Wall clock time and date at job start Tue Mar 31 2020 07:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46611 * 2 1 4 4 C 1.52991 * 109.47367 * 239.99702 * 2 1 3 5 5 N 1.46501 * 109.46883 * 119.99200 * 2 1 3 6 6 C 1.34778 * 119.99866 * 60.01163 * 5 2 1 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 5 2 8 8 N 1.34769 * 119.99808 * 179.97438 * 6 5 2 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08994 * 109.47271 * 300.00031 * 1 2 3 26 26 H 1.08998 * 109.47134 * 60.00585 * 1 2 3 27 27 H 1.09005 * 109.46458 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46927 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46836 * 299.99296 * 3 2 1 30 30 H 1.08994 * 109.47328 * 60.00004 * 3 2 1 31 31 H 1.08993 * 109.47320 * 300.00113 * 4 2 1 32 32 H 1.08998 * 109.47227 * 59.99770 * 4 2 1 33 33 H 1.08996 * 109.47123 * 179.97438 * 4 2 1 34 34 H 0.96996 * 120.00042 * 239.99569 * 5 2 1 35 35 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 37 37 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0184 -0.6905 1.1963 6 6 1.6929 -1.9808 1.4096 7 8 0.9937 -2.5717 0.6094 8 7 2.1425 -2.6161 2.5098 9 6 1.7883 -4.0187 2.7420 10 6 2.4130 -4.4878 4.0306 11 6 1.7212 -4.3563 5.2209 12 6 2.2907 -4.7858 6.4035 13 6 3.5599 -5.3497 6.3966 14 8 4.1221 -5.7733 7.5573 15 6 3.3531 -5.7242 8.6637 16 1 2.3678 -5.2844 8.6174 17 6 3.8273 -6.2383 9.8610 18 7 5.0274 -6.7744 9.9173 19 14 2.7616 -6.1709 11.3936 20 1 1.9369 -7.4030 11.4778 21 1 3.6285 -6.0724 12.5953 22 1 1.8721 -4.9836 11.3263 23 6 4.2546 -5.4746 5.2007 24 6 3.6773 -5.0484 4.0207 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7208 -1.2493 34 1 2.5760 -0.2190 1.8347 35 1 2.7006 -2.1449 3.1480 36 1 2.1572 -4.6279 1.9169 37 1 0.7045 -4.1136 2.8076 38 1 0.7341 -3.9181 5.2255 39 1 1.7497 -4.6832 7.3325 40 1 5.3592 -7.1337 10.7549 41 1 5.2435 -5.9086 5.1927 42 1 4.2152 -5.1494 3.0897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176577892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:20 Heat of formation + Delta-G solvation = -42.257264 kcal Electronic energy + Delta-G solvation = -22510.516187 eV Core-core repulsion = 19070.101903 eV Total energy + Delta-G solvation = -3440.414284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -40.28566 -39.13341 -37.29962 -36.46550 -34.27836 -32.45565 -31.92133 -30.27485 -29.47675 -27.60205 -27.36906 -25.86533 -24.66110 -22.05258 -21.50738 -20.60965 -19.76678 -18.41026 -18.06241 -17.05019 -16.25606 -15.44615 -14.95795 -14.82392 -14.69536 -14.51830 -14.29197 -13.98093 -13.67875 -13.57933 -13.38343 -12.86634 -12.78251 -12.61967 -12.35041 -12.25641 -12.06570 -11.78471 -11.66507 -11.40733 -11.29096 -11.23556 -10.93989 -10.77861 -10.68905 -10.49066 -9.83330 -9.43126 -9.21747 -8.91496 -8.72941 -8.28324 -7.32950 -6.53433 -4.12314 2.03728 2.13110 2.87737 3.08454 3.09681 3.13794 3.30099 3.90002 4.23504 4.53371 4.64694 4.72852 4.87767 5.01069 5.16857 5.25463 5.28329 5.40820 5.45923 5.56057 5.58301 5.62244 5.67543 5.78108 5.81812 5.83131 5.96064 6.12039 6.17666 6.25680 6.35727 6.56476 6.60064 6.67594 6.80640 6.92526 7.02546 7.16495 7.28215 7.35094 7.71645 7.91348 8.11880 8.70558 8.91974 9.60277 10.64151 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033389 B = 0.002532 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.406232 B =11055.192276 C =11297.681669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.187 3.813 3 C -0.155 4.155 4 C -0.164 4.164 5 N -0.744 5.744 6 C 0.703 3.297 7 O -0.593 6.593 8 N -0.740 5.740 9 C 0.199 3.801 10 C -0.214 4.214 11 C -0.050 4.050 12 C -0.237 4.237 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.393 4.393 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.196 4.196 24 C -0.054 4.054 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.394 0.606 35 H 0.396 0.604 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 13.353 -15.349 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.100 3.900 3 C -0.212 4.212 4 C -0.222 4.222 5 N -0.400 5.400 6 C 0.403 3.597 7 O -0.472 6.472 8 N -0.395 5.395 9 C 0.076 3.924 10 C -0.215 4.215 11 C -0.069 4.069 12 C -0.257 4.257 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.215 4.215 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.230 0.770 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.603 12.582 -15.847 20.997 hybrid contribution 0.026 0.505 1.506 1.589 sum -5.577 13.088 -14.341 20.201 Atomic orbital electron populations 1.22253 0.94476 1.04236 1.01248 1.20110 0.94179 0.91081 0.84582 1.22087 1.01572 0.94688 1.02892 1.22247 1.00746 1.03075 0.96127 1.45356 1.57100 1.11166 1.26424 1.16025 0.80319 0.81218 0.82116 1.90833 1.42867 1.66597 1.46886 1.45552 1.56046 1.13746 1.24121 1.19799 0.98722 0.79447 0.94465 1.19237 0.97230 1.11128 0.93910 1.20647 0.98047 0.96529 0.91678 1.21160 0.97508 1.08227 0.98771 1.19443 0.91150 0.91396 0.87456 1.83977 1.39062 1.71584 1.13005 1.21356 0.99661 1.40880 0.85056 0.88927 1.25320 0.96729 0.95765 0.98663 1.70033 1.16164 1.35759 1.27439 0.85693 0.78944 0.79103 0.79598 1.19780 1.20196 1.19147 1.20214 1.01537 1.09401 0.90354 1.20539 0.93923 0.96225 0.96571 0.92972 0.92251 0.90006 0.92003 0.90918 0.92003 0.90007 0.92259 0.92966 0.77278 0.77028 0.91811 0.91853 0.87415 0.85450 0.91879 0.86404 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.40 37.16 0.31 -1.29 16 2 C 0.19 1.69 1.06 -131.82 -0.14 1.55 16 3 C -0.15 -0.97 8.59 37.16 0.32 -0.65 16 4 C -0.16 -1.59 8.40 37.15 0.31 -1.28 16 5 N -0.74 -7.35 5.11 -52.42 -0.27 -7.62 16 6 C 0.70 9.27 7.98 -86.92 -0.69 8.57 16 7 O -0.59 -9.68 12.55 5.29 0.07 -9.62 16 8 N -0.74 -9.27 5.55 -66.42 -0.37 -9.63 16 9 C 0.20 2.80 5.80 -5.19 -0.03 2.77 16 10 C -0.21 -3.41 5.25 -104.58 -0.55 -3.96 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 12 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 13 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 14 O -0.17 -4.81 9.76 0.05 0.00 -4.81 16 15 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 19 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 24 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.39 2.98 8.49 -40.82 -0.35 2.64 16 35 H 0.40 4.38 8.48 -40.82 -0.35 4.03 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -31.00 348.94 -7.73 -38.74 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.10 Total: 8.98 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.05 Total: -12.38 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.12 Total: -41.16 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.07 Total: -14.42 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.00 -7.73 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176577892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.521 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds