Wall clock time and date at job start Tue Mar 31 2020 07:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46491 * 2 1 4 4 C 1.52998 * 109.46887 * 119.99360 * 2 1 3 5 5 C 1.53004 * 109.46963 * 65.00316 * 4 2 1 6 6 N 1.46497 * 109.47120 * 179.97438 * 5 4 2 7 7 C 1.46496 * 120.00357 * 270.00447 * 6 5 4 8 8 C 1.50703 * 109.47135 * 277.82009 * 7 6 5 9 9 H 1.08004 * 119.99520 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00178 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00123 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99879 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46791 * 90.00918 * 12 10 8 14 14 H 1.48504 * 109.46844 * 210.00236 * 12 10 8 15 15 H 1.48493 * 109.47373 * 330.00422 * 12 10 8 16 16 C 1.34781 * 119.99620 * 90.00321 * 6 5 4 17 17 O 1.21551 * 120.00340 * 5.91312 * 16 6 5 18 18 C 1.47858 * 119.99783 * 185.91323 * 16 6 5 19 19 C 1.39567 * 120.53255 * 330.57492 * 18 16 6 20 20 N 1.31649 * 120.69004 * 180.02562 * 19 18 16 21 21 C 1.31911 * 121.94072 * 0.02562 * 20 19 18 22 22 C 1.38809 * 121.00092 * 359.97438 * 21 20 19 23 23 O 1.35923 * 120.40178 * 179.97438 * 22 21 20 24 24 C 1.38874 * 119.19414 * 359.97438 * 22 21 20 25 25 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47609 * 300.00419 * 1 2 3 27 27 H 1.09000 * 109.47012 * 60.00536 * 1 2 3 28 28 H 1.08993 * 109.47075 * 239.99680 * 2 1 3 29 29 H 1.09010 * 109.46678 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47054 * 299.99438 * 3 2 1 31 31 H 1.08993 * 109.47722 * 60.00076 * 3 2 1 32 32 H 1.09000 * 109.47415 * 305.00868 * 4 2 1 33 33 H 1.08999 * 109.47345 * 185.00198 * 4 2 1 34 34 H 1.09004 * 109.47052 * 59.99910 * 5 4 2 35 35 H 1.08992 * 109.47273 * 299.99861 * 5 4 2 36 36 H 1.08997 * 109.47352 * 37.82405 * 7 6 5 37 37 H 1.09000 * 109.47564 * 157.82281 * 7 6 5 38 38 H 0.97005 * 119.99974 * 179.97438 * 11 10 8 39 39 H 1.08007 * 119.65392 * 0.04726 * 19 18 16 40 40 H 1.08003 * 119.49901 * 180.02562 * 21 20 19 41 41 H 0.96700 * 114.00447 * 89.99972 * 23 22 21 42 42 H 1.07999 * 120.88261 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1240 -2.8860 2.3841 7 6 3.4523 -3.5039 2.3817 8 6 3.3736 -4.8616 1.7324 9 1 2.4286 -5.2274 1.3586 10 6 4.5080 -5.6363 1.6148 11 7 5.6587 -5.1907 2.0696 12 14 4.4105 -7.3190 0.8093 13 1 4.6523 -7.1841 -0.6496 14 1 5.4394 -8.2114 1.4012 15 1 3.0625 -7.8990 1.0362 16 6 1.3516 -2.9529 3.4865 17 8 0.2103 -2.5358 3.4553 18 6 1.8925 -3.5336 4.7341 19 6 2.8755 -4.5233 4.6875 20 7 3.3590 -5.0428 5.7963 21 6 2.9421 -4.6577 6.9871 22 6 1.9673 -3.6787 7.1212 23 8 1.5464 -3.2914 8.3542 24 6 1.4273 -3.0997 5.9802 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6052 -0.2616 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 2.0699 -2.6549 0.3004 35 1 0.5490 -2.2723 1.1422 36 1 4.1451 -2.8740 1.8238 37 1 3.8048 -3.6117 3.4075 38 1 6.4567 -5.7360 1.9872 39 1 3.2436 -4.8663 3.7318 40 1 3.3664 -5.1104 7.8711 41 1 2.0517 -2.5574 8.7298 42 1 0.6671 -2.3360 6.0528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176321828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:45 Heat of formation + Delta-G solvation = -56.754749 kcal Electronic energy + Delta-G solvation = -23848.630570 eV Core-core repulsion = 20407.587627 eV Total energy + Delta-G solvation = -3441.042942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.93811 -40.36450 -38.20373 -37.88642 -36.63045 -34.59007 -33.44288 -31.76410 -30.15463 -29.09503 -28.00326 -25.94780 -25.19472 -24.30266 -23.75482 -20.98759 -20.76907 -19.35237 -18.62459 -18.37023 -17.89221 -17.46717 -16.78156 -16.41850 -16.32621 -16.12178 -15.58930 -14.91060 -14.75761 -14.51936 -14.45782 -14.29332 -14.25845 -13.98443 -13.69989 -13.15509 -12.93860 -12.83086 -12.73985 -12.54712 -12.28015 -12.16954 -11.96076 -11.88155 -11.61610 -11.54598 -11.42389 -11.15156 -10.93262 -10.69435 -10.28327 -9.80385 -9.53094 -8.26091 -6.42980 -0.34219 0.08286 1.41959 1.45610 1.53882 1.75337 2.11305 2.39366 2.69668 3.00998 3.08730 3.44808 3.73386 3.78858 3.92057 3.94695 3.96018 4.07008 4.30188 4.34726 4.55266 4.60009 4.68744 4.73467 4.80089 4.86727 4.91316 4.94778 5.02615 5.09920 5.13250 5.14019 5.16629 5.32107 5.47023 5.49982 5.55420 5.63185 5.74345 5.93791 6.44060 6.69034 6.71799 6.93228 7.13582 7.30630 8.77780 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.007014 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.325906 B = 3990.879735 C = 6484.862342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.117 4.117 5 C 0.115 3.885 6 N -0.586 5.586 7 C 0.224 3.776 8 C -0.558 4.558 9 H 0.057 0.943 10 C 0.036 3.964 11 N -0.900 5.900 12 Si 0.952 3.048 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.557 3.443 17 O -0.584 6.584 18 C -0.189 4.189 19 C 0.096 3.904 20 N -0.494 5.494 21 C 0.094 3.906 22 C 0.051 3.949 23 O -0.488 6.488 24 C -0.057 4.057 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.055 0.945 38 H 0.272 0.728 39 H 0.208 0.792 40 H 0.193 0.807 41 H 0.414 0.586 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.036 8.539 3.636 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.156 4.156 5 C -0.007 4.007 6 N -0.314 5.314 7 C 0.103 3.897 8 C -0.596 4.596 9 H 0.075 0.925 10 C -0.167 4.167 11 N -0.537 5.537 12 Si 0.777 3.223 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.198 1.198 16 C 0.346 3.654 17 O -0.467 6.467 18 C -0.194 4.194 19 C -0.059 4.059 20 N -0.204 5.204 21 C -0.064 4.064 22 C 0.004 3.996 23 O -0.300 6.300 24 C -0.084 4.084 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.224 0.776 40 H 0.210 0.790 41 H 0.274 0.726 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.170 7.654 3.494 9.391 hybrid contribution -0.067 0.040 -0.277 0.288 sum -4.237 7.694 3.216 9.354 Atomic orbital electron populations 1.21856 0.94825 1.01563 1.01965 1.21049 0.96234 0.96782 0.96932 1.21790 1.00935 0.94894 1.02222 1.21897 1.00638 0.94180 0.98848 1.21574 0.99801 0.92360 0.86949 1.48115 1.18371 1.52685 1.12270 1.19969 0.78633 0.92232 0.98830 1.21518 0.95224 1.02190 1.40675 0.92488 1.25591 0.94620 1.01488 0.95035 1.69985 0.99919 1.39068 1.44706 0.85636 0.78072 0.79649 0.78937 1.19562 1.20414 1.19765 1.18248 0.84849 0.78410 0.83937 1.90649 1.18535 1.52149 1.85407 1.20978 1.01647 1.02186 0.94583 1.25287 0.89761 0.90647 1.00177 1.67983 1.27005 1.26730 0.98667 1.23948 0.92096 0.93751 0.96620 1.19157 0.96798 0.98119 0.85532 1.84803 1.60681 1.57022 1.27482 1.22072 0.97557 0.98335 0.90406 0.93441 0.93301 0.91105 0.90625 0.92756 0.91160 0.92928 0.93158 0.92410 0.90300 0.90780 0.95924 0.92812 0.91834 0.77604 0.79043 0.72600 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.95 71.98 0.64 -2.76 16 2 C -0.09 -2.24 2.92 -10.79 -0.03 -2.27 16 3 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 4 C -0.12 -3.66 5.01 30.59 0.15 -3.51 16 5 C 0.12 4.25 5.21 86.38 0.45 4.70 16 6 N -0.59 -25.08 2.46 -829.56 -2.04 -27.13 16 7 C 0.22 10.54 4.64 85.63 0.40 10.93 16 8 C -0.56 -28.16 7.47 25.60 0.19 -27.97 16 9 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 10 C 0.04 1.85 5.32 84.65 0.45 2.30 16 11 N -0.90 -47.57 13.29 21.44 0.28 -47.28 16 12 Si 0.95 40.90 29.54 68.60 2.03 42.92 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 C 0.56 24.33 7.48 86.79 0.65 24.98 16 17 O -0.58 -26.91 16.31 -3.87 -0.06 -26.97 16 18 C -0.19 -7.70 5.59 -20.00 -0.11 -7.81 16 19 C 0.10 4.17 8.68 85.04 0.74 4.91 16 20 N -0.49 -19.60 10.34 -194.39 -2.01 -21.61 16 21 C 0.09 2.88 11.13 84.82 0.94 3.82 16 22 C 0.05 1.46 6.73 22.56 0.15 1.61 16 23 O -0.49 -10.44 13.52 -92.68 -1.25 -11.69 16 24 C -0.06 -1.92 9.68 22.83 0.22 -1.70 16 25 H 0.05 1.22 6.57 -2.39 -0.02 1.20 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.91 8.07 -2.38 -0.02 2.89 16 35 H 0.07 2.77 5.77 -2.39 -0.01 2.76 16 36 H 0.02 1.12 8.13 -2.39 -0.02 1.10 16 37 H 0.05 2.66 4.11 -2.39 -0.01 2.65 16 38 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 39 H 0.21 10.15 2.99 -2.91 -0.01 10.14 16 40 H 0.19 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.41 4.31 9.06 -74.06 -0.67 3.64 16 42 H 0.15 4.73 7.98 -2.91 -0.02 4.71 16 Total: -1.00 -61.94 346.78 2.82 -59.12 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.37 Total: 27.66 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.51 Total: 4.98 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.77 Total: -96.02 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.32 Total: -38.67 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -61.94 2.82 -59.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176321828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.365 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds