Wall clock time and date at job start Tue Mar 31 2020 06:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46785 * 2 1 4 4 C 1.50699 * 109.47110 * 119.99531 * 2 1 3 5 5 C 1.38011 * 119.51452 * 275.00060 * 4 2 1 6 6 C 1.39936 * 119.13380 * 180.02562 * 5 4 2 7 7 C 1.48152 * 120.89397 * 179.97438 * 6 5 4 8 8 O 1.21514 * 120.00393 * 0.02965 * 7 6 5 9 9 N 1.34781 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99946 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46869 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47148 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00259 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00256 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00010 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47043 * 89.99972 * 17 15 13 19 19 H 1.48497 * 109.47341 * 209.99630 * 17 15 13 20 20 H 1.48502 * 109.47185 * 329.99867 * 17 15 13 21 21 C 1.39616 * 118.21192 * 0.02562 * 6 5 4 22 22 C 1.38849 * 118.95108 * 0.27311 * 21 6 5 23 23 O 1.35682 * 119.62260 * 179.70057 * 22 21 6 24 24 N 1.31883 * 119.50791 * 95.02542 * 4 2 1 25 25 H 1.08995 * 109.47038 * 300.00066 * 1 2 3 26 26 H 1.09001 * 109.46892 * 60.00079 * 1 2 3 27 27 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47490 * 240.00119 * 2 1 3 29 29 H 1.08999 * 109.47010 * 59.99825 * 3 2 1 30 30 H 1.09000 * 109.46992 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47341 * 299.99646 * 3 2 1 32 32 H 1.08002 * 120.43866 * 0.02562 * 5 4 2 33 33 H 0.96996 * 119.99850 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.47209 * 300.00454 * 10 9 7 35 35 H 1.09007 * 109.47091 * 59.99873 * 10 9 7 36 36 H 1.09001 * 109.47475 * 299.99721 * 11 10 9 37 37 H 1.09001 * 109.47429 * 60.00447 * 11 10 9 38 38 H 1.09004 * 109.47434 * 299.99837 * 12 11 10 39 39 H 1.09004 * 109.47552 * 60.00152 * 12 11 10 40 40 H 0.96998 * 120.00300 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.52082 * 179.97438 * 21 6 5 42 42 H 0.96698 * 114.00037 * 90.00240 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1602 -0.0120 2.4140 6 6 2.6280 -0.6793 3.5516 7 6 2.7808 0.0324 4.8420 8 8 2.4981 1.2114 4.9228 9 7 3.2334 -0.6279 5.9263 10 6 3.3841 0.0757 7.2024 11 6 3.9108 -0.8952 8.2610 12 6 4.0675 -0.1605 9.5939 13 6 4.5857 -1.1169 10.6369 14 1 4.7839 -2.1459 10.3751 15 6 4.8079 -0.6783 11.9249 16 7 5.2596 -1.5132 12.8353 17 14 4.4657 1.1015 12.3776 18 1 3.0606 1.2333 12.8399 19 1 5.3859 1.5214 13.4648 20 1 4.6785 1.9645 11.1880 21 6 2.9477 -2.0336 3.4376 22 6 2.7955 -2.6589 2.2073 23 8 3.1080 -3.9730 2.0797 24 7 2.3436 -1.9899 1.1603 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.9028 1.0358 2.4617 33 1 3.4594 -1.5690 5.8617 34 1 4.0883 0.8991 7.0825 35 1 2.4170 0.4678 7.5175 36 1 3.2069 -1.7188 8.3812 37 1 4.8779 -1.2869 7.9458 38 1 4.7712 0.6633 9.4742 39 1 3.1002 0.2309 9.9091 40 1 5.4156 -1.2047 13.7415 41 1 3.3123 -2.5849 4.2918 42 1 2.3695 -4.5718 2.2559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181224338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:33 Heat of formation + Delta-G solvation = -63.659702 kcal Electronic energy + Delta-G solvation = -22308.828825 eV Core-core repulsion = 18867.486461 eV Total energy + Delta-G solvation = -3441.342363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.21561 -39.46909 -37.87477 -35.70794 -35.42843 -33.56210 -32.86006 -31.42464 -29.82610 -27.64803 -27.42238 -24.98160 -24.38141 -22.67803 -21.64957 -20.75945 -19.89206 -18.76775 -17.63875 -17.37390 -16.75888 -16.01263 -15.85652 -15.54660 -15.41389 -14.96832 -14.71704 -14.25286 -14.19579 -13.86779 -13.61439 -12.96440 -12.81990 -12.74085 -12.33660 -12.22770 -12.11940 -11.99014 -11.79392 -11.55052 -11.25856 -11.16484 -10.94983 -10.53557 -10.21900 -10.11662 -9.96241 -9.81223 -9.63352 -9.27755 -9.20837 -9.05383 -8.59366 -6.09978 -4.09172 0.35509 0.57772 2.60568 2.96828 3.13422 3.28211 3.36158 3.39715 3.43240 3.96324 4.30177 4.40810 4.56209 4.58032 4.63678 4.76125 4.77044 5.02440 5.20223 5.23872 5.25609 5.32181 5.43029 5.46776 5.48477 5.54867 5.58767 5.75368 5.84528 5.90743 5.91988 6.04268 6.17265 6.35099 6.55703 6.70066 7.08350 7.16223 7.29838 7.38741 7.50576 7.71443 8.03375 8.45881 8.93463 9.51961 11.03175 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.002663 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.251012 B =10510.812689 C =11396.378104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C -0.152 4.152 4 C 0.157 3.843 5 C -0.125 4.125 6 C -0.064 4.064 7 C 0.552 3.448 8 O -0.530 6.530 9 N -0.714 5.714 10 C 0.113 3.887 11 C -0.114 4.114 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.161 4.161 22 C 0.313 3.687 23 O -0.478 6.478 24 N -0.489 5.489 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.264 0.736 41 H 0.147 0.853 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 0.500 -26.334 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.209 4.209 4 C 0.019 3.981 5 C -0.145 4.145 6 C -0.075 4.075 7 C 0.338 3.662 8 O -0.407 6.407 9 N -0.365 5.365 10 C -0.010 4.010 11 C -0.152 4.152 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.183 4.183 22 C 0.134 3.866 23 O -0.285 6.285 24 N -0.208 5.208 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.236 0.764 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.165 0.835 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -8.647 1.048 -26.918 28.292 hybrid contribution -0.243 0.372 1.365 1.435 sum -8.890 1.420 -25.553 27.093 Atomic orbital electron populations 1.21825 0.93251 1.02424 1.02541 1.20109 0.96450 0.95555 0.94416 1.21977 1.01627 0.94502 1.02829 1.20955 0.94112 0.88180 0.94858 1.22152 0.98499 1.02400 0.91482 1.20378 0.98811 0.93385 0.94945 1.18102 0.78130 0.86644 0.83370 1.90785 1.49872 1.15188 1.84850 1.46108 1.65663 1.14381 1.10380 1.21766 1.01711 0.96171 0.81305 1.21729 1.00546 0.97829 0.95130 1.19503 0.96735 0.96563 0.92067 1.21079 1.43959 0.97669 0.93420 0.90992 1.25030 0.94484 0.97541 0.96411 1.69909 1.45765 1.35146 1.03269 0.86774 0.78383 0.85689 0.78443 1.20230 1.21338 1.18895 1.22340 1.02339 0.95029 0.98620 1.18936 0.94042 0.86070 0.87546 1.84817 1.39059 1.12140 1.92530 1.66825 1.11479 1.09792 1.32728 0.92193 0.91552 0.92263 0.88881 0.91687 0.92136 0.91456 0.82840 0.76423 0.91325 0.91325 0.91995 0.91941 0.96245 0.96688 0.92651 0.83513 0.73979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 2 C -0.05 -0.35 3.23 -91.77 -0.30 -0.64 16 3 C -0.15 -0.98 8.62 37.16 0.32 -0.66 16 4 C 0.16 1.57 5.79 -82.65 -0.48 1.09 16 5 C -0.12 -1.34 8.74 -39.03 -0.34 -1.68 16 6 C -0.06 -0.74 5.91 -104.68 -0.62 -1.36 16 7 C 0.55 7.72 7.80 -12.19 -0.10 7.62 16 8 O -0.53 -9.11 16.44 5.35 0.09 -9.02 16 9 N -0.71 -9.37 5.51 -61.15 -0.34 -9.71 16 10 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 11 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 12 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 13 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 14 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 17 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 21 C -0.16 -1.60 9.55 -38.84 -0.37 -1.97 16 22 C 0.31 3.25 7.74 -17.16 -0.13 3.12 16 23 O -0.48 -4.20 13.56 -18.75 -0.25 -4.45 16 24 N -0.49 -5.45 10.27 -9.60 -0.10 -5.55 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.15 1.57 5.98 -52.49 -0.31 1.25 16 33 H 0.40 4.21 6.61 -40.82 -0.27 3.94 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.15 1.15 6.53 -52.49 -0.34 0.80 16 42 H 0.40 1.49 9.06 45.56 0.41 1.90 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -34.15 351.77 -7.01 -41.16 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.43 Total: 1.03 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.38 Total: -8.84 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.34 Total: -41.93 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.17 Total: -13.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.15 -7.01 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181224338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.503 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds