Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46887 * 2 1 4 4 C 1.50706 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.36354 * 126.51240 * 270.02631 * 4 3 2 6 6 C 1.46715 * 125.80605 * 359.97438 * 5 4 3 7 7 O 1.21713 * 120.00411 * 353.35997 * 6 5 4 8 8 N 1.34780 * 119.99573 * 173.36261 * 6 5 4 9 9 C 1.46507 * 119.99973 * 354.86472 * 8 6 5 10 10 C 1.36866 * 119.99861 * 174.87049 * 8 6 5 11 11 H 1.07997 * 120.00149 * 22.07113 * 10 8 6 12 12 C 1.39017 * 119.99977 * 202.07023 * 10 8 6 13 13 N 1.31386 * 120.00309 * 15.78571 * 12 10 8 14 14 Si 1.86806 * 119.99983 * 195.78472 * 12 10 8 15 15 H 1.48504 * 109.46746 * 94.98643 * 14 12 10 16 16 H 1.48498 * 109.47024 * 214.98438 * 14 12 10 17 17 H 1.48496 * 109.47103 * 334.98704 * 14 12 10 18 18 N 1.37856 * 108.37930 * 179.74383 * 5 4 3 19 19 H 0.96996 * 125.34678 * 180.24142 * 18 5 4 20 20 C 1.34148 * 109.30141 * 0.39003 * 18 5 4 21 21 C 1.50700 * 125.81928 * 179.86621 * 20 18 5 22 22 C 1.38641 * 108.35912 * 359.61303 * 20 18 5 23 23 C 1.46616 * 126.50657 * 180.21739 * 22 20 18 24 24 C 1.50696 * 120.00218 * 274.14264 * 23 22 20 25 25 O 1.21330 * 119.99872 * 94.15048 * 23 22 20 26 26 H 1.09006 * 109.46553 * 299.99702 * 1 2 3 27 27 H 1.08992 * 109.47189 * 60.00079 * 1 2 3 28 28 H 1.08997 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46978 * 239.99637 * 2 1 3 30 30 H 1.08999 * 109.46850 * 120.00143 * 2 1 3 31 31 H 1.08998 * 109.47099 * 60.00112 * 3 2 1 32 32 H 1.08999 * 109.47492 * 299.99749 * 3 2 1 33 33 H 1.08996 * 109.46536 * 85.55506 * 9 8 6 34 34 H 1.09000 * 109.46559 * 205.54971 * 9 8 6 35 35 H 1.08993 * 109.47177 * 325.55582 * 9 8 6 36 36 H 0.96998 * 120.00848 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47633 * 264.76394 * 21 20 18 38 38 H 1.09002 * 109.46860 * 144.76038 * 21 20 18 39 39 H 1.09003 * 109.46892 * 24.76640 * 21 20 18 40 40 H 1.09003 * 109.47153 * 4.99484 * 24 23 22 41 41 H 1.09002 * 109.47084 * 124.99573 * 24 23 22 42 42 H 1.09004 * 109.47167 * 244.99716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3579 1.4422 1.0969 6 6 3.9117 1.4423 2.4945 7 8 2.7293 1.5646 2.7559 8 7 4.8113 1.3070 3.4891 9 6 6.2183 1.0474 3.1738 10 6 4.4103 1.4121 4.7934 11 1 3.3757 1.2465 5.0554 12 6 5.3348 1.7318 5.7812 13 7 6.5036 2.2322 5.4499 14 14 4.9152 1.4501 7.5796 15 1 5.4425 0.1302 8.0099 16 1 5.5290 2.5213 8.4048 17 1 3.4407 1.4747 7.7536 18 7 5.6682 1.4365 0.6684 19 1 6.4474 1.4317 1.2460 20 6 5.6961 1.4418 -0.6728 21 6 6.9362 1.4411 -1.5291 22 6 4.3897 1.4423 -1.1368 23 6 3.9622 1.4430 -2.5392 24 6 3.8329 2.7449 -3.2870 25 8 3.7123 0.3953 -3.0977 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 6.7301 1.9923 2.9920 34 1 6.6896 0.5342 4.0121 35 1 6.2817 0.4225 2.2830 36 1 7.1485 2.4557 6.1391 37 1 7.1854 2.4648 -1.8086 38 1 6.7562 0.8524 -2.4286 39 1 7.7640 1.0055 -0.9694 40 1 4.1811 3.5626 -2.6558 41 1 4.4356 2.7042 -4.1943 42 1 2.7884 2.9098 -3.5517 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263815253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = -41.494955 kcal Electronic energy + Delta-G solvation = -24188.838364 eV Core-core repulsion = 20748.457136 eV Total energy + Delta-G solvation = -3440.381228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.72088 -40.18295 -39.47284 -37.12491 -35.93174 -33.92916 -32.67646 -32.50038 -30.58282 -28.81097 -27.98416 -27.79768 -25.87139 -23.77576 -22.75666 -21.74279 -20.29142 -19.66223 -19.17851 -18.23644 -17.24146 -16.66919 -16.48926 -16.14497 -16.00096 -15.83503 -15.53234 -15.35259 -15.09125 -14.83745 -14.38987 -14.18794 -13.89298 -13.74339 -13.46451 -13.33079 -13.15808 -13.10371 -12.99783 -12.91882 -12.68022 -12.58439 -12.42177 -12.16517 -12.10408 -12.06753 -11.58067 -11.09564 -10.80801 -10.45712 -9.86355 -9.68301 -8.99240 -8.45004 -6.02568 0.61670 0.95263 1.35854 1.40007 1.44985 1.52149 2.13235 2.25617 2.45453 2.94466 3.06598 3.39353 3.81035 3.90347 4.05785 4.09378 4.17371 4.24876 4.30946 4.37860 4.53736 4.66971 4.69636 4.71886 4.74991 4.83359 4.86286 4.92843 5.01473 5.04301 5.06420 5.09109 5.18500 5.24251 5.39164 5.42241 5.49535 5.72159 5.85287 6.07860 6.40155 6.47817 6.58915 7.06990 7.31568 7.90396 8.59628 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.004965 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.354117 B = 5638.239597 C = 6808.230281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.053 4.053 4 C -0.064 4.064 5 C -0.052 4.052 6 C 0.504 3.496 7 O -0.608 6.608 8 N -0.457 5.457 9 C 0.104 3.896 10 C -0.344 4.344 11 H 0.075 0.925 12 C 0.003 3.997 13 N -0.891 5.891 14 Si 0.990 3.010 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.276 1.276 18 N -0.526 5.526 19 H 0.430 0.570 20 C 0.088 3.912 21 C -0.090 4.090 22 C -0.279 4.279 23 C 0.448 3.552 24 C -0.190 4.190 25 O -0.494 6.494 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.277 0.723 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 0.748 -14.530 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.091 4.091 4 C -0.072 4.072 5 C -0.164 4.164 6 C 0.295 3.705 7 O -0.494 6.494 8 N -0.175 5.175 9 C -0.040 4.040 10 C -0.472 4.472 11 H 0.093 0.907 12 C -0.200 4.200 13 N -0.530 5.530 14 Si 0.814 3.186 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.201 1.201 18 N -0.130 5.130 19 H 0.278 0.722 20 C -0.034 4.034 21 C -0.147 4.147 22 C -0.287 4.287 23 C 0.325 3.675 24 C -0.246 4.246 25 O -0.370 6.370 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.798 0.322 -14.379 14.652 hybrid contribution 0.246 -0.054 1.758 1.776 sum 3.043 0.269 -12.621 12.985 Atomic orbital electron populations 1.21701 0.94052 1.02137 1.02001 1.21294 0.97038 0.95818 1.00136 1.20132 0.88978 0.97638 1.02330 1.19634 0.95467 1.02267 0.89805 1.19887 0.84195 1.18906 0.93423 1.17482 0.86207 0.83045 0.83769 1.90576 1.17589 1.57500 1.83733 1.43645 1.07734 1.60735 1.05397 1.21800 0.82475 0.99888 0.99826 1.19621 0.96580 1.48345 0.82636 0.90698 1.26050 0.95444 0.94426 1.04064 1.70007 1.07980 1.39105 1.35862 0.84960 0.78391 0.78535 0.76739 1.19037 1.19695 1.20078 1.42910 1.07675 1.55287 1.07174 0.72155 1.21346 0.96515 1.02315 0.83254 1.20652 0.90825 1.05281 0.97967 1.20074 0.92959 1.20610 0.95009 1.22139 0.69114 0.91092 0.85109 1.22247 1.05720 0.94592 1.02057 1.90519 1.39075 1.37364 1.70090 0.93443 0.91216 0.91867 0.92588 0.95007 0.91499 0.90333 0.92464 0.90815 0.92265 0.91318 0.87490 0.89290 0.89275 0.88962 0.86807 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.91 71.98 0.71 -3.42 16 2 C -0.10 -3.75 5.92 30.60 0.18 -3.57 16 3 C -0.05 -1.97 5.04 29.85 0.15 -1.82 16 4 C -0.06 -2.45 5.47 -19.48 -0.11 -2.56 16 5 C -0.05 -2.22 6.60 39.97 0.26 -1.96 16 6 C 0.50 26.23 7.58 86.46 0.66 26.88 16 7 O -0.61 -35.27 14.34 -4.39 -0.06 -35.33 16 8 N -0.46 -23.87 3.01 -663.42 -2.00 -25.86 16 9 C 0.10 4.40 7.12 127.77 0.91 5.31 16 10 C -0.34 -19.48 9.29 84.09 0.78 -18.70 16 11 H 0.08 4.57 7.38 -2.91 -0.02 4.55 16 12 C 0.00 0.14 4.98 84.95 0.42 0.56 16 13 N -0.89 -45.32 10.87 21.68 0.24 -45.09 16 14 Si 0.99 41.57 29.58 68.60 2.03 43.60 16 15 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 18 N -0.53 -17.40 4.99 -171.46 -0.85 -18.26 16 19 H 0.43 12.87 4.78 -92.71 -0.44 12.43 16 20 C 0.09 2.42 7.22 42.30 0.31 2.73 16 21 C -0.09 -1.49 10.20 71.24 0.73 -0.76 16 22 C -0.28 -8.78 5.71 -20.18 -0.12 -8.89 16 23 C 0.45 12.05 6.52 27.87 0.18 12.23 16 24 C -0.19 -3.20 10.32 71.23 0.73 -2.46 16 25 O -0.49 -16.31 17.86 -3.18 -0.06 -16.37 16 26 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 2.89 6.29 -2.39 -0.02 2.88 16 32 H 0.08 2.45 8.05 -2.39 -0.02 2.43 16 33 H 0.06 2.38 7.36 -2.39 -0.02 2.36 16 34 H 0.07 3.31 6.70 -2.39 -0.02 3.29 16 35 H 0.06 2.13 5.34 -2.39 -0.01 2.11 16 36 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.41 7.99 -2.39 -0.02 1.39 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.10 1.56 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -72.25 347.39 5.69 -66.55 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.59 Total: 27.19 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.80 Total: 3.57 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.62 Total: -89.21 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.12 Total: -51.70 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.25 5.69 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263815253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.060 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds