Wall clock time and date at job start Tue Mar 31 2020 07:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 C 1.52996 * 109.47138 * 120.00446 * 2 1 3 5 5 N 1.46900 * 109.47735 * 60.95814 * 4 2 1 6 6 C 1.46903 * 110.99869 * 73.41329 * 5 4 2 7 7 C 1.50697 * 109.47683 * 279.63141 * 6 5 4 8 8 H 1.08007 * 119.99632 * 2.95123 * 7 6 5 9 9 C 1.37871 * 120.00390 * 182.95500 * 7 6 5 10 10 N 1.31515 * 119.99828 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00188 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47079 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46933 * 119.99938 * 11 9 7 14 14 H 1.48495 * 109.47500 * 240.00094 * 11 9 7 15 15 C 1.46894 * 111.00462 * 197.37007 * 5 4 2 16 16 C 1.50706 * 109.47013 * 66.04844 * 15 5 4 17 17 C 1.38619 * 119.54790 * 95.01952 * 16 15 5 18 18 C 1.38584 * 119.35833 * 179.97438 * 17 16 15 19 19 C 1.38634 * 118.48833 * 359.73267 * 18 17 16 20 20 C 1.39305 * 119.05408 * 0.50812 * 19 18 17 21 21 C 1.48070 * 119.72400 * 179.75373 * 20 19 18 22 22 O 1.21429 * 119.99846 * 359.73006 * 21 20 19 23 23 O 1.34675 * 119.99986 * 179.72684 * 21 20 19 24 24 N 1.31480 * 119.54334 * 274.99982 * 16 15 5 25 25 H 1.08994 * 109.47004 * 59.99781 * 1 2 3 26 26 H 1.09000 * 109.47043 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47041 * 299.99833 * 1 2 3 28 28 H 1.09008 * 109.46812 * 239.99812 * 2 1 3 29 29 H 1.09001 * 109.47142 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47164 * 300.00283 * 3 2 1 31 31 H 1.09002 * 109.46941 * 60.00106 * 3 2 1 32 32 H 1.09006 * 109.47329 * 300.96053 * 4 2 1 33 33 H 1.08993 * 109.47246 * 180.96095 * 4 2 1 34 34 H 1.08999 * 109.46658 * 39.62948 * 6 5 4 35 35 H 1.08998 * 109.46929 * 159.62735 * 6 5 4 36 36 H 0.97001 * 120.00038 * 179.97438 * 10 9 7 37 37 H 1.08994 * 109.47417 * 306.05127 * 15 5 4 38 38 H 1.08999 * 109.47138 * 186.04498 * 15 5 4 39 39 H 1.07999 * 120.32661 * 359.97438 * 17 16 15 40 40 H 1.07999 * 120.75520 * 180.02562 * 18 17 16 41 41 H 1.08000 * 120.47074 * 180.28276 * 19 18 17 42 42 H 0.96704 * 117.00196 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.5694 -2.1129 1.2377 6 6 2.3014 -2.9079 0.2426 7 6 1.7225 -2.6566 -1.1258 8 1 0.9253 -1.9388 -1.2514 9 6 2.2104 -3.3430 -2.2175 10 7 3.1814 -4.2167 -2.0646 11 14 1.4923 -3.0320 -3.9136 12 1 0.4194 -2.0097 -3.8171 13 1 2.5609 -2.5433 -4.8216 14 1 0.9259 -4.2953 -4.4507 15 6 1.6744 -2.7152 2.5733 16 6 0.7215 -2.0223 3.5131 17 6 -0.5376 -2.5603 3.7293 18 6 -1.4105 -1.9202 4.5947 19 6 -0.9868 -0.7587 5.2219 20 6 0.2906 -0.2723 4.9535 21 6 0.7563 0.9700 5.6109 22 8 0.0238 1.5630 6.3766 23 8 1.9923 1.4422 5.3597 24 7 1.0960 -0.9161 4.1169 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6627 -0.2176 2.1392 33 1 3.1298 -0.7064 1.2578 34 1 3.3529 -2.6209 0.2505 35 1 2.2119 -3.9665 0.4862 36 1 3.5244 -4.6999 -2.8326 37 1 2.6938 -2.6045 2.9428 38 1 1.4218 -3.7740 2.5153 39 1 -0.8355 -3.4695 3.2283 40 1 -2.3966 -2.3198 4.7800 41 1 -1.6393 -0.2364 5.9059 42 1 2.2515 2.2567 5.8121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232599277.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:09 Heat of formation + Delta-G solvation = -72.225992 kcal Electronic energy + Delta-G solvation = -23965.038935 eV Core-core repulsion = 20523.325109 eV Total energy + Delta-G solvation = -3441.713826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85136 -40.62044 -38.91940 -37.19882 -35.41558 -34.73260 -33.62761 -32.75597 -29.38604 -27.95867 -27.84692 -26.35927 -25.73295 -23.58713 -22.77704 -21.94280 -20.57797 -19.41368 -18.62219 -18.22437 -17.34120 -17.03360 -16.80461 -16.72075 -16.40931 -15.73684 -15.68962 -15.05421 -14.71379 -14.36640 -14.31121 -14.08511 -13.90430 -13.87840 -13.19398 -13.16838 -12.97771 -12.85841 -12.69259 -12.63330 -12.52121 -12.32928 -12.05370 -11.83653 -11.66647 -11.45525 -11.29090 -10.99286 -10.86097 -10.55213 -10.42761 -10.15878 -8.99329 -8.09826 -6.14354 -0.50705 0.18983 1.34279 1.43775 1.46134 1.57782 1.88780 2.45668 2.68475 3.07494 3.22165 3.51214 3.71320 3.94638 4.04396 4.11683 4.17776 4.28222 4.44792 4.48176 4.54310 4.60586 4.74647 4.77819 4.89691 4.90641 5.03696 5.08563 5.10919 5.14113 5.19530 5.24583 5.32321 5.41371 5.42524 5.56584 5.64591 5.78609 5.88428 6.17477 6.41947 6.64879 6.67991 6.99465 7.00543 7.51853 9.01079 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.004432 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.209475 B = 6315.564670 C = 6813.546497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.077 3.923 5 N -0.524 5.524 6 C 0.208 3.792 7 C -0.501 4.501 8 H 0.084 0.916 9 C 0.001 3.999 10 N -0.938 5.938 11 Si 0.954 3.046 12 H -0.260 1.260 13 H -0.286 1.286 14 H -0.282 1.282 15 C 0.100 3.900 16 C 0.129 3.871 17 C -0.114 4.114 18 C -0.069 4.069 19 C -0.106 4.106 20 C 0.059 3.941 21 C 0.550 3.450 22 O -0.530 6.530 23 O -0.495 6.495 24 N -0.454 5.454 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.079 0.921 33 H -0.001 1.001 34 H -0.040 1.040 35 H 0.010 0.990 36 H 0.260 0.740 37 H 0.031 0.969 38 H 0.098 0.902 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.165 0.835 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 7.550 13.897 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.051 4.051 5 N -0.248 5.248 6 C 0.082 3.918 7 C -0.539 4.539 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.580 5.580 11 Si 0.780 3.220 12 H -0.184 1.184 13 H -0.213 1.213 14 H -0.208 1.208 15 C -0.029 4.029 16 C -0.012 4.012 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.126 4.126 20 C -0.077 4.077 21 C 0.393 3.607 22 O -0.420 6.420 23 O -0.308 6.308 24 N -0.167 5.167 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.018 0.982 34 H -0.023 1.023 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.116 0.884 39 H 0.181 0.819 40 H 0.205 0.795 41 H 0.183 0.817 42 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -8.436 7.618 13.552 17.688 hybrid contribution 0.705 0.021 -0.345 0.785 sum -7.731 7.639 13.207 17.104 Atomic orbital electron populations 1.21499 0.94790 1.01404 0.99650 1.21376 0.96761 0.95407 0.99142 1.21743 1.00332 0.95654 1.01628 1.22063 0.95116 0.89210 0.98694 1.62115 1.56865 1.02353 1.03442 1.19488 0.89774 0.91804 0.90730 1.21747 1.18669 1.21892 0.91579 0.89784 1.25797 0.95680 0.95251 1.02920 1.70096 1.28705 1.27708 1.31503 0.85544 0.78437 0.78135 0.79844 1.18389 1.21271 1.20826 1.21031 0.95646 0.98222 0.87991 1.21178 0.94632 0.90965 0.94411 1.22566 0.92680 1.01628 0.96538 1.22034 1.01313 0.93000 0.93111 1.22310 0.94427 0.96612 0.99258 1.20152 0.93353 0.95157 0.99062 1.20553 0.79418 0.83240 0.77470 1.90868 1.56557 1.58936 1.35646 1.84695 1.31685 1.46367 1.68010 1.67346 1.36096 1.07554 1.05673 0.93499 0.92752 0.94003 0.90636 0.93605 0.92009 0.92710 0.90292 0.98243 1.02264 0.97234 0.93159 0.95054 0.88413 0.81943 0.79538 0.81739 0.70695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.40 71.98 0.60 -3.48 16 2 C -0.11 -4.15 2.40 -10.79 -0.03 -4.17 16 3 C -0.14 -4.31 9.19 71.98 0.66 -3.65 16 4 C 0.08 3.09 4.27 86.30 0.37 3.46 16 5 N -0.52 -21.67 3.70 -905.39 -3.35 -25.02 16 6 C 0.21 10.59 4.78 85.56 0.41 11.00 16 7 C -0.50 -26.70 7.24 25.60 0.19 -26.52 16 8 H 0.08 4.33 4.58 -2.91 -0.01 4.31 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.94 -55.38 13.29 21.45 0.28 -55.10 16 11 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.10 3.48 5.24 85.56 0.45 3.93 16 16 C 0.13 3.81 5.76 42.70 0.25 4.06 16 17 C -0.11 -2.53 9.73 22.44 0.22 -2.31 16 18 C -0.07 -1.17 10.17 22.45 0.23 -0.94 16 19 C -0.11 -2.13 9.63 22.62 0.22 -1.91 16 20 C 0.06 1.56 6.75 41.87 0.28 1.84 16 21 C 0.55 13.96 8.32 70.43 0.59 14.55 16 22 O -0.53 -14.40 17.11 20.06 0.34 -14.06 16 23 O -0.50 -10.90 13.24 -55.84 -0.74 -11.64 16 24 N -0.45 -13.94 8.22 -173.11 -1.42 -15.36 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 2.11 6.73 -2.39 -0.02 2.10 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 3.44 5.14 -2.38 -0.01 3.43 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 3.00 5.55 -2.38 -0.01 2.99 16 33 H 0.00 -0.03 7.74 -2.39 -0.02 -0.05 16 34 H -0.04 -2.30 7.67 -2.39 -0.02 -2.32 16 35 H 0.01 0.52 7.65 -2.39 -0.02 0.50 16 36 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 38 H 0.10 3.16 7.70 -2.39 -0.02 3.14 16 39 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.17 2.67 7.64 -2.91 -0.02 2.65 16 42 H 0.43 4.66 9.11 -74.05 -0.67 3.98 16 Total: -1.00 -68.78 346.52 2.40 -66.38 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.36 Total: 13.02 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.89 Total: -3.67 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -4.49 Total: -95.48 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.40 Total: -25.70 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.78 2.40 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232599277.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.847 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds