Wall clock time and date at job start Tue Mar 31 2020 07:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46645 * 2 1 4 4 C 1.52996 * 109.47270 * 239.99988 * 2 1 3 5 5 C 1.53002 * 109.47177 * 119.99866 * 2 1 3 6 6 N 1.46504 * 109.46919 * 63.46261 * 5 2 1 7 7 C 1.46509 * 119.99942 * 269.15991 * 6 5 2 8 8 C 1.50703 * 109.46509 * 278.70516 * 7 6 5 9 9 H 1.07997 * 120.00744 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99411 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00168 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99868 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46977 * 89.99998 * 12 10 8 14 14 H 1.48499 * 109.47403 * 210.00220 * 12 10 8 15 15 H 1.48500 * 109.47362 * 330.00601 * 12 10 8 16 16 C 1.34770 * 119.99897 * 89.15952 * 6 5 2 17 17 O 1.21474 * 120.00583 * 6.57590 * 16 6 5 18 18 C 1.48463 * 119.99954 * 186.57742 * 16 6 5 19 19 C 1.41156 * 120.53532 * 329.59939 * 18 16 6 20 20 C 1.35261 * 119.86750 * 180.02562 * 19 18 16 21 21 N 1.35704 * 121.00210 * 0.02562 * 20 19 18 22 22 H 0.97000 * 119.44089 * 180.02562 * 21 20 19 23 23 C 1.34592 * 121.11607 * 0.02562 * 21 20 19 24 24 O 1.22017 * 119.96420 * 180.27471 * 23 21 20 25 25 C 1.38296 * 120.54071 * 149.62786 * 18 16 6 26 26 H 1.08999 * 109.47373 * 299.99372 * 1 2 3 27 27 H 1.08998 * 109.47114 * 60.00573 * 1 2 3 28 28 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46795 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46897 * 299.99559 * 3 2 1 31 31 H 1.08994 * 109.47143 * 60.00427 * 3 2 1 32 32 H 1.09009 * 109.47420 * 305.38206 * 4 2 1 33 33 H 1.08996 * 109.47261 * 65.37430 * 4 2 1 34 34 H 1.08996 * 109.47569 * 185.38055 * 4 2 1 35 35 H 1.08995 * 109.46983 * 303.46827 * 5 2 1 36 36 H 1.08998 * 109.47144 * 183.46257 * 5 2 1 37 37 H 1.08994 * 109.47149 * 38.70135 * 7 6 5 38 38 H 1.08988 * 109.46900 * 158.70701 * 7 6 5 39 39 H 0.97007 * 120.00257 * 180.02562 * 11 10 8 40 40 H 1.08000 * 120.06679 * 0.04710 * 19 18 16 41 41 H 1.07996 * 119.50516 * 180.02562 * 20 19 18 42 42 H 1.07995 * 120.49117 * 359.97438 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.6210 -2.1245 1.2083 7 6 0.3498 -2.5274 1.8151 8 6 0.5333 -2.6933 3.3017 9 1 1.5000 -2.5168 3.7496 10 6 -0.5332 -3.0705 4.0900 11 7 -1.7103 -3.2860 3.5446 12 14 -0.3057 -3.2769 5.9326 13 1 -0.5796 -1.9856 6.6129 14 1 -1.2465 -4.3103 6.4349 15 1 1.0898 -3.6988 6.2149 16 6 2.4048 -3.0446 0.6123 17 8 3.5104 -2.7355 0.2153 18 6 1.9170 -4.4363 0.4409 19 6 1.0167 -5.0003 1.3704 20 6 0.5814 -6.2697 1.2014 21 7 0.9973 -7.0169 0.1477 22 1 0.6703 -7.9247 0.0483 23 6 1.8558 -6.5196 -0.7618 24 8 2.2121 -7.2083 -1.7039 25 6 2.3377 -5.2014 -0.6315 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6001 -1.7174 -1.2988 33 1 1.7575 -0.1549 -2.1366 34 1 3.1257 -0.8055 -1.2024 35 1 1.6268 -0.2445 2.1381 36 1 3.1283 -0.6678 1.2808 37 1 -0.4023 -1.7617 1.6251 38 1 0.0237 -3.4726 1.3815 39 1 -2.4607 -3.5510 4.0992 40 1 0.6759 -4.4193 2.2146 41 1 -0.1077 -6.6952 1.9159 42 1 3.0262 -4.7953 -1.3578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153573489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:14 Heat of formation + Delta-G solvation = -30.535662 kcal Electronic energy + Delta-G solvation = -24697.922325 eV Core-core repulsion = 21258.016328 eV Total energy + Delta-G solvation = -3439.905997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.89593 -39.50504 -36.89858 -36.44626 -34.78914 -32.99107 -32.56557 -29.52885 -27.85890 -26.99032 -26.87909 -26.46809 -24.03673 -23.14113 -22.57244 -19.48489 -18.40261 -18.20454 -17.18246 -16.80381 -16.48593 -15.44570 -15.21626 -15.03115 -14.87830 -14.54917 -14.15038 -13.82398 -13.70934 -13.24538 -13.03101 -12.64879 -12.55724 -12.04930 -11.90801 -11.83276 -11.67184 -11.28881 -11.23547 -11.10008 -11.02906 -10.75813 -10.53880 -10.38301 -10.27694 -10.14271 -10.02029 -9.86322 -9.63741 -9.14642 -8.71756 -7.82835 -7.56602 -6.39209 -4.48617 0.88188 2.16569 3.10152 3.19028 3.22024 3.26129 3.34187 3.71588 4.09199 4.18842 4.90923 4.97138 5.02297 5.15941 5.19140 5.30973 5.33833 5.65672 5.78742 5.84460 5.86883 5.90797 6.08900 6.13745 6.17877 6.22317 6.27764 6.35089 6.45158 6.52999 6.56387 6.58806 6.74379 6.80342 6.85824 7.03561 7.10065 7.30309 7.40024 7.56287 7.83014 8.18075 8.30031 8.59440 8.81604 9.19548 10.64585 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.008601 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.247400 B = 3254.697346 C = 5565.624098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.134 4.134 5 C 0.129 3.871 6 N -0.578 5.578 7 C 0.198 3.802 8 C -0.544 4.544 9 H 0.066 0.934 10 C 0.070 3.930 11 N -0.882 5.882 12 Si 0.894 3.106 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.551 3.449 17 O -0.554 6.554 18 C -0.011 4.011 19 C -0.217 4.217 20 C 0.104 3.896 21 N -0.604 5.604 22 H 0.409 0.591 23 C 0.514 3.486 24 O -0.570 6.570 25 C -0.201 4.201 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.268 0.732 40 H 0.218 0.782 41 H 0.166 0.834 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 1.290 -2.620 2.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.191 4.191 5 C 0.006 3.994 6 N -0.306 5.306 7 C 0.078 3.922 8 C -0.582 4.582 9 H 0.084 0.916 10 C -0.135 4.135 11 N -0.519 5.519 12 Si 0.721 3.279 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.195 1.195 16 C 0.338 3.662 17 O -0.434 6.434 18 C -0.018 4.018 19 C -0.238 4.238 20 C -0.021 4.021 21 N -0.236 5.236 22 H 0.246 0.754 23 C 0.315 3.685 24 O -0.455 6.455 25 C -0.224 4.224 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.234 0.766 41 H 0.183 0.817 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.016 1.173 -3.325 3.669 hybrid contribution -0.371 -0.431 1.194 1.322 sum 0.645 0.742 -2.131 2.347 Atomic orbital electron populations 1.21982 0.94333 1.02699 1.00878 1.20957 0.96218 0.95167 0.96230 1.21780 1.00812 0.95295 1.01453 1.21847 1.01639 0.99690 0.95940 1.21426 0.99982 0.81031 0.96988 1.48017 1.22631 1.06695 1.53283 1.20531 0.79993 0.98712 0.92916 1.21487 0.96837 1.47773 0.92088 0.91627 1.24965 0.94817 0.94684 0.99053 1.69927 1.00632 1.45068 1.36228 0.86534 0.78414 0.78253 0.84661 1.20367 1.20916 1.19542 1.18276 0.84796 0.84687 0.78433 1.90682 1.20180 1.80774 1.51790 1.20687 0.93147 0.94292 0.93642 1.22826 1.00264 0.95314 1.05419 1.21968 0.98011 0.92460 0.89675 1.43533 1.39962 1.17112 1.23022 0.75406 1.17004 0.80189 0.88718 0.82575 1.90945 1.60879 1.61562 1.32113 1.22514 1.05236 0.93252 1.01403 0.92554 0.93667 0.91526 0.92773 0.92878 0.92654 0.93170 0.93756 0.91922 0.89979 0.90800 0.93681 0.91322 0.92172 0.76626 0.81694 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.45 37.16 0.28 -1.88 16 2 C -0.08 -1.28 0.85 -154.51 -0.13 -1.41 16 3 C -0.14 -1.70 8.47 37.16 0.31 -1.39 16 4 C -0.13 -2.11 7.13 37.16 0.26 -1.85 16 5 C 0.13 2.24 4.59 -4.04 -0.02 2.22 16 6 N -0.58 -11.14 2.01 -175.94 -0.35 -11.49 16 7 C 0.20 4.10 3.92 -5.19 -0.02 4.08 16 8 C -0.54 -12.31 7.52 -34.44 -0.26 -12.57 16 9 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.07 1.60 5.33 -17.82 -0.09 1.50 16 11 N -0.88 -20.93 13.29 55.43 0.74 -20.19 16 12 Si 0.89 18.34 29.54 -169.99 -5.02 13.32 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 C 0.55 11.06 5.71 -12.05 -0.07 10.99 16 17 O -0.55 -11.98 14.75 5.39 0.08 -11.90 16 18 C -0.01 -0.20 5.59 -104.55 -0.58 -0.78 16 19 C -0.22 -3.83 7.47 -39.54 -0.30 -4.13 16 20 C 0.10 1.48 11.15 -16.90 -0.19 1.30 16 21 N -0.60 -8.48 5.23 -14.95 -0.08 -8.56 16 22 H 0.41 4.44 8.88 -40.82 -0.36 4.08 16 23 C 0.51 9.16 7.70 -15.31 -0.12 9.04 16 24 O -0.57 -11.73 17.93 4.90 0.09 -11.64 16 25 C -0.20 -3.69 9.62 -38.53 -0.37 -4.06 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.13 5.82 -51.93 -0.30 0.83 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.87 6.65 -51.92 -0.35 0.53 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.05 7.31 -51.93 -0.38 0.67 16 35 H 0.08 1.42 8.07 -51.93 -0.42 1.01 16 36 H 0.07 1.31 7.37 -51.93 -0.38 0.93 16 37 H 0.05 0.99 5.75 -51.93 -0.30 0.69 16 38 H 0.07 1.45 4.02 -51.94 -0.21 1.24 16 39 H 0.27 6.13 8.31 -40.82 -0.34 5.79 16 40 H 0.22 4.31 3.22 -52.49 -0.17 4.14 16 41 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.15 2.79 7.96 -52.49 -0.42 2.37 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -27.49 334.62 -6.59 -34.08 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.79 Total: 10.29 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.29 Total: 1.06 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.31 Total: -40.24 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.54 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.49 -6.59 -34.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153573489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.540 kcal (2) G-P(sol) polarization free energy of solvation -27.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds