Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47290 * 2 1 4 4 C 1.50704 * 109.47230 * 120.00174 * 2 1 3 5 5 C 1.35345 * 126.37576 * 324.68887 * 4 2 1 6 6 C 1.41547 * 105.50078 * 179.97438 * 5 4 2 7 7 C 1.47574 * 126.52588 * 180.13010 * 6 5 4 8 8 O 1.21493 * 119.99864 * 1.70579 * 7 6 5 9 9 O 1.34732 * 120.00123 * 181.70600 * 7 6 5 10 10 C 1.45201 * 117.00111 * 185.49857 * 9 7 6 11 11 C 1.52996 * 109.47374 * 179.65850 * 10 9 7 12 12 C 1.50702 * 115.54700 * 305.78088 * 11 10 9 13 13 H 1.08005 * 119.99961 * 144.66729 * 12 11 10 14 14 C 1.37878 * 120.00035 * 324.65566 * 12 11 10 15 15 N 1.31509 * 119.99932 * 345.37112 * 14 12 11 16 16 Si 1.86802 * 119.99799 * 165.36948 * 14 12 11 17 17 H 1.48507 * 109.46984 * 90.00596 * 16 14 12 18 18 H 1.48501 * 109.46915 * 210.00080 * 16 14 12 19 19 H 1.48494 * 109.47389 * 330.00373 * 16 14 12 20 20 C 1.53001 * 117.50011 * 160.11061 * 11 10 9 21 21 C 1.52998 * 117.49957 * 91.44484 * 11 10 9 22 22 N 1.31864 * 106.95027 * 0.33963 * 6 5 4 23 23 N 1.28469 * 110.06038 * 359.78821 * 22 6 5 24 24 C 1.46506 * 124.87559 * 179.97438 * 23 22 6 25 25 H 1.09003 * 109.47006 * 299.99910 * 1 2 3 26 26 H 1.09000 * 109.47595 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46954 * 59.99765 * 1 2 3 28 28 H 1.09003 * 109.47006 * 240.00090 * 2 1 3 29 29 H 1.08999 * 109.47367 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47314 * 300.00014 * 3 2 1 31 31 H 1.08994 * 109.47220 * 59.99963 * 3 2 1 32 32 H 1.08001 * 127.25086 * 359.97438 * 5 4 2 33 33 H 1.08997 * 109.47159 * 299.65907 * 10 9 7 34 34 H 1.09007 * 109.47075 * 59.65892 * 10 9 7 35 35 H 0.97007 * 119.99787 * 185.07489 * 15 14 12 36 36 H 1.08994 * 117.50175 * 359.97438 * 20 11 10 37 37 H 1.08998 * 117.49753 * 145.02236 * 20 11 10 38 38 H 1.08997 * 117.50202 * 214.97931 * 21 11 10 39 39 H 1.09000 * 117.49806 * 359.97438 * 21 11 10 40 40 H 1.09005 * 109.46756 * 270.00046 * 24 23 22 41 41 H 1.09000 * 109.47220 * 29.99811 * 24 23 22 42 42 H 1.08995 * 109.46968 * 149.99930 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4615 -0.6916 2.4575 6 6 2.2901 -1.4995 3.2726 7 6 2.0913 -1.7981 4.7041 8 8 1.1213 -1.3568 5.2876 9 8 2.9854 -2.5600 5.3639 10 6 2.6647 -2.9148 6.7349 11 6 3.7847 -3.7825 7.3124 12 6 4.1339 -5.0106 6.5119 13 1 5.1587 -5.3475 6.4592 14 6 3.1451 -5.7043 5.8470 15 7 1.8806 -5.4819 6.1319 16 14 3.6016 -6.9601 4.5416 17 1 3.7667 -8.2937 5.1739 18 1 2.5252 -7.0263 3.5206 19 1 4.8755 -6.5588 3.8926 20 6 3.8896 -3.8787 8.8358 21 6 4.9227 -3.0705 8.0465 22 7 3.2760 -1.9307 2.5105 23 7 3.1396 -1.4788 1.3158 24 6 4.0542 -1.7565 0.2055 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.5630 -0.1700 2.7526 33 1 2.5638 -2.0078 7.3308 34 1 1.7269 -3.4701 6.7566 35 1 1.1882 -6.0208 5.7182 36 1 3.1611 -3.3235 9.4266 37 1 4.2117 -4.8301 9.2590 38 1 5.9239 -3.4907 7.9508 39 1 4.8738 -1.9839 8.1175 40 1 4.8359 -0.9972 0.1801 41 1 4.5061 -2.7387 0.3440 42 1 3.5012 -1.7402 -0.7336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177630291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = 14.532186 kcal Electronic energy + Delta-G solvation = -23693.593100 eV Core-core repulsion = 20255.641391 eV Total energy + Delta-G solvation = -3437.951709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.59024 -39.14921 -36.63015 -35.94156 -34.89545 -33.40621 -32.07758 -29.63039 -27.88931 -27.42142 -26.32411 -25.25719 -23.29630 -22.55334 -21.16037 -20.26241 -19.18095 -19.09530 -17.21797 -16.51956 -16.30621 -16.24145 -15.23491 -15.08059 -14.69874 -14.48021 -14.07298 -13.86753 -13.66510 -13.33772 -13.07335 -12.78726 -12.66846 -12.39351 -11.93482 -11.87631 -11.78684 -11.53496 -11.45621 -11.11496 -10.89061 -10.76321 -10.51574 -10.43609 -10.26224 -10.00948 -9.45171 -9.35529 -9.06312 -8.95864 -8.82591 -8.67314 -8.01370 -5.99346 -3.98980 1.83029 2.20171 2.51215 3.32380 3.39952 3.46174 3.57338 3.83322 4.30677 4.42877 4.44375 4.58617 4.82121 4.96284 5.02819 5.07669 5.20227 5.27883 5.36638 5.44687 5.52851 5.57618 5.60654 5.75682 5.80983 5.88894 5.97000 6.11022 6.13850 6.27886 6.48682 6.57295 6.69535 6.72181 6.83525 6.90709 7.03948 7.32749 7.45786 7.56041 7.96746 8.08475 8.42748 8.74574 8.94507 9.59521 11.04139 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.004695 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.389428 B = 5962.107716 C = 6634.388474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.021 4.021 3 C -0.144 4.144 4 C 0.008 3.992 5 C -0.173 4.173 6 C 0.010 3.990 7 C 0.546 3.454 8 O -0.519 6.519 9 O -0.310 6.310 10 C 0.113 3.887 11 C 0.050 3.950 12 C -0.482 4.482 13 H 0.062 0.938 14 C 0.078 3.922 15 N -0.881 5.881 16 Si 0.893 3.107 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.192 4.192 21 C -0.209 4.209 22 N -0.227 5.227 23 N -0.284 5.284 24 C 0.086 3.914 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.161 0.839 33 H 0.030 0.970 34 H 0.111 0.889 35 H 0.262 0.738 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 11.328 -15.043 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 C -0.201 4.201 4 C -0.115 4.115 5 C -0.200 4.200 6 C -0.148 4.148 7 C 0.388 3.612 8 O -0.408 6.408 9 O -0.223 6.223 10 C 0.040 3.960 11 C 0.050 3.950 12 C -0.519 4.519 13 H 0.080 0.920 14 C -0.125 4.125 15 N -0.519 5.519 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.230 4.230 21 C -0.246 4.246 22 N -0.062 5.062 23 N -0.073 5.073 24 C -0.055 4.055 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.179 0.821 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.361 10.725 -14.978 18.426 hybrid contribution -0.493 -0.282 -0.523 0.772 sum -0.132 10.443 -15.502 18.692 Atomic orbital electron populations 1.21834 0.93115 1.02700 1.02512 1.19639 0.96733 0.95324 0.92436 1.21850 1.01073 0.94643 1.02572 1.21303 0.91392 1.00900 0.97952 1.21396 1.02965 1.04669 0.91005 1.20995 0.96299 1.04255 0.93280 1.19547 0.80633 0.76150 0.84876 1.90767 1.30305 1.51764 1.68000 1.86632 1.45001 1.61066 1.29595 1.22842 1.02316 0.95262 0.75574 1.18846 0.91885 0.94963 0.89341 1.20369 0.94067 1.08801 1.28689 0.92008 1.24887 0.94724 0.96829 0.96050 1.69813 0.99653 1.39564 1.42821 0.86572 0.78501 0.80850 0.82044 1.20812 1.21226 1.19557 1.22966 1.01896 1.00519 0.97605 1.22956 0.95593 0.96542 1.09549 1.73900 1.22918 1.18634 0.90788 1.45446 1.19212 1.34559 1.08067 1.22137 0.92864 1.04570 0.85916 0.91661 0.92080 0.91902 0.90271 0.92708 0.91844 0.91789 0.82147 0.95207 0.87088 0.92771 0.91482 0.89790 0.90345 0.91304 0.89738 0.88255 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.79 37.15 0.33 -0.84 16 2 C -0.02 -0.18 3.09 -91.77 -0.28 -0.47 16 3 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 4 C 0.01 0.10 5.83 -82.21 -0.48 -0.38 16 5 C -0.17 -2.82 9.96 -39.35 -0.39 -3.21 16 6 C 0.01 0.20 7.17 -82.78 -0.59 -0.39 16 7 C 0.55 13.12 7.96 34.54 0.27 13.39 16 8 O -0.52 -12.91 16.71 -19.26 -0.32 -13.23 16 9 O -0.31 -8.14 9.91 -40.58 -0.40 -8.54 16 10 C 0.11 2.96 4.62 37.16 0.17 3.13 16 11 C 0.05 1.31 2.10 -155.66 -0.33 0.99 16 12 C -0.48 -13.67 8.76 -34.44 -0.30 -13.97 16 13 H 0.06 1.74 7.86 -52.48 -0.41 1.32 16 14 C 0.08 2.21 5.15 -17.82 -0.09 2.12 16 15 N -0.88 -25.55 10.94 55.43 0.61 -24.94 16 16 Si 0.89 22.04 29.57 -169.99 -5.03 17.02 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.19 -4.46 9.96 -26.69 -0.27 -4.72 16 21 C -0.21 -4.76 9.92 -26.69 -0.26 -5.02 16 22 N -0.23 -4.43 11.99 33.41 0.40 -4.03 16 23 N -0.28 -4.11 3.70 -63.85 -0.24 -4.35 16 24 C 0.09 0.77 11.11 59.85 0.66 1.43 16 25 H 0.06 0.55 7.35 -51.93 -0.38 0.17 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.54 6.86 -51.93 -0.36 0.19 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.16 2.36 7.48 -52.49 -0.39 1.97 16 33 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 34 H 0.11 3.17 6.09 -51.93 -0.32 2.85 16 35 H 0.26 7.30 8.32 -40.82 -0.34 6.97 16 36 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 0.53 6.88 -51.93 -0.36 0.18 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -33.85 356.16 -7.25 -41.10 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.42 Total: 0.28 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.22 Total: -8.66 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.77 Total: -33.33 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.72 Total: -21.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.85 -7.25 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177630291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.633 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds