Wall clock time and date at job start Tue Mar 31 2020 07:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 C 1.52996 * 109.47138 * 120.00446 * 2 1 3 5 5 N 1.46900 * 109.47735 * 60.95814 * 4 2 1 6 6 C 1.46903 * 110.99869 * 73.41329 * 5 4 2 7 7 C 1.50697 * 109.47683 * 279.63141 * 6 5 4 8 8 H 1.08007 * 119.99632 * 2.95123 * 7 6 5 9 9 C 1.37871 * 120.00390 * 182.95500 * 7 6 5 10 10 N 1.31515 * 119.99828 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00188 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47079 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46933 * 119.99938 * 11 9 7 14 14 H 1.48495 * 109.47500 * 240.00094 * 11 9 7 15 15 C 1.46894 * 111.00462 * 197.37007 * 5 4 2 16 16 C 1.50706 * 109.47013 * 66.04844 * 15 5 4 17 17 C 1.38619 * 119.54790 * 95.01952 * 16 15 5 18 18 C 1.38584 * 119.35833 * 179.97438 * 17 16 15 19 19 C 1.38634 * 118.48833 * 359.73267 * 18 17 16 20 20 C 1.39305 * 119.05408 * 0.50812 * 19 18 17 21 21 C 1.48070 * 119.72400 * 179.75373 * 20 19 18 22 22 O 1.21429 * 119.99846 * 359.73006 * 21 20 19 23 23 O 1.34675 * 119.99986 * 179.72684 * 21 20 19 24 24 N 1.31480 * 119.54334 * 274.99982 * 16 15 5 25 25 H 1.08994 * 109.47004 * 59.99781 * 1 2 3 26 26 H 1.09000 * 109.47043 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47041 * 299.99833 * 1 2 3 28 28 H 1.09008 * 109.46812 * 239.99812 * 2 1 3 29 29 H 1.09001 * 109.47142 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47164 * 300.00283 * 3 2 1 31 31 H 1.09002 * 109.46941 * 60.00106 * 3 2 1 32 32 H 1.09006 * 109.47329 * 300.96053 * 4 2 1 33 33 H 1.08993 * 109.47246 * 180.96095 * 4 2 1 34 34 H 1.08999 * 109.46658 * 39.62948 * 6 5 4 35 35 H 1.08998 * 109.46929 * 159.62735 * 6 5 4 36 36 H 0.97001 * 120.00038 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47417 * 306.05127 * 15 5 4 38 38 H 1.08999 * 109.47138 * 186.04498 * 15 5 4 39 39 H 1.07999 * 120.32661 * 359.97438 * 17 16 15 40 40 H 1.07999 * 120.75520 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.47074 * 180.28276 * 19 18 17 42 42 H 0.96704 * 117.00196 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5694 -2.1129 1.2377 6 6 2.3014 -2.9079 0.2426 7 6 1.7225 -2.6566 -1.1258 8 1 0.9253 -1.9388 -1.2514 9 6 2.2104 -3.3430 -2.2175 10 7 3.1814 -4.2167 -2.0646 11 14 1.4923 -3.0320 -3.9136 12 1 0.4194 -2.0097 -3.8171 13 1 2.5609 -2.5433 -4.8216 14 1 0.9259 -4.2953 -4.4507 15 6 1.6744 -2.7152 2.5733 16 6 0.7215 -2.0223 3.5131 17 6 -0.5376 -2.5603 3.7293 18 6 -1.4105 -1.9202 4.5947 19 6 -0.9868 -0.7587 5.2219 20 6 0.2906 -0.2723 4.9535 21 6 0.7563 0.9700 5.6109 22 8 0.0238 1.5630 6.3766 23 8 1.9923 1.4422 5.3597 24 7 1.0960 -0.9161 4.1169 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6627 -0.2176 2.1392 33 1 3.1298 -0.7064 1.2578 34 1 3.3529 -2.6209 0.2505 35 1 2.2119 -3.9665 0.4862 36 1 3.5244 -4.6999 -2.8326 37 1 2.6938 -2.6045 2.9428 38 1 1.4218 -3.7740 2.5153 39 1 -0.8355 -3.4695 3.2283 40 1 -2.3966 -2.3198 4.7800 41 1 -1.6393 -0.2364 5.9059 42 1 2.2515 2.2567 5.8121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232599277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:09 Heat of formation + Delta-G solvation = -52.074702 kcal Electronic energy + Delta-G solvation = -23964.165109 eV Core-core repulsion = 20523.325109 eV Total energy + Delta-G solvation = -3440.840000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83921 -39.57800 -37.35743 -36.23134 -33.96167 -32.85799 -32.59128 -31.44159 -27.60041 -26.50629 -26.41344 -25.36165 -24.05587 -22.37943 -21.43010 -20.57425 -18.99360 -18.42059 -17.45571 -16.48058 -16.25728 -15.91468 -15.81751 -15.21595 -14.64545 -14.34716 -14.18926 -13.70692 -13.50728 -13.29553 -13.03414 -12.65855 -12.45410 -12.18930 -11.90633 -11.70070 -11.66989 -11.54234 -11.24725 -11.03311 -11.00206 -10.67271 -10.54341 -10.17049 -10.13235 -9.94645 -9.89841 -9.69163 -9.28423 -9.08237 -9.02964 -8.37487 -7.27598 -6.01406 -3.99969 0.47119 1.15812 2.33384 2.76860 3.30923 3.39288 3.43437 3.72564 4.13257 4.43748 4.69189 4.88445 4.93462 4.96323 5.06275 5.33582 5.44485 5.53484 5.71866 5.72199 5.78001 5.98895 6.00831 6.08135 6.14734 6.19782 6.27003 6.34054 6.46228 6.48232 6.54137 6.60088 6.75087 6.87595 7.16185 7.21522 7.32051 7.45261 7.60214 7.87125 7.93345 8.10366 8.21550 8.53231 9.07284 9.62235 11.09136 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.004432 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.209475 B = 6315.564670 C = 6813.546497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.070 3.930 5 N -0.527 5.527 6 C 0.193 3.807 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.099 3.901 16 C 0.150 3.850 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.115 4.115 20 C 0.081 3.919 21 C 0.547 3.453 22 O -0.515 6.515 23 O -0.489 6.489 24 N -0.428 5.428 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.022 0.978 34 H -0.005 1.005 35 H 0.028 0.972 36 H 0.259 0.741 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.069 6.480 13.312 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 C -0.200 4.200 4 C -0.058 4.058 5 N -0.252 5.252 6 C 0.068 3.932 7 C -0.539 4.539 8 H 0.096 0.904 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.030 4.030 16 C 0.009 3.991 17 C -0.136 4.136 18 C -0.112 4.112 19 C -0.135 4.135 20 C -0.055 4.055 21 C 0.389 3.611 22 O -0.404 6.404 23 O -0.299 6.299 24 N -0.140 5.140 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.013 0.987 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -5.917 6.519 12.946 15.656 hybrid contribution -0.096 0.322 -0.289 0.443 sum -6.013 6.841 12.657 15.594 Atomic orbital electron populations 1.21628 0.95934 1.02341 0.98498 1.21434 0.95825 0.94037 1.01165 1.21816 1.00437 0.97476 1.00290 1.22102 0.96507 0.89391 0.97838 1.62183 1.58250 1.02423 1.02371 1.19828 0.91375 0.92402 0.89616 1.21436 1.19101 1.22535 0.90877 0.90368 1.24992 0.95266 0.95316 0.99129 1.69967 1.27097 1.26377 1.30500 0.86546 0.79066 0.78078 0.84418 1.19542 1.21231 1.21160 1.21040 0.95314 0.97446 0.89172 1.21519 0.93771 0.90182 0.93585 1.22371 0.93718 1.01134 0.96341 1.21585 1.00205 0.94238 0.95180 1.21979 0.95309 0.96511 0.99740 1.19866 0.92322 0.94695 0.98628 1.20588 0.79214 0.83415 0.77842 1.90881 1.56084 1.58460 1.34927 1.84733 1.32404 1.44989 1.67743 1.67527 1.34883 1.06951 1.04656 0.94681 0.90828 0.95247 0.87191 0.93388 0.93441 0.94039 0.91458 0.95998 0.98742 0.95382 0.93105 0.93682 0.89248 0.83557 0.83806 0.83710 0.73178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.40 37.16 0.31 -2.02 16 2 C -0.11 -2.05 2.40 -90.62 -0.22 -2.27 16 3 C -0.14 -2.36 9.19 37.16 0.34 -2.01 16 4 C 0.07 1.37 4.27 -3.83 -0.02 1.35 16 5 N -0.53 -10.65 3.70 -237.52 -0.88 -11.53 16 6 C 0.19 4.69 4.78 -4.98 -0.02 4.67 16 7 C -0.50 -13.10 7.24 -34.44 -0.25 -13.35 16 8 H 0.08 2.00 4.58 -52.48 -0.24 1.76 16 9 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 11 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.10 1.69 5.24 -4.98 -0.03 1.66 16 16 C 0.15 2.28 5.76 -82.60 -0.48 1.81 16 17 C -0.12 -1.42 9.73 -39.31 -0.38 -1.80 16 18 C -0.09 -0.90 10.17 -39.31 -0.40 -1.30 16 19 C -0.11 -1.34 9.63 -39.04 -0.38 -1.71 16 20 C 0.08 1.14 6.75 -83.03 -0.56 0.58 16 21 C 0.55 7.32 8.32 34.76 0.29 7.61 16 22 O -0.52 -7.43 17.11 -19.21 -0.33 -7.76 16 23 O -0.49 -5.65 13.24 -40.43 -0.54 -6.18 16 24 N -0.43 -6.72 8.22 -6.07 -0.05 -6.77 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.48 6.73 -51.93 -0.35 1.13 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 2.48 5.14 -51.92 -0.27 2.21 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.28 5.55 -51.93 -0.29 0.99 16 33 H 0.02 0.46 7.74 -51.93 -0.40 0.05 16 34 H -0.01 -0.14 7.67 -51.93 -0.40 -0.54 16 35 H 0.03 0.72 7.65 -51.93 -0.40 0.32 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 1.45 7.64 -52.49 -0.40 1.05 16 42 H 0.41 2.49 9.11 45.56 0.42 2.90 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -31.22 346.52 -7.98 -39.20 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.24 Total: 2.30 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -1.88 Total: -5.41 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.19 Total: -43.39 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.86 Total: -13.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.22 -7.98 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232599277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.871 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds