Wall clock time and date at job start Tue Mar 31 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47426 * 2 1 4 4 C 1.53002 * 109.46696 * 120.00584 * 2 1 3 5 5 C 1.50699 * 109.46873 * 174.99980 * 4 2 1 6 6 O 1.21278 * 120.00056 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99823 * 179.97438 * 5 4 2 8 8 C 1.39581 * 119.99990 * 179.97438 * 7 5 4 9 9 N 1.32276 * 119.72745 * 0.26696 * 8 7 5 10 10 C 1.31949 * 121.69079 * 180.30946 * 9 8 7 11 11 C 1.38093 * 120.95747 * 359.70619 * 10 9 8 12 12 C 1.38775 * 119.35013 * 359.97438 * 11 10 9 13 13 C 1.38801 * 118.45054 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50125 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 H 1.09003 * 109.46766 * 300.00391 * 1 2 3 26 26 H 1.09004 * 109.46889 * 59.99449 * 1 2 3 27 27 H 1.08991 * 109.47758 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46766 * 239.99609 * 2 1 3 29 29 H 1.09009 * 109.47064 * 60.00027 * 3 2 1 30 30 H 1.09001 * 109.47472 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47654 * 299.99868 * 3 2 1 32 32 H 1.08995 * 109.47518 * 54.99550 * 4 2 1 33 33 H 1.09002 * 109.47042 * 294.99535 * 4 2 1 34 34 H 0.97000 * 120.00150 * 359.97438 * 7 5 4 35 35 H 1.08000 * 119.52722 * 179.72569 * 10 9 8 36 36 H 1.07997 * 120.32692 * 179.97438 * 11 10 9 37 37 H 1.08002 * 120.77560 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 39 39 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 40 40 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 42 42 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5418 -0.8296 1.1889 6 8 4.1449 -0.3749 0.2400 7 7 4.2148 -1.4316 2.1895 8 6 5.6058 -1.5323 2.1334 9 7 6.2586 -1.0302 1.0982 10 6 7.5722 -1.1091 1.0026 11 6 8.3211 -1.7180 1.9902 12 6 7.6791 -2.2532 3.0980 13 6 6.2966 -2.1550 3.1727 14 8 5.6251 -2.6654 4.2391 15 6 6.4063 -3.2946 5.2570 16 6 5.4837 -3.8027 6.3669 17 6 6.3075 -4.4668 7.4400 18 1 7.3815 -4.5213 7.3402 19 6 5.6900 -5.0056 8.5487 20 7 4.3821 -4.9397 8.6701 21 14 6.7110 -5.8281 9.8792 22 1 8.1476 -5.7707 9.5073 23 1 6.5047 -5.1219 11.1692 24 1 6.2926 -7.2461 10.0187 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6769 1.9563 -0.8899 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1585 2.1370 34 1 3.7325 -1.7949 2.9486 35 1 8.0692 -0.6910 0.1396 36 1 9.3958 -1.7772 1.9013 37 1 8.2422 -2.7342 3.8842 38 1 7.1107 -2.5738 5.6721 39 1 6.9549 -4.1331 4.8279 40 1 4.9355 -2.9641 6.7959 41 1 4.7791 -4.5235 5.9521 42 1 3.9477 -5.3184 9.4502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170693752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:09 Heat of formation + Delta-G solvation = -69.511773 kcal Electronic energy + Delta-G solvation = -22784.889491 eV Core-core repulsion = 19343.293363 eV Total energy + Delta-G solvation = -3441.596128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04428 -40.56808 -39.11824 -36.72574 -35.77883 -35.42969 -32.91221 -32.31949 -30.74011 -28.86301 -27.93542 -27.16848 -25.01626 -23.99756 -22.83710 -21.73948 -20.78425 -19.57500 -18.84250 -18.25605 -18.01507 -17.20431 -17.01527 -16.63008 -16.45696 -15.99409 -15.69047 -15.21345 -15.06696 -14.79175 -14.53985 -14.35562 -14.16060 -13.65632 -13.32434 -13.29055 -13.03674 -12.79423 -12.78044 -12.73132 -12.43795 -12.13505 -11.82620 -11.76337 -11.66228 -11.62120 -11.56368 -11.40683 -11.15429 -10.61420 -10.39921 -10.11297 -8.84553 -8.25764 -6.38130 0.09614 0.28697 1.42361 1.42872 1.55580 1.70035 1.89370 2.11516 2.44449 2.88021 3.09644 3.39989 3.69854 3.83309 3.85750 4.02116 4.07266 4.16311 4.29007 4.33040 4.38870 4.46951 4.66748 4.70682 4.74543 4.75366 4.86496 4.96200 5.05741 5.12127 5.13934 5.28307 5.30248 5.31483 5.47925 5.50598 5.52498 5.55124 5.73936 6.08092 6.24639 6.33830 6.76867 6.97083 7.30953 7.31970 8.87050 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003310 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.858295 B = 8458.301438 C =10048.201459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.132 4.132 5 C 0.498 3.502 6 O -0.512 6.512 7 N -0.656 5.656 8 C 0.310 3.690 9 N -0.473 5.473 10 C 0.072 3.928 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.039 3.961 14 O -0.328 6.328 15 C 0.084 3.916 16 C 0.030 3.970 17 C -0.544 4.544 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.970 3.030 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.428 0.572 35 H 0.185 0.815 36 H 0.175 0.825 37 H 0.156 0.844 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 8.417 -14.978 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.171 4.171 5 C 0.287 3.713 6 O -0.384 6.384 7 N -0.304 5.304 8 C 0.078 3.922 9 N -0.189 5.189 10 C -0.084 4.084 11 C -0.167 4.167 12 C -0.176 4.176 13 C -0.012 4.012 14 O -0.242 6.242 15 C 0.009 3.991 16 C -0.007 4.007 17 C -0.582 4.582 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.794 3.206 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.266 0.734 35 H 0.202 0.798 36 H 0.192 0.808 37 H 0.174 0.826 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.998 9.124 -16.183 18.605 hybrid contribution 0.681 -1.134 1.979 2.380 sum -0.317 7.990 -14.204 16.300 Atomic orbital electron populations 1.21816 0.92886 1.02585 1.02667 1.20848 0.96606 0.96067 0.96237 1.21919 1.01261 0.95843 1.01812 1.21899 0.88218 1.04886 1.02114 1.21676 0.91653 0.76703 0.81302 1.90720 1.70691 1.44528 1.32511 1.43747 1.03531 1.57980 1.25169 1.18094 0.85809 0.97798 0.90460 1.67689 1.11691 1.18273 1.21211 1.23052 0.87694 0.97710 0.99974 1.22266 1.03113 0.98312 0.93058 1.21904 0.91989 1.02350 1.01376 1.19776 0.92685 0.99331 0.89367 1.86024 1.37546 1.71276 1.29325 1.22952 0.94492 0.95461 0.86159 1.18946 0.94950 0.95264 0.91565 1.21426 0.94261 1.37655 1.04821 0.91172 1.25952 0.96130 0.96572 1.00813 1.70103 1.10199 1.46240 1.30238 0.85318 0.79156 0.77891 0.78198 1.18198 1.20451 1.20455 0.91717 0.91899 0.91795 0.92026 0.92421 0.93590 0.92226 0.86650 0.86823 0.73390 0.79780 0.80788 0.82649 0.91881 0.91868 0.97956 0.97955 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.26 16 2 C -0.08 -1.48 2.57 -10.79 -0.03 -1.51 16 3 C -0.15 -3.11 8.93 71.98 0.64 -2.47 16 4 C -0.13 -2.49 5.17 29.85 0.15 -2.34 16 5 C 0.50 14.04 7.51 87.66 0.66 14.70 16 6 O -0.51 -17.71 12.22 -3.02 -0.04 -17.75 16 7 N -0.66 -19.47 5.39 -308.03 -1.66 -21.13 16 8 C 0.31 10.40 7.45 132.98 0.99 11.39 16 9 N -0.47 -15.69 7.88 -192.58 -1.52 -17.21 16 10 C 0.07 1.84 11.17 84.64 0.95 2.79 16 11 C -0.15 -3.26 10.10 22.36 0.23 -3.04 16 12 C -0.15 -4.12 9.14 22.53 0.21 -3.91 16 13 C 0.04 1.30 6.72 22.70 0.15 1.45 16 14 O -0.33 -12.24 9.39 -93.25 -0.88 -13.12 16 15 C 0.08 3.28 4.70 71.98 0.34 3.62 16 16 C 0.03 1.51 5.34 29.85 0.16 1.67 16 17 C -0.54 -28.97 9.11 25.60 0.23 -28.74 16 18 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.00 0.22 5.46 84.65 0.46 0.69 16 20 N -0.93 -54.08 13.29 21.45 0.28 -53.80 16 21 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.36 7.95 -2.39 -0.02 1.34 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 1.23 5.95 -2.39 -0.01 1.22 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.43 11.42 8.04 -92.71 -0.75 10.67 16 35 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 37 H 0.16 3.86 6.44 -2.91 -0.02 3.84 16 38 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 39 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -69.64 350.82 4.30 -65.34 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.27 Total: 20.74 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 5.80 Total: -6.98 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -2.89 Total: -92.14 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.91 Total: -30.87 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -69.64 4.30 -65.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170693752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.169 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds