Wall clock time and date at job start Tue Mar 31 2020 07:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46491 * 2 1 4 4 C 1.52998 * 109.46887 * 119.99360 * 2 1 3 5 5 C 1.53004 * 109.46963 * 65.00316 * 4 2 1 6 6 N 1.46497 * 109.47120 * 179.97438 * 5 4 2 7 7 C 1.46496 * 120.00357 * 270.00447 * 6 5 4 8 8 C 1.50703 * 109.47135 * 277.82009 * 7 6 5 9 9 H 1.08004 * 119.99520 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00178 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00123 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99879 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46791 * 90.00918 * 12 10 8 14 14 H 1.48504 * 109.46844 * 210.00236 * 12 10 8 15 15 H 1.48493 * 109.47373 * 330.00422 * 12 10 8 16 16 C 1.34781 * 119.99620 * 90.00321 * 6 5 4 17 17 O 1.21551 * 120.00340 * 5.91312 * 16 6 5 18 18 C 1.47858 * 119.99783 * 185.91323 * 16 6 5 19 19 C 1.39567 * 120.53255 * 330.57492 * 18 16 6 20 20 N 1.31649 * 120.69004 * 180.02562 * 19 18 16 21 21 C 1.31911 * 121.94072 * 0.02562 * 20 19 18 22 22 C 1.38809 * 121.00092 * 359.97438 * 21 20 19 23 23 O 1.35923 * 120.40178 * 179.97438 * 22 21 20 24 24 C 1.38874 * 119.19414 * 359.97438 * 22 21 20 25 25 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47609 * 300.00419 * 1 2 3 27 27 H 1.09000 * 109.47012 * 60.00536 * 1 2 3 28 28 H 1.08993 * 109.47075 * 239.99680 * 2 1 3 29 29 H 1.09010 * 109.46678 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47054 * 299.99438 * 3 2 1 31 31 H 1.08993 * 109.47722 * 60.00076 * 3 2 1 32 32 H 1.09000 * 109.47415 * 305.00868 * 4 2 1 33 33 H 1.08999 * 109.47345 * 185.00198 * 4 2 1 34 34 H 1.09004 * 109.47052 * 59.99910 * 5 4 2 35 35 H 1.08992 * 109.47273 * 299.99861 * 5 4 2 36 36 H 1.08997 * 109.47352 * 37.82405 * 7 6 5 37 37 H 1.09000 * 109.47564 * 157.82281 * 7 6 5 38 38 H 0.97005 * 119.99974 * 179.97438 * 11 10 8 39 39 H 1.08007 * 119.65392 * 0.04726 * 19 18 16 40 40 H 1.08003 * 119.49901 * 180.02562 * 21 20 19 41 41 H 0.96700 * 114.00447 * 89.99972 * 23 22 21 42 42 H 1.07999 * 120.88261 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1240 -2.8860 2.3841 7 6 3.4523 -3.5039 2.3817 8 6 3.3736 -4.8616 1.7324 9 1 2.4286 -5.2274 1.3586 10 6 4.5080 -5.6363 1.6148 11 7 5.6587 -5.1907 2.0696 12 14 4.4105 -7.3190 0.8093 13 1 4.6523 -7.1841 -0.6496 14 1 5.4394 -8.2114 1.4012 15 1 3.0625 -7.8990 1.0362 16 6 1.3516 -2.9529 3.4865 17 8 0.2103 -2.5358 3.4553 18 6 1.8925 -3.5336 4.7341 19 6 2.8755 -4.5233 4.6875 20 7 3.3590 -5.0428 5.7963 21 6 2.9421 -4.6577 6.9871 22 6 1.9673 -3.6787 7.1212 23 8 1.5464 -3.2914 8.3542 24 6 1.4273 -3.0997 5.9802 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6052 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 2.0699 -2.6549 0.3004 35 1 0.5490 -2.2723 1.1422 36 1 4.1451 -2.8740 1.8238 37 1 3.8048 -3.6117 3.4075 38 1 6.4567 -5.7360 1.9872 39 1 3.2436 -4.8663 3.7318 40 1 3.3664 -5.1104 7.8711 41 1 2.0517 -2.5574 8.7298 42 1 0.6671 -2.3360 6.0528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176321828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:45 Heat of formation + Delta-G solvation = -38.654996 kcal Electronic energy + Delta-G solvation = -23847.845705 eV Core-core repulsion = 20407.587627 eV Total energy + Delta-G solvation = -3440.258078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44042 -38.86991 -36.99038 -36.54505 -35.06005 -32.77535 -31.98092 -30.36755 -28.74733 -27.35003 -27.03873 -24.54071 -23.44585 -22.82251 -22.32824 -19.83780 -19.34055 -17.94051 -16.89083 -16.76355 -16.46471 -15.94319 -15.27244 -15.00648 -14.93664 -14.55744 -14.21293 -13.56071 -13.43268 -13.20787 -12.97317 -12.92105 -12.56711 -12.48552 -12.31163 -12.10008 -11.65700 -11.36464 -11.14053 -11.01363 -11.00653 -10.75906 -10.53890 -10.44916 -10.27800 -10.05943 -9.85825 -9.53174 -9.48199 -8.88850 -8.72157 -8.34738 -7.84166 -6.34724 -4.46442 1.10128 1.47572 3.17928 3.26239 3.28661 3.37031 3.65892 4.09751 4.24575 4.34859 4.86308 4.96801 5.01362 5.08465 5.10471 5.12161 5.24626 5.39465 5.59981 5.70105 5.71375 5.80403 5.86703 5.92751 5.97272 6.00826 6.08869 6.22200 6.27677 6.31238 6.36371 6.48471 6.57188 6.62293 6.65994 7.03156 7.07289 7.37915 7.60062 7.63210 7.82381 8.17304 8.35990 8.61870 8.83311 9.23481 10.69492 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.007014 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.325906 B = 3990.879735 C = 6484.862342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.585 5.585 7 C 0.208 3.792 8 C -0.555 4.555 9 H 0.068 0.932 10 C 0.073 3.927 11 N -0.874 5.874 12 Si 0.899 3.101 13 H -0.277 1.277 14 H -0.281 1.281 15 H -0.270 1.270 16 C 0.561 3.439 17 O -0.565 6.565 18 C -0.173 4.173 19 C 0.116 3.884 20 N -0.471 5.471 21 C 0.092 3.908 22 C 0.021 3.979 23 O -0.492 6.492 24 C -0.053 4.053 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.271 0.729 39 H 0.235 0.765 40 H 0.156 0.844 41 H 0.385 0.615 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 8.030 2.657 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.004 4.004 6 N -0.313 5.313 7 C 0.089 3.911 8 C -0.593 4.593 9 H 0.086 0.914 10 C -0.133 4.133 11 N -0.509 5.509 12 Si 0.726 3.274 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.194 1.194 16 C 0.349 3.651 17 O -0.446 6.446 18 C -0.178 4.178 19 C -0.039 4.039 20 N -0.181 5.181 21 C -0.067 4.067 22 C -0.025 4.025 23 O -0.300 6.300 24 C -0.080 4.080 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.173 0.827 41 H 0.240 0.760 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.767 7.115 2.520 8.436 hybrid contribution -0.148 0.167 -0.150 0.269 sum -3.915 7.283 2.370 8.601 Atomic orbital electron populations 1.21883 0.95340 1.02112 1.01149 1.21045 0.95836 0.95909 0.98476 1.21822 1.00926 0.96181 1.01279 1.21998 1.01188 0.95826 0.97647 1.21417 1.00096 0.90942 0.87986 1.48071 1.19049 1.52754 1.11470 1.20273 0.78070 0.93189 0.99598 1.21443 0.95690 1.01353 1.40815 0.91383 1.25004 0.94906 0.98814 0.94616 1.69913 0.99460 1.37958 1.43592 0.86454 0.78446 0.83046 0.79474 1.20300 1.20689 1.19450 1.17994 0.85068 0.78667 0.83406 1.90679 1.17958 1.51017 1.84996 1.21063 1.01040 1.01654 0.94086 1.25836 0.88443 0.89199 1.00398 1.68057 1.26220 1.25979 0.97827 1.23410 0.92383 0.94024 0.96858 1.19302 0.98658 0.99599 0.84958 1.84863 1.60184 1.55647 1.29330 1.21901 0.97304 0.98059 0.90760 0.92205 0.92810 0.93258 0.91058 0.92752 0.93022 0.92951 0.92141 0.91703 0.90038 0.90493 0.94378 0.92279 0.91933 0.74961 0.82721 0.76009 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 2 C -0.09 -1.19 2.92 -90.62 -0.26 -1.45 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.97 5.01 -26.73 -0.13 -2.11 16 5 C 0.12 2.12 5.21 -4.04 -0.02 2.10 16 6 N -0.58 -12.08 2.46 -176.17 -0.43 -12.51 16 7 C 0.21 4.71 4.64 -5.19 -0.02 4.69 16 8 C -0.56 -13.58 7.47 -34.44 -0.26 -13.84 16 9 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 10 C 0.07 1.82 5.32 -17.82 -0.09 1.73 16 11 N -0.87 -22.65 13.29 55.43 0.74 -21.92 16 12 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 C 0.56 11.96 7.48 -12.32 -0.09 11.87 16 17 O -0.57 -12.82 16.31 5.32 0.09 -12.73 16 18 C -0.17 -3.50 5.59 -104.84 -0.59 -4.08 16 19 C 0.12 2.48 8.68 -17.13 -0.15 2.33 16 20 N -0.47 -9.47 10.34 -12.79 -0.13 -9.60 16 21 C 0.09 1.51 11.13 -17.31 -0.19 1.32 16 22 C 0.02 0.34 6.73 -39.13 -0.26 0.07 16 23 O -0.49 -6.30 13.52 -19.50 -0.26 -6.56 16 24 C -0.05 -0.94 9.68 -38.72 -0.37 -1.31 16 25 H 0.06 0.78 6.57 -51.93 -0.34 0.43 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 35 H 0.08 1.40 5.77 -51.93 -0.30 1.10 16 36 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.06 1.40 4.11 -51.93 -0.21 1.19 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 39 H 0.24 5.52 2.99 -52.48 -0.16 5.36 16 40 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 41 H 0.39 2.91 9.06 45.56 0.41 3.32 16 42 H 0.14 2.31 7.98 -52.49 -0.42 1.89 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -28.50 346.78 -6.79 -35.29 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.21 Total: 9.50 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.78 Total: -1.43 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.17 Total: -44.03 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.18 Total: -19.29 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.50 -6.79 -35.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176321828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.366 kcal (2) G-P(sol) polarization free energy of solvation -28.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds