Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46785 * 2 1 4 4 C 1.50699 * 109.47110 * 119.99531 * 2 1 3 5 5 C 1.38011 * 119.51452 * 275.00060 * 4 2 1 6 6 C 1.39936 * 119.13380 * 180.02562 * 5 4 2 7 7 C 1.48152 * 120.89397 * 179.97438 * 6 5 4 8 8 O 1.21514 * 120.00393 * 0.02965 * 7 6 5 9 9 N 1.34781 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99946 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46938 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46869 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47148 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99916 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00259 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00256 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00010 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47043 * 89.99972 * 17 15 13 19 19 H 1.48497 * 109.47341 * 209.99630 * 17 15 13 20 20 H 1.48502 * 109.47185 * 329.99867 * 17 15 13 21 21 C 1.39616 * 118.21192 * 0.02562 * 6 5 4 22 22 C 1.38849 * 118.95108 * 0.27311 * 21 6 5 23 23 O 1.35682 * 119.62260 * 179.70057 * 22 21 6 24 24 N 1.31883 * 119.50791 * 95.02542 * 4 2 1 25 25 H 1.08995 * 109.47038 * 300.00066 * 1 2 3 26 26 H 1.09001 * 109.46892 * 60.00079 * 1 2 3 27 27 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47490 * 240.00119 * 2 1 3 29 29 H 1.08999 * 109.47010 * 59.99825 * 3 2 1 30 30 H 1.09000 * 109.46992 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47341 * 299.99646 * 3 2 1 32 32 H 1.08002 * 120.43866 * 0.02562 * 5 4 2 33 33 H 0.96996 * 119.99850 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.47209 * 300.00454 * 10 9 7 35 35 H 1.09007 * 109.47091 * 59.99873 * 10 9 7 36 36 H 1.09001 * 109.47475 * 299.99721 * 11 10 9 37 37 H 1.09001 * 109.47429 * 60.00447 * 11 10 9 38 38 H 1.09004 * 109.47434 * 299.99837 * 12 11 10 39 39 H 1.09004 * 109.47552 * 60.00152 * 12 11 10 40 40 H 0.96998 * 120.00300 * 180.02562 * 16 15 13 41 41 H 1.08002 * 120.52082 * 179.97438 * 21 6 5 42 42 H 0.96698 * 114.00037 * 90.00240 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1602 -0.0120 2.4140 6 6 2.6280 -0.6793 3.5516 7 6 2.7808 0.0324 4.8420 8 8 2.4981 1.2114 4.9228 9 7 3.2334 -0.6279 5.9263 10 6 3.3841 0.0757 7.2024 11 6 3.9108 -0.8952 8.2610 12 6 4.0675 -0.1605 9.5939 13 6 4.5857 -1.1169 10.6369 14 1 4.7839 -2.1459 10.3751 15 6 4.8079 -0.6783 11.9249 16 7 5.2596 -1.5132 12.8353 17 14 4.4657 1.1015 12.3776 18 1 3.0606 1.2333 12.8399 19 1 5.3859 1.5214 13.4648 20 1 4.6785 1.9645 11.1880 21 6 2.9477 -2.0336 3.4376 22 6 2.7955 -2.6589 2.2073 23 8 3.1080 -3.9730 2.0797 24 7 2.3436 -1.9899 1.1603 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4427 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.9028 1.0358 2.4617 33 1 3.4594 -1.5690 5.8617 34 1 4.0883 0.8991 7.0825 35 1 2.4170 0.4678 7.5175 36 1 3.2069 -1.7188 8.3812 37 1 4.8779 -1.2869 7.9458 38 1 4.7712 0.6633 9.4742 39 1 3.1002 0.2309 9.9091 40 1 5.4156 -1.2047 13.7415 41 1 3.3123 -2.5849 4.2918 42 1 2.3695 -4.5718 2.2559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181224338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -90.153054 kcal Electronic energy + Delta-G solvation = -22309.977663 eV Core-core repulsion = 18867.486461 eV Total energy + Delta-G solvation = -3442.491201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04740 -40.53130 -38.55461 -37.09164 -36.09844 -35.22080 -33.98067 -33.06167 -30.58179 -29.14558 -28.05795 -26.07652 -25.25095 -24.07828 -22.50899 -22.19880 -20.97217 -19.58283 -18.98281 -18.34089 -18.23547 -16.89484 -16.86629 -16.71127 -16.47381 -16.10552 -15.71148 -15.53869 -15.23178 -14.83075 -14.76227 -14.46772 -13.85810 -13.72760 -13.56260 -13.43905 -12.89792 -12.85480 -12.75282 -12.71588 -12.39802 -12.09306 -11.99991 -11.81673 -11.80214 -11.61034 -11.40309 -11.32885 -11.08559 -10.76103 -10.56352 -10.22309 -9.95317 -8.29246 -6.33289 -0.51255 -0.17605 1.37274 1.39184 1.50586 1.63961 1.90603 2.36472 2.39581 2.60823 3.06678 3.24551 3.43251 3.79638 3.84092 3.97360 4.03641 4.15370 4.18002 4.21328 4.32412 4.47694 4.57116 4.61169 4.78138 4.83158 4.86693 4.88673 4.95118 4.99331 5.02680 5.14851 5.25065 5.32741 5.37810 5.39132 5.46825 5.55053 5.64933 6.27145 6.33948 6.53259 6.75088 6.78031 6.97124 7.31668 8.87109 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.002663 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.251012 B =10510.812689 C =11396.378104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C -0.150 4.150 4 C 0.156 3.844 5 C -0.130 4.130 6 C -0.075 4.075 7 C 0.555 3.445 8 O -0.566 6.566 9 N -0.705 5.705 10 C 0.125 3.875 11 C -0.102 4.102 12 C -0.012 4.012 13 C -0.530 4.530 14 H 0.037 0.963 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.947 3.053 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.246 1.246 21 C -0.156 4.156 22 C 0.310 3.690 23 O -0.485 6.485 24 N -0.505 5.505 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.414 0.586 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.266 0.734 41 H 0.167 0.833 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 1.347 -27.895 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.207 4.207 4 C 0.018 3.982 5 C -0.151 4.151 6 C -0.085 4.085 7 C 0.342 3.658 8 O -0.445 6.445 9 N -0.357 5.357 10 C 0.002 3.998 11 C -0.140 4.140 12 C -0.050 4.050 13 C -0.568 4.568 14 H 0.056 0.944 15 C -0.193 4.193 16 N -0.592 5.592 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.170 1.170 21 C -0.178 4.178 22 C 0.132 3.868 23 O -0.296 6.296 24 N -0.225 5.225 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.252 0.748 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.185 0.815 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -9.465 1.850 -28.502 30.089 hybrid contribution 0.022 -0.037 1.796 1.796 sum -9.443 1.813 -26.706 28.384 Atomic orbital electron populations 1.21807 0.92306 1.02239 1.03315 1.20196 0.97150 0.95836 0.93257 1.21971 1.01192 0.93932 1.03608 1.21315 0.93474 0.87938 0.95450 1.22237 0.98607 1.02596 0.91617 1.20203 1.00345 0.94062 0.93935 1.18378 0.77170 0.86231 0.84003 1.90764 1.51504 1.16786 1.85473 1.45908 1.65366 1.14992 1.09424 1.21435 1.01272 0.95412 0.81712 1.21503 1.01127 0.97873 0.93492 1.19470 0.96592 0.95901 0.93081 1.21467 1.43332 0.97214 0.94830 0.94417 1.25996 0.94455 1.02403 0.96474 1.70060 1.47652 1.37590 1.03859 0.85696 0.78519 0.80023 0.78656 1.19228 1.21211 1.16966 1.22465 1.01689 0.94340 0.99268 1.19074 0.93566 0.86703 0.87494 1.84771 1.40503 1.11767 1.92519 1.66902 1.12003 1.10301 1.33265 0.92464 0.89741 0.92905 0.88790 0.91932 0.92810 0.89654 0.82727 0.74795 0.91812 0.91566 0.91461 0.91639 0.95995 0.96012 0.92539 0.81520 0.71504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 71.98 0.66 -0.90 16 2 C -0.05 -0.62 3.23 -11.54 -0.04 -0.66 16 3 C -0.15 -1.72 8.62 71.99 0.62 -1.10 16 4 C 0.16 2.96 5.79 42.50 0.25 3.21 16 5 C -0.13 -2.68 8.74 22.63 0.20 -2.48 16 6 C -0.07 -1.63 5.91 -19.90 -0.12 -1.75 16 7 C 0.56 14.87 7.80 86.88 0.68 15.55 16 8 O -0.57 -19.07 16.44 -3.76 -0.06 -19.13 16 9 N -0.71 -17.27 5.51 -465.66 -2.57 -19.84 16 10 C 0.12 3.71 5.67 86.38 0.49 4.20 16 11 C -0.10 -3.49 5.27 30.59 0.16 -3.33 16 12 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 13 C -0.53 -29.55 9.66 25.60 0.25 -29.31 16 14 H 0.04 2.29 7.99 -2.91 -0.02 2.26 16 15 C 0.00 0.20 5.47 84.65 0.46 0.67 16 16 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 17 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 21 C -0.16 -2.82 9.55 22.75 0.22 -2.60 16 22 C 0.31 5.95 7.74 84.78 0.66 6.60 16 23 O -0.49 -7.57 13.56 -90.00 -1.22 -8.79 16 24 N -0.50 -10.61 10.27 -297.17 -3.05 -13.67 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 0.75 6.48 -2.39 -0.02 0.74 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.16 3.09 5.98 -2.91 -0.02 3.07 16 33 H 0.41 7.79 6.61 -92.71 -0.61 7.18 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 39 H 0.02 0.93 7.57 -2.38 -0.02 0.91 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.17 2.19 6.53 -2.91 -0.02 2.18 16 42 H 0.42 2.25 9.06 -74.06 -0.67 1.58 16 Total: -1.00 -73.44 351.77 -0.41 -73.85 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -0.29 Total: 12.96 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.60 Total: -12.33 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -5.32 Total: -92.13 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.28 Total: -27.92 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -73.44 -0.41 -73.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181224338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.301 kcal (2) G-P(sol) polarization free energy of solvation -73.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds