Wall clock time and date at job start Tue Mar 31 2020 06:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47290 * 2 1 4 4 C 1.50704 * 109.47230 * 120.00174 * 2 1 3 5 5 C 1.35345 * 126.37576 * 324.68887 * 4 2 1 6 6 C 1.41547 * 105.50078 * 179.97438 * 5 4 2 7 7 C 1.47574 * 126.52588 * 180.13010 * 6 5 4 8 8 O 1.21493 * 119.99864 * 1.70579 * 7 6 5 9 9 O 1.34732 * 120.00123 * 181.70600 * 7 6 5 10 10 C 1.45201 * 117.00111 * 185.49857 * 9 7 6 11 11 C 1.52996 * 109.47374 * 179.65850 * 10 9 7 12 12 C 1.50702 * 115.54700 * 305.78088 * 11 10 9 13 13 H 1.08005 * 119.99961 * 144.66729 * 12 11 10 14 14 C 1.37878 * 120.00035 * 324.65566 * 12 11 10 15 15 N 1.31509 * 119.99932 * 345.37112 * 14 12 11 16 16 Si 1.86802 * 119.99799 * 165.36948 * 14 12 11 17 17 H 1.48507 * 109.46984 * 90.00596 * 16 14 12 18 18 H 1.48501 * 109.46915 * 210.00080 * 16 14 12 19 19 H 1.48494 * 109.47389 * 330.00373 * 16 14 12 20 20 C 1.53001 * 117.50011 * 160.11061 * 11 10 9 21 21 C 1.52998 * 117.49957 * 91.44484 * 11 10 9 22 22 N 1.31864 * 106.95027 * 0.33963 * 6 5 4 23 23 N 1.28469 * 110.06038 * 359.78821 * 22 6 5 24 24 C 1.46506 * 124.87559 * 179.97438 * 23 22 6 25 25 H 1.09003 * 109.47006 * 299.99910 * 1 2 3 26 26 H 1.09000 * 109.47595 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46954 * 59.99765 * 1 2 3 28 28 H 1.09003 * 109.47006 * 240.00090 * 2 1 3 29 29 H 1.08999 * 109.47367 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47314 * 300.00014 * 3 2 1 31 31 H 1.08994 * 109.47220 * 59.99963 * 3 2 1 32 32 H 1.08001 * 127.25086 * 359.97438 * 5 4 2 33 33 H 1.08997 * 109.47159 * 299.65907 * 10 9 7 34 34 H 1.09007 * 109.47075 * 59.65892 * 10 9 7 35 35 H 0.97007 * 119.99787 * 185.07489 * 15 14 12 36 36 H 1.08994 * 117.50175 * 359.97438 * 20 11 10 37 37 H 1.08998 * 117.49753 * 145.02236 * 20 11 10 38 38 H 1.08997 * 117.50202 * 214.97931 * 21 11 10 39 39 H 1.09000 * 117.49806 * 359.97438 * 21 11 10 40 40 H 1.09005 * 109.46756 * 270.00046 * 24 23 22 41 41 H 1.09000 * 109.47220 * 29.99811 * 24 23 22 42 42 H 1.08995 * 109.46968 * 149.99930 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.4615 -0.6916 2.4575 6 6 2.2901 -1.4995 3.2726 7 6 2.0913 -1.7981 4.7041 8 8 1.1213 -1.3568 5.2876 9 8 2.9854 -2.5600 5.3639 10 6 2.6647 -2.9148 6.7349 11 6 3.7847 -3.7825 7.3124 12 6 4.1339 -5.0106 6.5119 13 1 5.1587 -5.3475 6.4592 14 6 3.1451 -5.7043 5.8470 15 7 1.8806 -5.4819 6.1319 16 14 3.6016 -6.9601 4.5416 17 1 3.7667 -8.2937 5.1739 18 1 2.5252 -7.0263 3.5206 19 1 4.8755 -6.5588 3.8926 20 6 3.8896 -3.8787 8.8358 21 6 4.9227 -3.0705 8.0465 22 7 3.2760 -1.9307 2.5105 23 7 3.1396 -1.4788 1.3158 24 6 4.0542 -1.7565 0.2055 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.5630 -0.1700 2.7526 33 1 2.5638 -2.0078 7.3308 34 1 1.7269 -3.4701 6.7566 35 1 1.1882 -6.0208 5.7182 36 1 3.1611 -3.3235 9.4266 37 1 4.2117 -4.8301 9.2590 38 1 5.9239 -3.4907 7.9508 39 1 4.8738 -1.9839 8.1175 40 1 4.8359 -0.9972 0.1801 41 1 4.5061 -2.7387 0.3440 42 1 3.5012 -1.7402 -0.7336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177630291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:36 Heat of formation + Delta-G solvation = -5.236863 kcal Electronic energy + Delta-G solvation = -23694.450350 eV Core-core repulsion = 20255.641391 eV Total energy + Delta-G solvation = -3438.808959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.82859 -41.04287 -38.56395 -36.85345 -36.70745 -34.53785 -34.20513 -30.76042 -29.31198 -28.03598 -27.99554 -27.30261 -24.65544 -23.60445 -23.00539 -21.58243 -21.13612 -20.53080 -18.67133 -18.20868 -17.93804 -17.59604 -16.97805 -16.85585 -16.46498 -15.61958 -15.46641 -15.07160 -14.86179 -14.70674 -14.04493 -13.95748 -13.86169 -13.60374 -13.51615 -13.40039 -12.97679 -12.86276 -12.81843 -12.62866 -12.38668 -12.14923 -12.10640 -11.92270 -11.76202 -11.75384 -11.46196 -11.31822 -11.13532 -10.66716 -10.22790 -10.05526 -10.01663 -8.12276 -6.17761 0.28406 1.01634 1.34368 1.38746 1.40661 1.48889 1.95823 2.14460 2.38867 2.99956 3.28931 3.45281 3.58704 3.87098 4.02851 4.17961 4.18615 4.29327 4.32550 4.38527 4.40489 4.52530 4.59016 4.62062 4.67372 4.73120 4.84973 4.89785 4.95392 5.00311 5.01635 5.14762 5.15511 5.22922 5.36072 5.40212 5.43568 5.50322 5.64454 5.78944 5.81890 6.31695 6.65866 6.78466 6.98542 7.42576 8.89820 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.004695 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.389428 B = 5962.107716 C = 6634.388474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.018 4.018 3 C -0.141 4.141 4 C 0.034 3.966 5 C -0.189 4.189 6 C -0.032 4.032 7 C 0.538 3.462 8 O -0.542 6.542 9 O -0.328 6.328 10 C 0.122 3.878 11 C 0.008 3.992 12 C -0.499 4.499 13 H 0.056 0.944 14 C 0.034 3.966 15 N -0.907 5.907 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.268 1.268 20 C -0.180 4.180 21 C -0.187 4.187 22 N -0.264 5.264 23 N -0.272 5.272 24 C 0.069 3.931 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.167 0.833 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.260 0.740 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 12.314 -17.886 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.199 4.199 4 C -0.090 4.090 5 C -0.216 4.216 6 C -0.187 4.187 7 C 0.383 3.617 8 O -0.432 6.432 9 O -0.242 6.242 10 C 0.048 3.952 11 C 0.007 3.993 12 C -0.537 4.537 13 H 0.074 0.926 14 C -0.166 4.166 15 N -0.545 5.545 16 Si 0.772 3.228 17 H -0.193 1.193 18 H -0.215 1.215 19 H -0.193 1.193 20 C -0.218 4.218 21 C -0.224 4.224 22 N -0.102 5.102 23 N -0.061 5.061 24 C -0.069 4.069 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.185 0.815 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.200 11.706 -17.814 21.350 hybrid contribution -0.712 -0.516 0.254 0.916 sum 0.487 11.190 -17.559 20.828 Atomic orbital electron populations 1.21868 0.92668 1.02309 1.03479 1.19911 0.97016 0.95885 0.90958 1.21848 1.01233 0.93532 1.03290 1.21990 0.89718 0.98868 0.98453 1.21594 1.03377 1.04867 0.91778 1.20817 0.98771 1.07200 0.91954 1.20197 0.79969 0.75216 0.86332 1.90716 1.30925 1.52621 1.68941 1.86631 1.46040 1.61852 1.29675 1.22609 1.01196 0.95161 0.76211 1.18984 0.94006 0.95384 0.90897 1.20618 0.93798 1.09697 1.29537 0.92581 1.25553 0.94659 0.98779 0.97615 1.69950 1.00321 1.40460 1.43725 0.85718 0.77984 0.79392 0.79679 1.19349 1.21523 1.19293 1.22964 1.02169 1.00938 0.95712 1.22978 0.95047 0.97472 1.06915 1.73783 1.23402 1.20193 0.92856 1.45992 1.19756 1.32901 1.07479 1.22713 0.93455 1.05263 0.85495 0.92624 0.93172 0.89109 0.87127 0.92474 0.89130 0.93153 0.81547 0.94344 0.90100 0.93079 0.89907 0.89743 0.89583 0.89516 0.87250 0.88681 0.84800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.79 71.98 0.63 -1.30 16 2 C -0.02 -0.24 3.09 -11.54 -0.04 -0.28 16 3 C -0.14 -1.57 9.18 71.98 0.66 -0.91 16 4 C 0.03 0.85 5.83 41.40 0.24 1.09 16 5 C -0.19 -6.21 9.96 22.42 0.22 -5.99 16 6 C -0.03 -1.37 7.17 42.42 0.30 -1.06 16 7 C 0.54 27.25 7.96 70.29 0.56 27.81 16 8 O -0.54 -28.41 16.71 19.86 0.33 -28.08 16 9 O -0.33 -18.01 9.91 -56.42 -0.56 -18.57 16 10 C 0.12 6.60 4.62 71.98 0.33 6.93 16 11 C 0.01 0.41 2.10 -52.93 -0.11 0.30 16 12 C -0.50 -28.80 8.76 25.60 0.22 -28.57 16 13 H 0.06 3.19 7.86 -2.91 -0.02 3.17 16 14 C 0.03 1.97 5.15 84.66 0.44 2.41 16 15 N -0.91 -54.28 10.94 21.45 0.23 -54.04 16 16 Si 0.95 45.87 29.57 68.60 2.03 47.90 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 20 C -0.18 -8.27 9.96 30.62 0.30 -7.97 16 21 C -0.19 -8.34 9.92 30.62 0.30 -8.04 16 22 N -0.26 -10.44 11.99 -48.22 -0.58 -11.02 16 23 N -0.27 -7.43 3.70 -355.92 -1.32 -8.74 16 24 C 0.07 1.00 11.11 127.77 1.42 2.42 16 25 H 0.05 0.85 7.35 -2.39 -0.02 0.83 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.11 0.89 6.86 -2.39 -0.02 0.87 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.17 5.04 7.48 -2.91 -0.02 5.02 16 33 H 0.04 1.95 8.05 -2.39 -0.02 1.93 16 34 H 0.08 4.86 6.09 -2.38 -0.01 4.84 16 35 H 0.26 14.98 8.32 -92.70 -0.77 14.20 16 36 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 37 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16 38 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.13 0.85 6.88 -2.39 -0.02 0.84 16 Total: -1.00 -77.19 356.16 6.64 -70.55 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.01 Total: 15.17 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 5.49 Total: -13.15 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.66 Total: -73.80 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.23 Total: -46.65 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.19 6.64 -70.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177630291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.309 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds