Wall clock time and date at job start Tue Mar 31 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47426 * 2 1 4 4 C 1.53002 * 109.46696 * 120.00584 * 2 1 3 5 5 C 1.50699 * 109.46873 * 174.99980 * 4 2 1 6 6 O 1.21278 * 120.00056 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.39581 * 119.99990 * 179.97438 * 7 5 4 9 9 N 1.32276 * 119.72745 * 0.26696 * 8 7 5 10 10 C 1.31949 * 121.69079 * 180.30946 * 9 8 7 11 11 C 1.38093 * 120.95747 * 359.70619 * 10 9 8 12 12 C 1.38775 * 119.35013 * 359.97438 * 11 10 9 13 13 C 1.38801 * 118.45054 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50125 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 H 1.09003 * 109.46766 * 300.00391 * 1 2 3 26 26 H 1.09004 * 109.46889 * 59.99449 * 1 2 3 27 27 H 1.08991 * 109.47758 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46766 * 239.99609 * 2 1 3 29 29 H 1.09009 * 109.47064 * 60.00027 * 3 2 1 30 30 H 1.09001 * 109.47472 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47654 * 299.99868 * 3 2 1 32 32 H 1.08995 * 109.47518 * 54.99550 * 4 2 1 33 33 H 1.09002 * 109.47042 * 294.99535 * 4 2 1 34 34 H 0.97000 * 120.00150 * 359.97438 * 7 5 4 35 35 H 1.08000 * 119.52722 * 179.72569 * 10 9 8 36 36 H 1.07997 * 120.32692 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.77560 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 39 39 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 40 40 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 42 42 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5418 -0.8296 1.1889 6 8 4.1449 -0.3749 0.2400 7 7 4.2148 -1.4316 2.1895 8 6 5.6058 -1.5323 2.1334 9 7 6.2586 -1.0302 1.0982 10 6 7.5722 -1.1091 1.0026 11 6 8.3211 -1.7180 1.9902 12 6 7.6791 -2.2532 3.0980 13 6 6.2966 -2.1550 3.1727 14 8 5.6251 -2.6654 4.2391 15 6 6.4063 -3.2946 5.2570 16 6 5.4837 -3.8027 6.3669 17 6 6.3075 -4.4668 7.4400 18 1 7.3815 -4.5213 7.3402 19 6 5.6900 -5.0056 8.5487 20 7 4.3821 -4.9397 8.6701 21 14 6.7110 -5.8281 9.8792 22 1 8.1476 -5.7707 9.5073 23 1 6.5047 -5.1219 11.1692 24 1 6.2926 -7.2461 10.0187 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6769 1.9563 -0.8899 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1585 2.1370 34 1 3.7325 -1.7949 2.9486 35 1 8.0692 -0.6910 0.1396 36 1 9.3958 -1.7772 1.9013 37 1 8.2422 -2.7342 3.8842 38 1 7.1107 -2.5738 5.6721 39 1 6.9549 -4.1331 4.8279 40 1 4.9355 -2.9641 6.7959 41 1 4.7791 -4.5235 5.9521 42 1 3.9477 -5.3184 9.4502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170693752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:09 Heat of formation + Delta-G solvation = -51.110646 kcal Electronic energy + Delta-G solvation = -22784.091558 eV Core-core repulsion = 19343.293363 eV Total energy + Delta-G solvation = -3440.798196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88509 -39.43415 -37.79950 -35.86423 -34.64097 -33.48393 -31.66266 -30.70012 -29.46132 -27.93722 -27.20355 -25.42470 -23.67026 -22.80315 -21.31252 -20.57751 -19.85003 -18.31445 -17.50010 -17.13746 -16.18386 -15.96908 -15.79046 -15.48744 -14.93899 -14.67909 -14.58766 -14.09219 -13.92982 -13.88319 -13.45087 -12.87338 -12.47253 -12.42045 -12.35338 -12.06074 -12.00410 -11.91299 -11.28165 -11.05912 -11.03151 -11.02209 -10.81302 -10.68550 -10.60522 -10.10238 -10.06080 -9.77830 -9.40442 -9.20472 -8.97459 -8.53721 -7.64974 -6.19260 -4.24117 1.21677 1.45304 2.75767 2.93795 3.20874 3.28136 3.31118 3.53068 4.01999 4.32834 4.40300 4.60592 4.76961 4.79521 4.95447 5.06747 5.16581 5.17769 5.31093 5.36562 5.44937 5.46840 5.51431 5.56203 5.76703 5.84772 5.85718 5.89077 5.99122 6.07142 6.18885 6.22783 6.31329 6.40831 6.53504 6.64849 7.30358 7.34107 7.51410 7.63580 7.84576 8.09405 8.13314 8.39287 8.81325 9.40974 10.92219 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003310 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.858295 B = 8458.301438 C =10048.201459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.154 4.154 4 C -0.138 4.138 5 C 0.503 3.497 6 O -0.479 6.479 7 N -0.654 5.654 8 C 0.328 3.672 9 N -0.444 5.444 10 C 0.074 3.926 11 C -0.161 4.161 12 C -0.148 4.148 13 C 0.066 3.934 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.026 3.974 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.424 0.576 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 8.481 -14.856 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.178 4.178 5 C 0.289 3.711 6 O -0.349 6.349 7 N -0.302 5.302 8 C 0.095 3.905 9 N -0.159 5.159 10 C -0.082 4.082 11 C -0.182 4.182 12 C -0.175 4.175 13 C 0.014 3.986 14 O -0.228 6.228 15 C -0.008 4.008 16 C -0.011 4.011 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.261 0.739 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.304 9.184 -16.052 18.637 hybrid contribution 1.038 -1.220 2.060 2.610 sum -1.266 7.964 -13.992 16.150 Atomic orbital electron populations 1.21864 0.94920 1.01791 1.01956 1.20858 0.95064 0.96895 0.97059 1.21970 1.03265 0.94961 1.00942 1.21818 0.91284 1.03407 1.01264 1.20937 0.90184 0.77804 0.82148 1.90744 1.69652 1.43160 1.31321 1.43601 1.03859 1.57982 1.24791 1.17861 0.84930 0.97377 0.90287 1.67626 1.10053 1.17381 1.20838 1.22409 0.88391 0.98558 0.98871 1.21886 1.01258 1.00367 0.94717 1.21610 0.92769 1.02717 1.00410 1.19618 0.91598 0.97724 0.89615 1.86099 1.37336 1.70597 1.28816 1.23394 0.95828 0.94743 0.86819 1.19130 0.94854 0.96876 0.90213 1.20984 0.93491 1.37849 1.04262 0.92296 1.24982 0.95014 0.95898 0.98231 1.69973 1.08326 1.45068 1.29298 0.86430 0.80311 0.79172 0.81478 1.19629 1.20789 1.20795 0.92566 0.92459 0.92610 0.90388 0.93361 0.90604 0.93031 0.88585 0.88583 0.73859 0.82679 0.84836 0.83785 0.92963 0.92959 0.95343 0.95349 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.08 -0.77 2.57 -90.62 -0.23 -1.01 16 3 C -0.15 -1.60 8.93 37.15 0.33 -1.27 16 4 C -0.14 -1.35 5.17 -27.88 -0.14 -1.49 16 5 C 0.50 6.96 7.51 -10.99 -0.08 6.87 16 6 O -0.48 -8.04 12.22 5.56 0.07 -7.97 16 7 N -0.65 -9.48 5.39 -11.29 -0.06 -9.54 16 8 C 0.33 5.45 7.45 -154.43 -1.15 4.30 16 9 N -0.44 -7.42 7.88 -12.22 -0.10 -7.52 16 10 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 11 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 12 C -0.15 -2.18 9.14 -39.17 -0.36 -2.53 16 13 C 0.07 1.10 6.72 -38.91 -0.26 0.84 16 14 O -0.32 -5.81 9.39 -19.66 -0.18 -5.99 16 15 C 0.07 1.30 4.70 37.16 0.17 1.48 16 16 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 17 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 21 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.42 5.46 8.04 -40.82 -0.33 5.13 16 35 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 38 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 39 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 350.82 15.07 5.29 5.29 Total: -1.00 -31.54 350.82 -8.19 -39.72 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.38 Total: 2.63 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.54 Total: -7.49 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.58 Total: -41.77 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.12 Total: -13.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.54 -8.19 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170693752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.386 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds