Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46887 * 2 1 4 4 C 1.50706 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.36354 * 126.51240 * 270.02631 * 4 3 2 6 6 C 1.46715 * 125.80605 * 359.97438 * 5 4 3 7 7 O 1.21713 * 120.00411 * 353.35997 * 6 5 4 8 8 N 1.34780 * 119.99573 * 173.36261 * 6 5 4 9 9 C 1.46507 * 119.99973 * 354.86472 * 8 6 5 10 10 C 1.36866 * 119.99861 * 174.87049 * 8 6 5 11 11 H 1.07997 * 120.00149 * 22.07113 * 10 8 6 12 12 C 1.39017 * 119.99977 * 202.07023 * 10 8 6 13 13 N 1.31386 * 120.00309 * 15.78571 * 12 10 8 14 14 Si 1.86806 * 119.99983 * 195.78472 * 12 10 8 15 15 H 1.48504 * 109.46746 * 94.98643 * 14 12 10 16 16 H 1.48498 * 109.47024 * 214.98438 * 14 12 10 17 17 H 1.48496 * 109.47103 * 334.98704 * 14 12 10 18 18 N 1.37856 * 108.37930 * 179.74383 * 5 4 3 19 19 H 0.96996 * 125.34678 * 180.24142 * 18 5 4 20 20 C 1.34148 * 109.30141 * 0.39003 * 18 5 4 21 21 C 1.50700 * 125.81928 * 179.86621 * 20 18 5 22 22 C 1.38641 * 108.35912 * 359.61303 * 20 18 5 23 23 C 1.46616 * 126.50657 * 180.21739 * 22 20 18 24 24 C 1.50696 * 120.00218 * 274.14264 * 23 22 20 25 25 O 1.21330 * 119.99872 * 94.15048 * 23 22 20 26 26 H 1.09006 * 109.46553 * 299.99702 * 1 2 3 27 27 H 1.08992 * 109.47189 * 60.00079 * 1 2 3 28 28 H 1.08997 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46978 * 239.99637 * 2 1 3 30 30 H 1.08999 * 109.46850 * 120.00143 * 2 1 3 31 31 H 1.08998 * 109.47099 * 60.00112 * 3 2 1 32 32 H 1.08999 * 109.47492 * 299.99749 * 3 2 1 33 33 H 1.08996 * 109.46536 * 85.55506 * 9 8 6 34 34 H 1.09000 * 109.46559 * 205.54971 * 9 8 6 35 35 H 1.08993 * 109.47177 * 325.55582 * 9 8 6 36 36 H 0.96998 * 120.00848 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47633 * 264.76394 * 21 20 18 38 38 H 1.09002 * 109.46860 * 144.76038 * 21 20 18 39 39 H 1.09003 * 109.46892 * 24.76640 * 21 20 18 40 40 H 1.09003 * 109.47153 * 4.99484 * 24 23 22 41 41 H 1.09002 * 109.47084 * 124.99573 * 24 23 22 42 42 H 1.09004 * 109.47167 * 244.99716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3579 1.4422 1.0969 6 6 3.9117 1.4423 2.4945 7 8 2.7293 1.5646 2.7559 8 7 4.8113 1.3070 3.4891 9 6 6.2183 1.0474 3.1738 10 6 4.4103 1.4121 4.7934 11 1 3.3757 1.2465 5.0554 12 6 5.3348 1.7318 5.7812 13 7 6.5036 2.2322 5.4499 14 14 4.9152 1.4501 7.5796 15 1 5.4425 0.1302 8.0099 16 1 5.5290 2.5213 8.4048 17 1 3.4407 1.4747 7.7536 18 7 5.6682 1.4365 0.6684 19 1 6.4474 1.4317 1.2460 20 6 5.6961 1.4418 -0.6728 21 6 6.9362 1.4411 -1.5291 22 6 4.3897 1.4423 -1.1368 23 6 3.9622 1.4430 -2.5392 24 6 3.8329 2.7449 -3.2870 25 8 3.7123 0.3953 -3.0977 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 6.7301 1.9923 2.9920 34 1 6.6896 0.5342 4.0121 35 1 6.2817 0.4225 2.2830 36 1 7.1485 2.4557 6.1391 37 1 7.1854 2.4648 -1.8086 38 1 6.7562 0.8524 -2.4286 39 1 7.7640 1.0055 -0.9694 40 1 4.1811 3.5626 -2.6558 41 1 4.4356 2.7042 -4.1943 42 1 2.7884 2.9098 -3.5517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263815253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = -23.055515 kcal Electronic energy + Delta-G solvation = -24188.038769 eV Core-core repulsion = 20748.457136 eV Total energy + Delta-G solvation = -3439.581634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31018 -38.76449 -37.85798 -35.39068 -34.34143 -32.19089 -31.31437 -31.19607 -29.55848 -27.32617 -26.46933 -26.22127 -24.19807 -22.42901 -21.36782 -20.23528 -18.82200 -18.30780 -17.35904 -16.58385 -15.66067 -15.27113 -14.96221 -14.73192 -14.50722 -14.28156 -14.15167 -13.97476 -13.73107 -13.48953 -12.88314 -12.87029 -12.58491 -12.32967 -12.23951 -12.13125 -11.97519 -11.87671 -11.48734 -11.45629 -11.26483 -10.95469 -10.78623 -10.72562 -10.43533 -10.42188 -10.11880 -9.61206 -9.18095 -8.58820 -8.34390 -7.88697 -7.57324 -6.50993 -3.99587 2.07904 2.12386 2.75178 3.12154 3.18266 3.24060 3.50739 4.01654 4.27356 4.43154 4.77568 4.93536 5.00639 5.17256 5.21938 5.38362 5.45348 5.49189 5.49704 5.60268 5.60735 5.68344 5.77258 5.80478 5.89664 5.97762 6.06134 6.24623 6.31137 6.35328 6.42468 6.42932 6.52130 6.79267 6.82966 6.92055 7.11140 7.33242 7.43190 7.69904 7.75751 8.01457 8.33719 9.02633 9.22881 9.80917 10.54904 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.004965 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.354117 B = 5638.239597 C = 6808.230281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.053 4.053 4 C -0.064 4.064 5 C -0.008 4.008 6 C 0.512 3.488 7 O -0.567 6.567 8 N -0.440 5.440 9 C 0.092 3.908 10 C -0.304 4.304 11 H 0.105 0.895 12 C 0.030 3.970 13 N -0.880 5.880 14 Si 0.929 3.071 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.267 1.267 18 N -0.530 5.530 19 H 0.425 0.575 20 C 0.057 3.943 21 C -0.089 4.089 22 C -0.257 4.257 23 C 0.443 3.557 24 C -0.197 4.197 25 O -0.462 6.462 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.270 0.730 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 0.276 -12.421 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.091 4.091 4 C -0.072 4.072 5 C -0.120 4.120 6 C 0.301 3.699 7 O -0.451 6.451 8 N -0.158 5.158 9 C -0.053 4.053 10 C -0.431 4.431 11 H 0.123 0.877 12 C -0.173 4.173 13 N -0.519 5.519 14 Si 0.755 3.245 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.191 1.191 18 N -0.134 5.134 19 H 0.273 0.727 20 C -0.063 4.063 21 C -0.146 4.146 22 C -0.266 4.266 23 C 0.318 3.682 24 C -0.254 4.254 25 O -0.336 6.336 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.220 -0.159 -12.270 12.332 hybrid contribution 0.685 0.076 1.218 1.399 sum 1.905 -0.083 -11.052 11.216 Atomic orbital electron populations 1.21738 0.96290 1.00961 1.01450 1.21380 0.95048 0.96679 1.01823 1.20143 0.88959 0.97314 1.02679 1.19339 0.94964 1.03831 0.89045 1.20442 0.82122 1.14243 0.95225 1.16892 0.86626 0.84255 0.82141 1.90630 1.15949 1.55955 1.82528 1.43451 1.06262 1.60278 1.05840 1.21847 0.84610 0.99534 0.99260 1.19722 0.97138 1.45471 0.80817 0.87722 1.25360 0.95713 0.95451 1.00795 1.69966 1.07690 1.39754 1.34535 0.85860 0.79232 0.77980 0.81432 1.20321 1.20866 1.19087 1.43020 1.08881 1.55286 1.06191 0.72749 1.20482 0.95002 1.06857 0.84000 1.20392 0.92805 1.02986 0.98429 1.19715 0.92757 1.19755 0.94323 1.21700 0.70522 0.89865 0.86067 1.22241 1.04287 0.97375 1.01529 1.90520 1.37522 1.35803 1.69749 0.92439 0.93388 0.93311 0.92703 0.91753 0.88577 0.92816 0.92613 0.89373 0.95130 0.92002 0.90433 0.90380 0.91229 0.89869 0.89460 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.11 -1.94 5.92 -26.73 -0.16 -2.10 16 3 C -0.05 -0.97 5.04 -27.88 -0.14 -1.11 16 4 C -0.06 -1.23 5.47 -104.04 -0.57 -1.80 16 5 C -0.01 -0.16 6.60 -82.41 -0.54 -0.70 16 6 C 0.51 12.59 7.58 -12.84 -0.10 12.50 16 7 O -0.57 -15.30 14.34 5.18 0.07 -15.23 16 8 N -0.44 -10.98 3.01 -123.68 -0.37 -11.35 16 9 C 0.09 1.92 7.12 59.85 0.43 2.35 16 10 C -0.30 -8.18 9.29 -15.02 -0.14 -8.32 16 11 H 0.11 2.96 7.38 -52.49 -0.39 2.57 16 12 C 0.03 0.77 4.98 -17.45 -0.09 0.68 16 13 N -0.88 -22.29 10.87 55.50 0.60 -21.69 16 14 Si 0.93 20.00 29.58 -169.99 -5.03 14.97 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 N -0.53 -9.01 4.99 -5.55 -0.03 -9.04 16 19 H 0.42 6.61 4.78 -40.82 -0.20 6.41 16 20 C 0.06 0.86 7.22 -81.43 -0.59 0.27 16 21 C -0.09 -0.93 10.20 36.01 0.37 -0.56 16 22 C -0.26 -4.27 5.71 -105.11 -0.60 -4.87 16 23 C 0.44 6.54 6.52 -30.93 -0.20 6.34 16 24 C -0.20 -2.05 10.32 36.00 0.37 -1.68 16 25 O -0.46 -8.10 17.86 5.51 0.10 -8.00 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.10 1.96 6.29 -51.93 -0.33 1.63 16 32 H 0.05 0.85 8.05 -51.93 -0.42 0.44 16 33 H 0.06 1.15 7.36 -51.93 -0.38 0.77 16 34 H 0.09 1.95 6.70 -51.93 -0.35 1.60 16 35 H 0.03 0.55 5.34 -51.93 -0.28 0.27 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.80 7.99 -51.93 -0.41 0.39 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -31.25 347.39 -7.12 -38.36 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.11 Total: 7.51 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.59 Total: -0.77 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.20 Total: -42.08 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.25 -7.12 -38.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263815253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.309 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds