 * 2 1 3 30 30 H 1.08994 * 109.47185 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46875 * 299.99990 * 3 2 1 32 32 H 1.08997 * 109.46885 * 60.00068 * 3 2 1 33 33 H 0.96703 * 114.00000 * 300.00147 * 6 4 2 34 34 H 1.09003 * 109.47105 * 305.00072 * 7 4 2 35 35 H 1.08998 * 109.47178 * 64.99512 * 7 4 2 36 36 H 0.97006 * 119.99550 * 0.02562 * 8 7 4 37 37 H 0.96999 * 120.00091 * 356.69546 * 11 9 8 38 38 H 1.07998 * 119.91724 * 359.97438 * 13 12 11 39 39 H 1.08007 * 120.08345 * 180.25118 * 14 13 12 40 40 H 0.97003 * 120.00233 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.08420 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.91651 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -1.7490 1.2492 6 8 1.5638 -0.0477 2.4160 7 6 3.5701 -0.7218 1.2489 8 7 4.0585 -1.5140 2.3802 9 6 5.3835 -1.6562 2.5814 10 8 6.1736 -1.1265 1.8241 11 7 5.8327 -2.3854 3.6219 12 6 7.1997 -2.5896 3.7904 13 6 7.6658 -3.8204 4.2525 14 6 9.0036 -4.0294 4.4152 15 6 9.9147 -2.9946 4.1263 16 6 11.3004 -3.2011 4.2985 17 1 12.0087 -2.5837 3.7658 18 6 11.7564 -4.2054 5.1589 19 7 11.0665 -4.5149 6.2272 20 14 13.3499 -5.1048 4.7832 21 1 14.4676 -4.4595 5.5178 22 1 13.2306 -6.5224 5.2093 23 1 13.6184 -5.0476 3.3238 24 6 9.4360 -1.7525 3.6652 25 6 8.0958 -1.5602 3.5023 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.8491 0.8739 2.4821 34 1 3.9331 -1.1564 0.3174 35 1 3.9338 0.3018 1.3381 36 1 3.4281 -1.9369 2.9842 37 1 5.2038 -2.7681 4.2535 38 1 6.9657 -4.6111 4.4785 39 1 9.3633 -4.9843 4.7692 40 1 11.3828 -5.2111 6.8240 41 1 10.1286 -0.9544 3.4421 42 1 7.7273 -0.6087 3.1484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133726944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:47 Heat of formation + Delta-G solvation = -95.937133 kcal Electronic energy + Delta-G solvation = -22606.575590 eV Core-core repulsion = 19163.833572 eV Total energy + Delta-G solvation = -3442.742018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.40062 -39.79331 -38.98912 -36.22602 -35.36535 -34.72668 -34.67041 -31.47135 -30.98966 -29.38400 -28.07860 -26.67333 -24.40823 -23.30460 -22.55852 -21.77865 -20.94413 -19.49027 -19.10091 -18.40592 -17.46192 -17.07770 -16.96936 -16.27207 -16.14525 -15.83941 -15.71003 -15.06071 -14.86531 -14.67131 -14.45877 -13.96657 -13.83302 -13.71546 -13.51618 -13.23259 -13.00281 -12.84766 -12.81894 -12.66743 -12.31942 -12.19591 -11.92637 -11.76463 -11.57349 -11.53711 -11.30293 -10.98730 -10.81906 -10.50433 -10.07874 -9.46306 -8.96554 -8.69404 -6.20982 0.88068 1.15051 1.38593 1.45692 1.56833 1.80015 2.19317 2.22827 2.67690 3.31883 3.53721 3.65963 3.72771 3.91131 3.98230 4.22168 4.39717 4.40250 4.50608 4.65097 4.70666 4.81475 4.90572 4.93375 5.01632 5.07071 5.11641 5.17356 5.21300 5.29115 5.39866 5.46663 5.47270 5.51848 5.64029 5.78943 6.04433 6.13048 6.23818 6.38649 6.64019 6.73478 6.90992 7.01817 7.18346 7.69398 8.22468 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.050881 B = 0.002512 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.171503 B =11142.757695 C =11374.812009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C -0.159 4.159 4 C 0.113 3.887 5 H 0.111 0.889 6 O -0.564 6.564 7 C 0.106 3.894 8 N -0.726 5.726 9 C 0.691 3.309 10 O -0.628 6.628 11 N -0.659 5.659 12 C 0.013 3.987 13 C -0.102 4.102 14 C -0.189 4.189 15 C 0.082 3.918 16 C -0.506 4.506 17 H 0.074 0.926 18 C 0.051 3.949 19 N -0.799 5.799 20 Si 0.972 3.028 21 H -0.260 1.260 22 H -0.260 1.260 23 H -0.262 1.262 24 C -0.244 4.244 25 C -0.077 4.077 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.384 0.616 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.411 0.589 37 H 0.411 0.589 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.294 0.706 41 H 0.091 0.909 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.453 4.277 -6.939 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.141 4.141 3 C -0.216 4.216 4 C 0.054 3.946 5 H 0.129 0.871 6 O -0.372 6.372 7 C -0.018 4.018 8 N -0.383 5.383 9 C 0.392 3.608 10 O -0.508 6.508 11 N -0.306 5.306 12 C -0.081 4.081 13 C -0.122 4.122 14 C -0.209 4.209 15 C 0.079 3.921 16 C -0.534 4.534 17 H 0.092 0.908 18 C -0.168 4.168 19 N -0.423 5.423 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.185 1.185 23 H -0.186 1.186 24 C -0.264 4.264 25 C -0.097 4.097 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.248 0.752 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.097 4.066 -7.297 20.844 hybrid contribution 0.705 -0.042 0.366 0.795 sum -18.392 4.024 -6.931 20.063 Atomic orbital electron populations 1.21715 0.93547 1.02147 1.02211 1.21701 0.97403 0.97173 0.97829 1.21953 1.00974 0.95637 1.03039 1.22124 0.89022 0.97721 0.85773 0.87102 1.86553 1.76687 1.30243 1.43699 1.22083 0.95649 0.95566 0.88530 1.44821 1.03803 1.56816 1.32865 1.16219 0.83299 0.80106 0.81226 1.90881 1.56057 1.54170 1.49741 1.41834 1.05796 1.55363 1.27655 1.16895 0.82116 0.94789 1.14329 1.20422 0.95484 0.94654 1.01645 1.20642 0.92575 0.98820 1.08824 1.17903 0.94046 0.90791 0.89320 1.19680 0.92547 1.16923 1.24216 0.90780 1.26722 1.02408 0.95667 0.91992 1.69948 1.40255 1.24588 1.07497 0.85372 0.77306 0.78139 0.80010 1.18418 1.18452 1.18618 1.20725 0.94663 0.97334 1.13716 1.20412 0.93024 0.97310 0.98952 0.92296 0.91984 0.92557 0.89776 0.92929 0.91490 0.91579 0.76631 0.91837 0.91858 0.75248 0.75200 0.85911 0.88268 0.89511 0.89045 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.05 71.98 0.65 -0.78 16 2 C -0.12 -1.38 2.81 -10.79 -0.03 -1.41 16 3 C -0.16 -1.76 8.54 71.98 0.61 -1.14 16 4 C 0.11 1.55 2.80 30.59 0.09 1.64 16 5 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 6 O -0.56 -8.17 12.57 -148.98 -1.87 -10.04 16 7 C 0.11 2.16 4.81 86.38 0.42 2.58 16 8 N -0.73 -17.50 5.51 -478.55 -2.64 -20.13 16 9 C 0.69 24.55 8.37 179.06 1.50 26.05 16 10 O -0.63 -28.38 13.96 -3.99 -0.06 -28.44 16 11 N -0.66 -23.25 5.30 -316.78 -1.68 -24.93 16 12 C 0.01 0.57 6.25 38.57 0.24 0.81 16 13 C -0.10 -4.68 9.90 22.14 0.22 -4.46 16 14 C -0.19 -9.96 8.74 22.48 0.20 -9.77 16 15 C 0.08 4.63 5.57 -21.27 -0.12 4.51 16 16 C -0.51 -28.10 8.94 23.39 0.21 -27.89 16 17 H 0.07 4.04 8.02 -2.91 -0.02 4.02 16 18 C 0.05 2.60 4.77 85.23 0.41 3.00 16 19 N -0.80 -41.12 11.78 21.82 0.26 -40.86 16 20 Si 0.97 37.91 29.66 68.60 2.03 39.94 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 C -0.24 -13.29 9.74 22.48 0.22 -13.07 16 25 C -0.08 -3.90 8.59 22.13 0.19 -3.71 16 26 H 0.06 0.66 7.68 -2.39 -0.02 0.64 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.05 0.71 6.55 -2.39 -0.02 0.70 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.61 6.78 -2.39 -0.02 0.59 16 33 H 0.38 4.07 7.33 -74.05 -0.54 3.53 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.39 6.71 -2.39 -0.02 1.38 16 36 H 0.41 7.56 8.49 -92.70 -0.79 6.77 16 37 H 0.41 11.05 8.84 -92.71 -0.82 10.23 16 38 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.10 5.30 6.53 -2.91 -0.02 5.28 16 40 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 41 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.10 5.07 6.44 -2.91 -0.02 5.05 16 Total: -1.00 -69.43 345.61 -0.24 -69.67 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -1.09 Total: 38.44 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.80 Total: -23.65 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -4.06 Total: -85.92 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.93 Total: -38.48 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -69.43 -0.24 -69.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133726944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.267 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds