Wall clock time and date at job start Tue Mar 31 2020 07:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46611 * 2 1 4 4 C 1.52991 * 109.47367 * 239.99702 * 2 1 3 5 5 N 1.46501 * 109.46883 * 119.99200 * 2 1 3 6 6 C 1.34778 * 119.99866 * 60.01163 * 5 2 1 7 7 O 1.21584 * 119.99654 * 359.97438 * 6 5 2 8 8 N 1.34769 * 119.99808 * 179.97438 * 6 5 2 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08994 * 109.47271 * 300.00031 * 1 2 3 26 26 H 1.08998 * 109.47134 * 60.00585 * 1 2 3 27 27 H 1.09005 * 109.46458 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46927 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46836 * 299.99296 * 3 2 1 30 30 H 1.08994 * 109.47328 * 60.00004 * 3 2 1 31 31 H 1.08993 * 109.47320 * 300.00113 * 4 2 1 32 32 H 1.08998 * 109.47227 * 59.99770 * 4 2 1 33 33 H 1.08996 * 109.47123 * 179.97438 * 4 2 1 34 34 H 0.96996 * 120.00042 * 239.99569 * 5 2 1 35 35 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 37 37 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 38 38 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 40 40 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 42 42 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0184 -0.6905 1.1963 6 6 1.6929 -1.9808 1.4096 7 8 0.9937 -2.5717 0.6094 8 7 2.1425 -2.6161 2.5098 9 6 1.7883 -4.0187 2.7420 10 6 2.4130 -4.4878 4.0306 11 6 1.7212 -4.3563 5.2209 12 6 2.2907 -4.7858 6.4035 13 6 3.5599 -5.3497 6.3966 14 8 4.1221 -5.7733 7.5573 15 6 3.3531 -5.7242 8.6637 16 1 2.3678 -5.2844 8.6174 17 6 3.8273 -6.2383 9.8610 18 7 5.0274 -6.7744 9.9173 19 14 2.7616 -6.1709 11.3936 20 1 1.9369 -7.4030 11.4778 21 1 3.6285 -6.0724 12.5953 22 1 1.8721 -4.9836 11.3263 23 6 4.2546 -5.4746 5.2007 24 6 3.6773 -5.0484 4.0207 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7208 -1.2493 34 1 2.5760 -0.2190 1.8347 35 1 2.7006 -2.1449 3.1480 36 1 2.1572 -4.6279 1.9169 37 1 0.7045 -4.1136 2.8076 38 1 0.7341 -3.9181 5.2255 39 1 1.7497 -4.6832 7.3325 40 1 5.3592 -7.1337 10.7549 41 1 5.2435 -5.9086 5.1927 42 1 4.2152 -5.1494 3.0897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176577892.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:17 Heat of formation + Delta-G solvation = -63.287623 kcal Electronic energy + Delta-G solvation = -22511.428132 eV Core-core repulsion = 19070.101903 eV Total energy + Delta-G solvation = -3441.326229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.30354 -40.74915 -38.68961 -37.59223 -35.49968 -34.29361 -32.96690 -31.82699 -30.84054 -28.18885 -28.13166 -27.63902 -26.14115 -23.64178 -22.58880 -22.00361 -20.63682 -19.87855 -19.39398 -18.81232 -17.22462 -16.66083 -16.37556 -16.11662 -15.97407 -15.88477 -15.51339 -15.28496 -15.07974 -14.86768 -14.41893 -14.32704 -14.22861 -13.69853 -13.40003 -13.19794 -13.01314 -12.95284 -12.91165 -12.53991 -12.49370 -12.35287 -12.23089 -12.10564 -12.04369 -11.97929 -11.20303 -10.91837 -10.77372 -10.21835 -9.81666 -9.68639 -9.01243 -8.48465 -6.16630 0.53749 0.58002 1.35900 1.44113 1.52869 1.90397 2.17100 2.27564 2.81033 3.13148 3.45747 3.50194 3.89382 3.95215 4.03861 4.07683 4.17913 4.20647 4.48320 4.57350 4.72079 4.75797 4.78117 4.81502 4.86656 4.91699 5.00234 5.05047 5.06334 5.14628 5.24858 5.27097 5.36904 5.47033 5.52755 5.61875 5.69281 5.76529 5.77018 6.01445 6.12227 6.17281 6.96432 7.20942 7.71558 7.75791 8.74420 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033389 B = 0.002532 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.406232 B =11055.192276 C =11297.681669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 C -0.147 4.147 4 C -0.160 4.160 5 N -0.732 5.732 6 C 0.700 3.300 7 O -0.625 6.625 8 N -0.735 5.735 9 C 0.206 3.794 10 C -0.180 4.180 11 C -0.045 4.045 12 C -0.243 4.243 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.414 4.414 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.204 4.204 24 C -0.043 4.043 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.407 0.593 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.138 0.862 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.115 0.885 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 15.678 -17.078 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 C -0.205 4.205 4 C -0.218 4.218 5 N -0.388 5.388 6 C 0.400 3.600 7 O -0.506 6.506 8 N -0.390 5.390 9 C 0.082 3.918 10 C -0.182 4.182 11 C -0.064 4.064 12 C -0.263 4.263 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.175 1.175 23 C -0.224 4.224 24 C -0.061 4.061 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.241 0.759 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.058 14.968 -17.623 24.175 hybrid contribution 0.388 -0.093 1.620 1.668 sum -6.671 14.875 -16.003 22.845 Atomic orbital electron populations 1.22205 0.95069 1.02321 1.02280 1.20303 0.93801 0.92621 0.83805 1.22040 1.02058 0.92404 1.03985 1.22197 1.00876 1.01399 0.97376 1.45310 1.56550 1.10063 1.26914 1.16156 0.80073 0.82056 0.81721 1.90834 1.44288 1.67587 1.47925 1.45299 1.56242 1.13102 1.24388 1.19656 0.98635 0.80450 0.93044 1.19506 0.96271 1.07992 0.94401 1.20930 0.99181 0.95570 0.90670 1.21241 0.96743 1.08354 0.99927 1.19992 0.92794 0.92737 0.87344 1.83947 1.40630 1.74623 1.14307 1.21833 1.00251 1.41227 0.85655 0.87915 1.26583 0.98155 0.95193 1.02034 1.70176 1.18588 1.38464 1.28467 0.84594 0.77116 0.79731 0.74845 1.18950 1.19648 1.17536 1.20444 1.01652 1.09658 0.90605 1.20872 0.94155 0.94580 0.96534 0.92669 0.90543 0.93268 0.91193 0.89566 0.91227 0.93260 0.90558 0.92619 0.75717 0.75936 0.91415 0.91663 0.84430 0.86197 0.91794 0.86682 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.40 71.98 0.60 -2.22 16 2 C 0.18 2.81 1.06 3.60 0.00 2.81 16 3 C -0.15 -1.31 8.59 71.98 0.62 -0.70 16 4 C -0.16 -2.80 8.40 71.98 0.60 -2.20 16 5 N -0.73 -12.52 5.11 -438.01 -2.24 -14.76 16 6 C 0.70 16.84 7.98 179.06 1.43 18.27 16 7 O -0.62 -19.58 12.55 -3.98 -0.05 -19.63 16 8 N -0.73 -16.13 5.55 -482.31 -2.68 -18.81 16 9 C 0.21 5.12 5.80 85.63 0.50 5.62 16 10 C -0.18 -5.22 5.25 -19.84 -0.10 -5.33 16 11 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 12 C -0.24 -10.02 9.17 22.39 0.21 -9.81 16 13 C 0.12 5.82 6.65 22.58 0.15 5.97 16 14 O -0.23 -13.39 9.76 -22.72 -0.22 -13.62 16 15 C -0.41 -23.48 9.49 67.92 0.64 -22.84 16 16 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 17 C -0.02 -1.22 5.49 84.84 0.47 -0.75 16 18 N -0.92 -55.52 13.67 21.62 0.30 -55.23 16 19 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 23 C -0.20 -8.21 9.99 22.39 0.22 -7.98 16 24 C -0.04 -1.34 9.69 22.25 0.22 -1.12 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.21 6.16 -2.38 -0.01 1.20 16 28 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.05 1.21 6.16 -2.39 -0.01 1.19 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.41 4.84 8.49 -92.71 -0.79 4.05 16 35 H 0.41 7.55 8.48 -92.71 -0.79 6.77 16 36 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 37 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.12 5.05 5.64 -2.91 -0.02 5.04 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -72.16 348.94 2.38 -69.78 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.53 Total: 29.79 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 5.77 Total: -21.51 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.62 Total: -88.79 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.27 Total: -33.25 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -72.16 2.38 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176577892.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.490 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds