Wall clock time and date at job start Tue Mar 31 2020 07:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46645 * 2 1 4 4 C 1.52996 * 109.47270 * 239.99988 * 2 1 3 5 5 C 1.53002 * 109.47177 * 119.99866 * 2 1 3 6 6 N 1.46504 * 109.46919 * 63.46261 * 5 2 1 7 7 C 1.46509 * 119.99942 * 269.15991 * 6 5 2 8 8 C 1.50703 * 109.46509 * 278.70516 * 7 6 5 9 9 H 1.07997 * 120.00744 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99411 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00168 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99868 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46977 * 89.99998 * 12 10 8 14 14 H 1.48499 * 109.47403 * 210.00220 * 12 10 8 15 15 H 1.48500 * 109.47362 * 330.00601 * 12 10 8 16 16 C 1.34770 * 119.99897 * 89.15952 * 6 5 2 17 17 O 1.21474 * 120.00583 * 6.57590 * 16 6 5 18 18 C 1.48463 * 119.99954 * 186.57742 * 16 6 5 19 19 C 1.41156 * 120.53532 * 329.59939 * 18 16 6 20 20 C 1.35261 * 119.86750 * 180.02562 * 19 18 16 21 21 N 1.35704 * 121.00210 * 0.02562 * 20 19 18 22 22 H 0.97000 * 119.44089 * 180.02562 * 21 20 19 23 23 C 1.34592 * 121.11607 * 0.02562 * 21 20 19 24 24 O 1.22017 * 119.96420 * 180.27471 * 23 21 20 25 25 C 1.38296 * 120.54071 * 149.62786 * 18 16 6 26 26 H 1.08999 * 109.47373 * 299.99372 * 1 2 3 27 27 H 1.08998 * 109.47114 * 60.00573 * 1 2 3 28 28 H 1.09001 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.46795 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46897 * 299.99559 * 3 2 1 31 31 H 1.08994 * 109.47143 * 60.00427 * 3 2 1 32 32 H 1.09009 * 109.47420 * 305.38206 * 4 2 1 33 33 H 1.08996 * 109.47261 * 65.37430 * 4 2 1 34 34 H 1.08996 * 109.47569 * 185.38055 * 4 2 1 35 35 H 1.08995 * 109.46983 * 303.46827 * 5 2 1 36 36 H 1.08998 * 109.47144 * 183.46257 * 5 2 1 37 37 H 1.08994 * 109.47149 * 38.70135 * 7 6 5 38 38 H 1.08988 * 109.46900 * 158.70701 * 7 6 5 39 39 H 0.97007 * 120.00257 * 180.02562 * 11 10 8 40 40 H 1.08000 * 120.06679 * 0.04710 * 19 18 16 41 41 H 1.07996 * 119.50516 * 180.02562 * 20 19 18 42 42 H 1.07995 * 120.49117 * 359.97438 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.6210 -2.1245 1.2083 7 6 0.3498 -2.5274 1.8151 8 6 0.5333 -2.6933 3.3017 9 1 1.5000 -2.5168 3.7496 10 6 -0.5332 -3.0705 4.0900 11 7 -1.7103 -3.2860 3.5446 12 14 -0.3057 -3.2769 5.9326 13 1 -0.5796 -1.9856 6.6129 14 1 -1.2465 -4.3103 6.4349 15 1 1.0898 -3.6988 6.2149 16 6 2.4048 -3.0446 0.6123 17 8 3.5104 -2.7355 0.2153 18 6 1.9170 -4.4363 0.4409 19 6 1.0167 -5.0003 1.3704 20 6 0.5814 -6.2697 1.2014 21 7 0.9973 -7.0169 0.1477 22 1 0.6703 -7.9247 0.0483 23 6 1.8558 -6.5196 -0.7618 24 8 2.2121 -7.2083 -1.7039 25 6 2.3377 -5.2014 -0.6315 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6001 -1.7174 -1.2988 33 1 1.7575 -0.1549 -2.1366 34 1 3.1257 -0.8055 -1.2024 35 1 1.6268 -0.2445 2.1381 36 1 3.1283 -0.6678 1.2808 37 1 -0.4023 -1.7617 1.6251 38 1 0.0237 -3.4726 1.3815 39 1 -2.4607 -3.5510 4.0992 40 1 0.6759 -4.4193 2.2146 41 1 -0.1077 -6.6952 1.9159 42 1 3.0262 -4.7953 -1.3578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153573489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:13 Heat of formation + Delta-G solvation = -46.207945 kcal Electronic energy + Delta-G solvation = -24698.601926 eV Core-core repulsion = 21258.016328 eV Total energy + Delta-G solvation = -3440.585598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31090 -40.99750 -38.27637 -37.92965 -36.33742 -34.46774 -34.18749 -30.94740 -29.45399 -28.29065 -28.08117 -27.87696 -25.52746 -24.64471 -24.05966 -20.92099 -19.71531 -19.59248 -18.69378 -18.44734 -17.98254 -16.95619 -16.69289 -16.53188 -16.34020 -16.09941 -15.49010 -15.15674 -15.05486 -14.67721 -14.41256 -14.26875 -14.09356 -13.37178 -13.30828 -13.09045 -13.00435 -12.80534 -12.72837 -12.51642 -12.43169 -12.15906 -11.99986 -11.88415 -11.61616 -11.56712 -11.53717 -11.39513 -11.16245 -10.76053 -10.41631 -9.40165 -8.96348 -8.14920 -6.29048 -0.51931 0.76550 1.46803 1.53250 1.59460 1.79875 1.99325 2.21421 2.46577 2.69415 3.13694 3.48305 3.82040 3.91030 3.92168 3.96489 4.07274 4.36656 4.36828 4.57780 4.59739 4.76975 4.81100 4.86059 4.91770 4.94291 4.99038 5.07327 5.09447 5.19198 5.23809 5.28544 5.39539 5.48205 5.53297 5.56621 5.71107 5.76122 5.85727 5.93918 6.09640 6.55787 6.83760 6.94891 7.21164 7.42111 8.88128 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009447 B = 0.008601 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.247400 B = 3254.697346 C = 5565.624098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.126 4.126 5 C 0.124 3.876 6 N -0.575 5.575 7 C 0.210 3.790 8 C -0.548 4.548 9 H 0.050 0.950 10 C 0.042 3.958 11 N -0.900 5.900 12 Si 0.944 3.056 13 H -0.283 1.283 14 H -0.277 1.277 15 H -0.275 1.275 16 C 0.545 3.455 17 O -0.577 6.577 18 C -0.012 4.012 19 C -0.248 4.248 20 C 0.148 3.852 21 N -0.581 5.581 22 H 0.431 0.569 23 C 0.513 3.487 24 O -0.601 6.601 25 C -0.218 4.218 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.271 0.729 40 H 0.200 0.800 41 H 0.211 0.789 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 0.945 -2.027 2.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.184 4.184 5 C 0.002 3.998 6 N -0.303 5.303 7 C 0.090 3.910 8 C -0.586 4.586 9 H 0.069 0.931 10 C -0.161 4.161 11 N -0.538 5.538 12 Si 0.770 3.230 13 H -0.209 1.209 14 H -0.202 1.202 15 H -0.200 1.200 16 C 0.333 3.667 17 O -0.459 6.459 18 C -0.019 4.019 19 C -0.269 4.269 20 C 0.021 3.979 21 N -0.213 5.213 22 H 0.271 0.729 23 C 0.315 3.685 24 O -0.489 6.489 25 C -0.241 4.241 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.216 0.784 41 H 0.228 0.772 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.053 0.815 -2.723 2.843 hybrid contribution -0.072 -0.340 1.053 1.109 sum -0.125 0.475 -1.670 1.741 Atomic orbital electron populations 1.21907 0.94159 1.01450 1.01788 1.20936 0.96228 0.96497 0.94509 1.21738 1.00977 0.93301 1.02748 1.21764 1.00458 0.98880 0.97265 1.21574 0.99567 0.80373 0.98311 1.48028 1.22074 1.07447 1.52746 1.20332 0.80122 0.98396 0.92114 1.21516 0.96233 1.47842 0.93007 0.93121 1.25392 0.94586 0.94477 1.01616 1.69980 1.01008 1.45637 1.37188 0.85775 0.78023 0.77894 0.81281 1.20932 1.20197 1.19980 1.18559 0.84588 0.85431 0.78150 1.90656 1.21084 1.81322 1.52844 1.20651 0.93552 0.93607 0.94137 1.22586 1.01877 0.97032 1.05370 1.22471 0.95690 0.90921 0.88807 1.43383 1.38208 1.17971 1.21739 0.72893 1.16868 0.80606 0.88240 0.82761 1.90929 1.62278 1.62166 1.33532 1.22392 1.06178 0.93973 1.01595 0.92661 0.91663 0.93824 0.92542 0.91137 0.91809 0.95451 0.91614 0.93350 0.90215 0.91574 0.94883 0.91152 0.91963 0.78354 0.77227 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 7.45 71.98 0.54 -3.49 16 2 C -0.08 -2.39 0.85 -52.18 -0.04 -2.44 16 3 C -0.13 -3.04 8.47 71.98 0.61 -2.43 16 4 C -0.13 -3.98 7.13 71.98 0.51 -3.46 16 5 C 0.12 4.39 4.59 86.38 0.40 4.78 16 6 N -0.58 -22.70 2.01 -828.87 -1.66 -24.36 16 7 C 0.21 8.81 3.92 85.63 0.34 9.14 16 8 C -0.55 -24.82 7.52 25.60 0.19 -24.63 16 9 H 0.05 2.41 7.81 -2.91 -0.02 2.39 16 10 C 0.04 1.90 5.33 84.66 0.45 2.35 16 11 N -0.90 -41.80 13.29 21.45 0.28 -41.52 16 12 Si 0.94 36.83 29.54 68.60 2.03 38.85 16 13 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -10.45 7.11 99.48 0.71 -9.75 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 16 C 0.54 22.50 5.71 86.97 0.50 23.00 16 17 O -0.58 -25.85 14.75 -3.63 -0.05 -25.90 16 18 C -0.01 -0.47 5.59 -19.82 -0.11 -0.58 16 19 C -0.25 -8.48 7.47 22.30 0.17 -8.32 16 20 C 0.15 3.75 11.15 83.41 0.93 4.68 16 21 N -0.58 -14.72 5.23 -319.41 -1.67 -16.39 16 22 H 0.43 7.79 8.88 -92.71 -0.82 6.96 16 23 C 0.51 17.84 7.70 84.94 0.65 18.49 16 24 O -0.60 -24.47 17.93 -5.37 -0.10 -24.56 16 25 C -0.22 -8.14 9.62 22.95 0.22 -7.92 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.49 5.82 -2.39 -0.01 1.47 16 29 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 0.96 6.65 -2.38 -0.02 0.94 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.65 7.31 -2.39 -0.02 1.63 16 35 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 36 H 0.07 2.41 7.37 -2.39 -0.02 2.40 16 37 H 0.03 1.47 5.75 -2.39 -0.01 1.46 16 38 H 0.07 2.98 4.02 -2.40 -0.01 2.97 16 39 H 0.27 12.00 8.31 -92.70 -0.77 11.23 16 40 H 0.20 7.79 3.22 -2.91 -0.01 7.78 16 41 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.14 5.43 7.96 -2.91 -0.02 5.41 16 Total: -1.00 -59.54 334.62 4.40 -55.14 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.22 Total: 29.56 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.35 Total: 9.19 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.05 Total: -82.28 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -0.15 Total: -50.47 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.85 kcal Total: -59.54 4.40 -55.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153573489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.930 kcal (2) G-P(sol) polarization free energy of solvation -59.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds